111 |
0.01894 |
0.5385 |
b2600 |
tyrA |
-7.88 |
0.238290 |
191 -- 206 |
74 -- 89 |
fused chorismate mutase T/prephenate dehydrogenase |
|
_____________190______________207\n_____________|________________|\n5'-UCG...CUUAA_________UA_____GCUGA...UGG-3'\n______________GAGGUUUAU__UGGUU\n______________:|:|||:|:__|||:|\n______________UUUCAAGUG__ACCGA\n3'-CGC...GGCGU_________CA_____AAUCA...AAG-5'\n_____________|________________|\n_____________90_______________73\n |
193 -- 199 |
81 -- 87 |
-12.4695 kcal/mol |
4.06959 kcal/mol |
0.517373 kcal/mol |
190 207@LB@ | |@LB@5'-UCG...CUUAA UA GCUGA...UGG-3'@LB@ GAGGUUUAU UGGUU@LB@ :|:|||:|: |||:|@LB@ UUUCAAGUG ACCGA@LB@3'-CGC...GGCGU CA AAUCA...AAG-5'@LB@ | |@LB@ 90 73@LB@@LB@@LB@Energy -7.88 kcal/mol@LB@Hybridization Energy -12.4695 kcal/mol@LB@Unfolding Energy - mRNA 4.06959 kcal/mol@LB@Unfolding Energy - sRNA 0.517373 kcal/mol@LB@@LB@Position - mRNA 191 -- 206@LB@Position - sRNA 74 -- 89@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 81 -- 87@LB@ |
58 |
0.01138 |
0.5385 |
b2595 |
bamD |
-7.85 |
0.240744 |
21 -- 29 |
72 -- 80 |
BamABCDE complex OM biogenesis lipoprotein |
|
_____________20________30\n_____________|_________|\n5'-CUG...ACCGA_________CGGAC...AUG-3'\n______________GUUGGUUUU\n______________|||||:|||\n______________CAACCGAAA\n3'-CGC...AAGUG_________UCAAU...AAG-5'\n_____________|_________|\n_____________81________71\n |
23 -- 29 |
72 -- 78 |
-10.2023 kcal/mol |
2.1418 kcal/mol |
0.205868 kcal/mol |
20 30@LB@ | |@LB@5'-CUG...ACCGA CGGAC...AUG-3'@LB@ GUUGGUUUU@LB@ |||||:|||@LB@ CAACCGAAA@LB@3'-CGC...AAGUG UCAAU...AAG-5'@LB@ | |@LB@ 81 71@LB@@LB@@LB@Energy -7.85 kcal/mol@LB@Hybridization Energy -10.2023 kcal/mol@LB@Unfolding Energy - mRNA 2.1418 kcal/mol@LB@Unfolding Energy - sRNA 0.205868 kcal/mol@LB@@LB@Position - mRNA 21 -- 29@LB@Position - sRNA 72 -- 80@LB@Position Seed - mRNA 23 -- 29@LB@Position Seed - sRNA 72 -- 78@LB@ |
176 |
0.03112 |
0.5559 |
b2536 |
hcaT |
-7.63 |
0.261550 |
240 -- 259 |
67 -- 85 |
putative 3-phenylpropionic transporter |
|
_____________239__________________260\n_____________|____________________|\n5'-UCG...GCUAU_____AUACUU_________CGGCA...GGA-3'\n______________UUCAC______UUUUAGUUA\n______________|||||______:||||||||\n______________AAGUG______GAAAUCAAU\n3'-CGC...UUUUC_____CAACC__________AAGCU...AAG-5'\n_____________|____________________|\n_____________86___________________66\n |
253 -- 259 |
67 -- 73 |
-10.0019 kcal/mol |
1.80629 kcal/mol |
0.569003 kcal/mol |
239 260@LB@ | |@LB@5'-UCG...GCUAU AUACUU CGGCA...GGA-3'@LB@ UUCAC UUUUAGUUA@LB@ ||||| :||||||||@LB@ AAGUG GAAAUCAAU@LB@3'-CGC...UUUUC CAACC AAGCU...AAG-5'@LB@ | |@LB@ 86 66@LB@@LB@@LB@Energy -7.63 kcal/mol@LB@Hybridization Energy -10.0019 kcal/mol@LB@Unfolding Energy - mRNA 1.80629 kcal/mol@LB@Unfolding Energy - sRNA 0.569003 kcal/mol@LB@@LB@Position - mRNA 240 -- 259@LB@Position - sRNA 67 -- 85@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 67 -- 73@LB@ |
164 |
0.02889 |
0.5559 |
b1512 |
lsrR |
-7.59 |
0.264791 |
265 -- 277 |
71 -- 84 |
lsr operon transcriptional repressor |
|
_____________264____________278\n_____________|______________|\n5'-GCU...GCGGA______________CUAUC...AGA-3'\n______________UCGCG_UGGUUUUA\n______________||:||_|||:||||\n______________AGUGC_ACCGAAAU\n3'-CGC...UUUCA_____A________CAAUA...AAG-5'\n_____________|______________|\n_____________85_____________70\n |
271 -- 277 |
71 -- 77 |
-14.8882 kcal/mol |
6.73904 kcal/mol |
0.5567 kcal/mol |
264 278@LB@ | |@LB@5'-GCU...GCGGA CUAUC...AGA-3'@LB@ UCGCG UGGUUUUA@LB@ ||:|| |||:||||@LB@ AGUGC ACCGAAAU@LB@3'-CGC...UUUCA A CAAUA...AAG-5'@LB@ | |@LB@ 85 70@LB@@LB@@LB@Energy -7.59 kcal/mol@LB@Hybridization Energy -14.8882 kcal/mol@LB@Unfolding Energy - mRNA 6.73904 kcal/mol@LB@Unfolding Energy - sRNA 0.5567 kcal/mol@LB@@LB@Position - mRNA 265 -- 277@LB@Position - sRNA 71 -- 84@LB@Position Seed - mRNA 271 -- 277@LB@Position Seed - sRNA 71 -- 77@LB@ |
127 |
0.02181 |
0.5385 |
b3057 |
bacA |
-7.57 |
0.267037 |
62 -- 69 |
75 -- 82 |
undecaprenyl pyrophosphate phosphatase |
|
_____________61_______70\n_____________|________|\n5'-UUC...GGCGA________GUAAU...UUG-3'\n______________AUGUUGGC\n______________|:||||||\n______________UGCAACCG\n3'-CGC...UCAAG________AAAUC...AAG-5'\n_____________|________|\n_____________83_______74\n |
63 -- 69 |
75 -- 81 |
-12.0605 kcal/mol |
4.15225 kcal/mol |
0.339284 kcal/mol |
61 70@LB@ | |@LB@5'-UUC...GGCGA GUAAU...UUG-3'@LB@ AUGUUGGC@LB@ |:||||||@LB@ UGCAACCG@LB@3'-CGC...UCAAG AAAUC...AAG-5'@LB@ | |@LB@ 83 74@LB@@LB@@LB@Energy -7.57 kcal/mol@LB@Hybridization Energy -12.0605 kcal/mol@LB@Unfolding Energy - mRNA 4.15225 kcal/mol@LB@Unfolding Energy - sRNA 0.339284 kcal/mol@LB@@LB@Position - mRNA 62 -- 69@LB@Position - sRNA 75 -- 82@LB@Position Seed - mRNA 63 -- 69@LB@Position Seed - sRNA 75 -- 81@LB@ |
186 |
0.03285 |
0.5559 |
b1003 |
yccJ |
-7.53 |
0.270746 |
41 -- 54 |
75 -- 88 |
uncharacterized protein |
|
_____________40_____________55\n_____________|______________|\n5'-CCU...UUCAC_________GC___ACGCC...GGU-3'\n______________AGGUUCGCG__GGU\n______________|:||||:||__||:\n______________UUCAAGUGC__CCG\n3'-CGC...GCGUU_________AA___AAAUC...AAG-5'\n_____________|______________|\n_____________89_____________74\n |
43 -- 49 |
80 -- 86 |
-16.6206 kcal/mol |
8.57413 kcal/mol |
0.515884 kcal/mol |
40 55@LB@ | |@LB@5'-CCU...UUCAC GC ACGCC...GGU-3'@LB@ AGGUUCGCG GGU@LB@ |:||||:|| ||:@LB@ UUCAAGUGC CCG@LB@3'-CGC...GCGUU AA AAAUC...AAG-5'@LB@ | |@LB@ 89 74@LB@@LB@@LB@Energy -7.53 kcal/mol@LB@Hybridization Energy -16.6206 kcal/mol@LB@Unfolding Energy - mRNA 8.57413 kcal/mol@LB@Unfolding Energy - sRNA 0.515884 kcal/mol@LB@@LB@Position - mRNA 41 -- 54@LB@Position - sRNA 75 -- 88@LB@Position Seed - mRNA 43 -- 49@LB@Position Seed - sRNA 80 -- 86@LB@ |
196 |
0.0344 |
0.5559 |
b0954 |
fabA |
-7.50 |
0.274211 |
100 -- 110 |
74 -- 84 |
beta-hydroxydecanoyl thioester dehydrase |
|
_____________99__________111\n_____________|___________|\n5'-GUG...GGCCA___________GAACU...ACA-3'\n______________UUACGUUGGCU\n______________|:|||||||||\n______________AGUGCAACCGA\n3'-CGC...UUUCA___________AAUCA...AAG-5'\n_____________|___________|\n_____________85__________73\n |
104 -- 110 |
74 -- 80 |
-16.8122 kcal/mol |
8.80896 kcal/mol |
0.508159 kcal/mol |
99 111@LB@ | |@LB@5'-GUG...GGCCA GAACU...ACA-3'@LB@ UUACGUUGGCU@LB@ |:|||||||||@LB@ AGUGCAACCGA@LB@3'-CGC...UUUCA AAUCA...AAG-5'@LB@ | |@LB@ 85 73@LB@@LB@@LB@Energy -7.50 kcal/mol@LB@Hybridization Energy -16.8122 kcal/mol@LB@Unfolding Energy - mRNA 8.80896 kcal/mol@LB@Unfolding Energy - sRNA 0.508159 kcal/mol@LB@@LB@Position - mRNA 100 -- 110@LB@Position - sRNA 74 -- 84@LB@Position Seed - mRNA 104 -- 110@LB@Position Seed - sRNA 74 -- 80@LB@ |
140 |
0.02329 |
0.5385 |
b3026 |
qseC |
-7.47 |
0.277092 |
174 -- 202 |
52 -- 78 |
quorum sensing sensory histidine kinase in two-component regulatory system with QseB |
|
_____________173___________________________203\n_____________|_____________________________|\n5'-AAA...GUGCA____A_______CA_AUU__G________GAAAU...GGA-3'\n______________UGGU_UUGGUUA__C___AG_UGAGAAAU\n______________|||:_||:||||__|___||_|||||||:\n______________ACCG_AAUCAAU__G___UC_ACUCUUUG\n3'-CGC...GUGCA____A_______AA_C____A________AGAGC...AAG-5'\n_____________|_____________________________|\n_____________79____________________________51\n |
196 -- 202 |
52 -- 58 |
-18.6962 kcal/mol |
6.8409 kcal/mol |
4.38944 kcal/mol |
173 203@LB@ | |@LB@5'-AAA...GUGCA A CA AUU G GAAAU...GGA-3'@LB@ UGGU UUGGUUA C AG UGAGAAAU@LB@ |||: ||:|||| | || |||||||:@LB@ ACCG AAUCAAU G UC ACUCUUUG@LB@3'-CGC...GUGCA A AA C A AGAGC...AAG-5'@LB@ | |@LB@ 79 51@LB@@LB@@LB@Energy -7.47 kcal/mol@LB@Hybridization Energy -18.6962 kcal/mol@LB@Unfolding Energy - mRNA 6.8409 kcal/mol@LB@Unfolding Energy - sRNA 4.38944 kcal/mol@LB@@LB@Position - mRNA 174 -- 202@LB@Position - sRNA 52 -- 78@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 52 -- 58@LB@ |
191 |
0.03353 |
0.5559 |
b2129 |
yehX |
-7.36 |
0.287226 |
59 -- 67 |
69 -- 77 |
putative ABC transporter ATPase |
|
_____________58________68\n_____________|_________|\n5'-GGU...CAGGC_________GCGCU...UUG-3'\n______________GGUUUUGGU\n______________||:|||:||\n______________CCGAAAUCA\n3'-CGC...UGCAA_________AUAAG...AAG-5'\n_____________|_________|\n_____________78________68\n |
61 -- 67 |
69 -- 75 |
-10.3561 kcal/mol |
2.74802 kcal/mol |
0.243235 kcal/mol |
58 68@LB@ | |@LB@5'-GGU...CAGGC GCGCU...UUG-3'@LB@ GGUUUUGGU@LB@ ||:|||:||@LB@ CCGAAAUCA@LB@3'-CGC...UGCAA AUAAG...AAG-5'@LB@ | |@LB@ 78 68@LB@@LB@@LB@Energy -7.36 kcal/mol@LB@Hybridization Energy -10.3561 kcal/mol@LB@Unfolding Energy - mRNA 2.74802 kcal/mol@LB@Unfolding Energy - sRNA 0.243235 kcal/mol@LB@@LB@Position - mRNA 59 -- 67@LB@Position - sRNA 69 -- 77@LB@Position Seed - mRNA 61 -- 67@LB@Position Seed - sRNA 69 -- 75@LB@ |
141 |
0.02331 |
0.5385 |
b1844 |
exoX |
-7.22 |
0.302733 |
200 -- 217 |
62 -- 83 |
exodeoxyribonuclease 10; DNA exonuclease X |
|
_____________199_____________________218\n_____________|_______________________|\n5'-UUA...CAUGC_______C__A____________UACAG...UGA-3'\n______________CAUGUUG_GC_UUA_____UCGA\n______________||:||||_||_|||_____||||\n______________GUGCAAC_CG_AAU_____AGCU\n3'-CGC...UUCAA__________A___CAAUA____CAACU...AAG-5'\n_____________|_______________________|\n_____________84______________________61\n |
200 -- 206 |
77 -- 83 |
-13.618 kcal/mol |
4.77882 kcal/mol |
1.62352 kcal/mol |
199 218@LB@ | |@LB@5'-UUA...CAUGC C A UACAG...UGA-3'@LB@ CAUGUUG GC UUA UCGA@LB@ ||:|||| || ||| ||||@LB@ GUGCAAC CG AAU AGCU@LB@3'-CGC...UUCAA A CAAUA CAACU...AAG-5'@LB@ | |@LB@ 84 61@LB@@LB@@LB@Energy -7.22 kcal/mol@LB@Hybridization Energy -13.618 kcal/mol@LB@Unfolding Energy - mRNA 4.77882 kcal/mol@LB@Unfolding Energy - sRNA 1.62352 kcal/mol@LB@@LB@Position - mRNA 200 -- 217@LB@Position - sRNA 62 -- 83@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 77 -- 83@LB@ |