| 26 |
0.00484 |
0.5385 |
b3033 |
yqiB |
-11.20 |
0.065436 |
106 -- 117 |
15 -- 27 |
DUF1249 protein YqiB |
|
_____________105___________118\n_____________|_____________|\n5'-UGG...CCAGU_____________GGAAA...GCG-3'\n______________GGG_UAGAAGAGG\n______________|||_||:||||||\n______________CCC_AUUUUCUCC\n3'-CGC...AAGUU___A_________ACGGC...AAG-5'\n_____________|_____________|\n_____________28____________14\n |
111 -- 117 |
15 -- 21 |
-17.3581 kcal/mol |
2.92425 kcal/mol |
3.23583 kcal/mol |
105 118@LB@ | |@LB@5'-UGG...CCAGU GGAAA...GCG-3'@LB@ GGG UAGAAGAGG@LB@ ||| ||:||||||@LB@ CCC AUUUUCUCC@LB@3'-CGC...AAGUU A ACGGC...AAG-5'@LB@ | |@LB@ 28 14@LB@@LB@@LB@Energy -11.20 kcal/mol@LB@Hybridization Energy -17.3581 kcal/mol@LB@Unfolding Energy - mRNA 2.92425 kcal/mol@LB@Unfolding Energy - sRNA 3.23583 kcal/mol@LB@@LB@Position - mRNA 106 -- 117@LB@Position - sRNA 15 -- 27@LB@Position Seed - mRNA 111 -- 117@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 6 |
0.001078 |
0.5385 |
b0849 |
grxA |
-11.19 |
0.065759 |
209 -- 232 |
58 -- 81 |
glutaredoxin 1 redox coenzyme for ribonucleotide reductase (RNR1a) |
|
_____________208______________________233\n_____________|________________________|\n5'-AGU...CAAAC____AU_______C__________CCCUU...AUC-3'\n______________CGUU__UUUUGGU_GUUCGGGUUG\n______________||||__:|||:||_:||||:||||\n______________GCAA__GAAAUCA_UAAGCUCAAC\n3'-CGC...CAAGU____CC_______A__________UCUUU...AAG-5'\n_____________|________________________|\n_____________82_______________________57\n |
226 -- 232 |
58 -- 64 |
-21.2762 kcal/mol |
8.79419 kcal/mol |
1.29619 kcal/mol |
208 233@LB@ | |@LB@5'-AGU...CAAAC AU C CCCUU...AUC-3'@LB@ CGUU UUUUGGU GUUCGGGUUG@LB@ |||| :|||:|| :||||:||||@LB@ GCAA GAAAUCA UAAGCUCAAC@LB@3'-CGC...CAAGU CC A UCUUU...AAG-5'@LB@ | |@LB@ 82 57@LB@@LB@@LB@Energy -11.19 kcal/mol@LB@Hybridization Energy -21.2762 kcal/mol@LB@Unfolding Energy - mRNA 8.79419 kcal/mol@LB@Unfolding Energy - sRNA 1.29619 kcal/mol@LB@@LB@Position - mRNA 209 -- 232@LB@Position - sRNA 58 -- 81@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 58 -- 64@LB@ |
| 174 |
0.03067 |
0.5559 |
b4005 |
purD |
-11.17 |
0.066076 |
4 -- 22 |
73 -- 90 |
phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligase |
|
_____________3___________________23\n_____________|___________________|\n________5'-GUG________CU__A______CUGAC...GUA-3'\n______________AAAGGUUC__CG_UGGCUU\n______________|||:||||__||_||||||\n______________UUUUCAAG__GC_ACCGAA\n3'-CGC...AGGCG________U___A______AUCAA...AAG-5'\n_____________|___________________|\n_____________91__________________72\n |
5 -- 11 |
83 -- 89 |
-16.9563 kcal/mol |
5.26463 kcal/mol |
0.517799 kcal/mol |
3 23@LB@ | |@LB@ 5'-GUG CU A CUGAC...GUA-3'@LB@ AAAGGUUC CG UGGCUU@LB@ |||:|||| || ||||||@LB@ UUUUCAAG GC ACCGAA@LB@3'-CGC...AGGCG U A AUCAA...AAG-5'@LB@ | |@LB@ 91 72@LB@@LB@@LB@Energy -11.17 kcal/mol@LB@Hybridization Energy -16.9563 kcal/mol@LB@Unfolding Energy - mRNA 5.26463 kcal/mol@LB@Unfolding Energy - sRNA 0.517799 kcal/mol@LB@@LB@Position - mRNA 4 -- 22@LB@Position - sRNA 73 -- 90@LB@Position Seed - mRNA 5 -- 11@LB@Position Seed - sRNA 83 -- 89@LB@ |
| 37 |
0.006912 |
0.5385 |
b3693 |
dgoK |
-11.15 |
0.066742 |
227 -- 259 |
71 -- 102 |
2-oxo-3-deoxygalactonate kinase |
|
_____________226________________________________260\n_____________|__________________________________|\n5'-CAG...AUUGA_________GAC___UCUG_____CC________UCAGG...CAG-3'\n______________CUGGGGAUC___CAA_____CGCG__UGGCUUUA\n______________||||:||||___|||_____|:||__||||||||\n______________GACCUCUAG___GUU_____GUGC__ACCGAAAU\n____3'-CGCCUAG_________GC____UUCAA____A_________CAAUA...AAG-5'\n_____________|__________________________________|\n_____________103________________________________70\n |
253 -- 259 |
71 -- 77 |
-30.6737 kcal/mol |
7.60256 kcal/mol |
11.9219 kcal/mol |
226 260@LB@ | |@LB@5'-CAG...AUUGA GAC UCUG CC UCAGG...CAG-3'@LB@ CUGGGGAUC CAA CGCG UGGCUUUA@LB@ ||||:|||| ||| |:|| ||||||||@LB@ GACCUCUAG GUU GUGC ACCGAAAU@LB@ 3'-CGCCUAG GC UUCAA A CAAUA...AAG-5'@LB@ | |@LB@ 103 70@LB@@LB@@LB@Energy -11.15 kcal/mol@LB@Hybridization Energy -30.6737 kcal/mol@LB@Unfolding Energy - mRNA 7.60256 kcal/mol@LB@Unfolding Energy - sRNA 11.9219 kcal/mol@LB@@LB@Position - mRNA 227 -- 259@LB@Position - sRNA 71 -- 102@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 119 |
0.02023 |
0.5385 |
b3579 |
yiaO |
-11.14 |
0.066893 |
104 -- 124 |
64 -- 84 |
2 3-diketo-L-gulonate-binding periplasmic protein |
|
_____________103_____________________125\n_____________|_______________________|\n5'-ACU...UUCCC______CC_______________AUUAU...AAA-3'\n______________UUACGU__UGGUUUUA__UAUUC\n______________|:||||__|||:||||__|||||\n______________AGUGCA__ACCGAAAU__AUAAG\n3'-CGC...UUUCA________________CA_____CUCAA...AAG-5'\n_____________|_______________________|\n_____________85______________________63\n |
113 -- 119 |
71 -- 77 |
-15.3214 kcal/mol |
3.60448 kcal/mol |
0.573392 kcal/mol |
103 125@LB@ | |@LB@5'-ACU...UUCCC CC AUUAU...AAA-3'@LB@ UUACGU UGGUUUUA UAUUC@LB@ |:|||| |||:|||| |||||@LB@ AGUGCA ACCGAAAU AUAAG@LB@3'-CGC...UUUCA CA CUCAA...AAG-5'@LB@ | |@LB@ 85 63@LB@@LB@@LB@Energy -11.14 kcal/mol@LB@Hybridization Energy -15.3214 kcal/mol@LB@Unfolding Energy - mRNA 3.60448 kcal/mol@LB@Unfolding Energy - sRNA 0.573392 kcal/mol@LB@@LB@Position - mRNA 104 -- 124@LB@Position - sRNA 64 -- 84@LB@Position Seed - mRNA 113 -- 119@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 24 |
0.00428 |
0.5385 |
b0090 |
murG |
-10.85 |
0.075280 |
191 -- 203 |
77 -- 89 |
N-acetylglucosaminyl transferase |
|
_____________190___________204\n_____________|_____________|\n5'-AUU...UGUAC__________A__AGUGG...GUU-3'\n______________GAGGUUCACG_UG\n______________:|:|||||||_||\n______________UUUCAAGUGC_AC\n3'-CGC...GGCGU__________A__CGAAA...AAG-5'\n_____________|_____________|\n_____________90____________76\n |
194 -- 200 |
80 -- 86 |
-14.5499 kcal/mol |
3.18923 kcal/mol |
0.510111 kcal/mol |
190 204@LB@ | |@LB@5'-AUU...UGUAC A AGUGG...GUU-3'@LB@ GAGGUUCACG UG@LB@ :|:||||||| ||@LB@ UUUCAAGUGC AC@LB@3'-CGC...GGCGU A CGAAA...AAG-5'@LB@ | |@LB@ 90 76@LB@@LB@@LB@Energy -10.85 kcal/mol@LB@Hybridization Energy -14.5499 kcal/mol@LB@Unfolding Energy - mRNA 3.18923 kcal/mol@LB@Unfolding Energy - sRNA 0.510111 kcal/mol@LB@@LB@Position - mRNA 191 -- 203@LB@Position - sRNA 77 -- 89@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 80 -- 86@LB@ |
| 171 |
0.03054 |
0.5559 |
b0045 |
yaaU |
-10.82 |
0.076059 |
142 -- 153 |
73 -- 84 |
putative MFS sugar transporter; membrane protein |
|
_____________141__________154\n_____________|____________|\n5'-AAG...ACGGC_G__________GAUAC...UAC-3'\n______________U_AUGUUGGUUU\n______________|_|:|||||:||\n______________A_UGCAACCGAA\n3'-CGC...UUUCA_G__________AUCAA...AAG-5'\n_____________|____________|\n_____________85___________72\n |
147 -- 153 |
73 -- 79 |
-12.9415 kcal/mol |
1.60777 kcal/mol |
0.508835 kcal/mol |
141 154@LB@ | |@LB@5'-AAG...ACGGC G GAUAC...UAC-3'@LB@ U AUGUUGGUUU@LB@ | |:|||||:||@LB@ A UGCAACCGAA@LB@3'-CGC...UUUCA G AUCAA...AAG-5'@LB@ | |@LB@ 85 72@LB@@LB@@LB@Energy -10.82 kcal/mol@LB@Hybridization Energy -12.9415 kcal/mol@LB@Unfolding Energy - mRNA 1.60777 kcal/mol@LB@Unfolding Energy - sRNA 0.508835 kcal/mol@LB@@LB@Position - mRNA 142 -- 153@LB@Position - sRNA 73 -- 84@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 73 -- 79@LB@ |
| 64 |
0.01278 |
0.5385 |
b1718 |
infC |
-10.82 |
0.076139 |
1 -- 9 |
71 -- 79 |
translation initiation factor IF-3 |
|
______________1________10\n______________|________|\n___________5'-_________AAAUC...AGC-3'\n______________UUGGCUUUA\n______________|||||||||\n______________AACCGAAAU\n3'-CGC...AGUGC_________CAAUA...AAG-5'\n_____________|_________|\n_____________80________70\n |
3 -- 9 |
71 -- 77 |
-11.2516 kcal/mol |
0.206511 kcal/mol |
0.222833 kcal/mol |
1 10@LB@ | |@LB@ 5'- AAAUC...AGC-3'@LB@ UUGGCUUUA@LB@ |||||||||@LB@ AACCGAAAU@LB@3'-CGC...AGUGC CAAUA...AAG-5'@LB@ | |@LB@ 80 70@LB@@LB@@LB@Energy -10.82 kcal/mol@LB@Hybridization Energy -11.2516 kcal/mol@LB@Unfolding Energy - mRNA 0.206511 kcal/mol@LB@Unfolding Energy - sRNA 0.222833 kcal/mol@LB@@LB@Position - mRNA 1 -- 9@LB@Position - sRNA 71 -- 79@LB@Position Seed - mRNA 3 -- 9@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 131 |
0.02244 |
0.5385 |
b1713 |
pheT |
-10.81 |
0.076409 |
64 -- 80 |
73 -- 89 |
phenylalanine tRNA synthetase beta subunit |
|
_____________63________________81\n_____________|_________________|\n5'-CUG...ACCCG_________UC______CGCCU...ACG-3'\n______________GAAGUUUAC__UGGUUU\n______________:|||||:||__|||:||\n______________UUUCAAGUG__ACCGAA\n3'-CGC...GGCGU_________CA______AUCAA...AAG-5'\n_____________|_________________|\n_____________90________________72\n |
66 -- 72 |
81 -- 87 |
-14.6363 kcal/mol |
3.30516 kcal/mol |
0.517627 kcal/mol |
63 81@LB@ | |@LB@5'-CUG...ACCCG UC CGCCU...ACG-3'@LB@ GAAGUUUAC UGGUUU@LB@ :|||||:|| |||:||@LB@ UUUCAAGUG ACCGAA@LB@3'-CGC...GGCGU CA AUCAA...AAG-5'@LB@ | |@LB@ 90 72@LB@@LB@@LB@Energy -10.81 kcal/mol@LB@Hybridization Energy -14.6363 kcal/mol@LB@Unfolding Energy - mRNA 3.30516 kcal/mol@LB@Unfolding Energy - sRNA 0.517627 kcal/mol@LB@@LB@Position - mRNA 64 -- 80@LB@Position - sRNA 73 -- 89@LB@Position Seed - mRNA 66 -- 72@LB@Position Seed - sRNA 81 -- 87@LB@ |
| 87 |
0.01529 |
0.5385 |
b3636 |
rpmG |
-10.80 |
0.076825 |
199 -- 224 |
53 -- 84 |
50S ribosomal subunit protein L33 |
|
_____________198______________________________225\n_____________|________________________________|\n5'-CAC...AUAAA___________AA__G________________AUCAA...AAC-3'\n______________UCA___UGGCU__AG_UAUUCG___UGAGAAA\n______________|||___|||||__||_||||||___|||||||\n______________AGU___ACCGA__UC_AUAAGC___ACUCUUU\n3'-CGC...UUUCA___GCA_____AA__A______UCA_______GAGAG...AAG-5'\n_____________|________________________________|\n_____________85_______________________________52\n |
218 -- 224 |
53 -- 59 |
-20.7518 kcal/mol |
5.65772 kcal/mol |
4.29409 kcal/mol |
198 225@LB@ | |@LB@5'-CAC...AUAAA AA G AUCAA...AAC-3'@LB@ UCA UGGCU AG UAUUCG UGAGAAA@LB@ ||| ||||| || |||||| |||||||@LB@ AGU ACCGA UC AUAAGC ACUCUUU@LB@3'-CGC...UUUCA GCA AA A UCA GAGAG...AAG-5'@LB@ | |@LB@ 85 52@LB@@LB@@LB@Energy -10.80 kcal/mol@LB@Hybridization Energy -20.7518 kcal/mol@LB@Unfolding Energy - mRNA 5.65772 kcal/mol@LB@Unfolding Energy - sRNA 4.29409 kcal/mol@LB@@LB@Position - mRNA 199 -- 224@LB@Position - sRNA 53 -- 84@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 53 -- 59@LB@ |
