| 65 |
0.01282 |
0.5385 |
b0589 |
fepG |
-12.08 |
0.045738 |
8 -- 17 |
74 -- 83 |
iron-enterobactin ABC transporter permease |
|
_____________7__________18\n_____________|__________|\n____5'-CAUAUGG__________GGUGG...CGC-3'\n______________CGCGUUGGCU\n______________|:||||||||\n______________GUGCAACCGA\n3'-CGC...UUCAA__________AAUCA...AAG-5'\n_____________|__________|\n_____________84_________73\n |
11 -- 17 |
74 -- 80 |
-17.1529 kcal/mol |
4.57841 kcal/mol |
0.494551 kcal/mol |
7 18@LB@ | |@LB@ 5'-CAUAUGG GGUGG...CGC-3'@LB@ CGCGUUGGCU@LB@ |:||||||||@LB@ GUGCAACCGA@LB@3'-CGC...UUCAA AAUCA...AAG-5'@LB@ | |@LB@ 84 73@LB@@LB@@LB@Energy -12.08 kcal/mol@LB@Hybridization Energy -17.1529 kcal/mol@LB@Unfolding Energy - mRNA 4.57841 kcal/mol@LB@Unfolding Energy - sRNA 0.494551 kcal/mol@LB@@LB@Position - mRNA 8 -- 17@LB@Position - sRNA 74 -- 83@LB@Position Seed - mRNA 11 -- 17@LB@Position Seed - sRNA 74 -- 80@LB@ |
| 120 |
0.02045 |
0.5385 |
b0979 |
cbdB |
-12.05 |
0.046235 |
177 -- 194 |
16 -- 34 |
cytochrome bd-II oxidase subunit II |
|
_____________176_________________195\n_____________|___________________|\n5'-AUA...ACGCA__AA_______________AAAAU...GCU-3'\n______________GC__CAGGGG_UAAAGGAG\n______________:|__||:|||_||||:|||\n______________UG__GUUCCC_AUUUUCUC\n3'-CGC...GUCAC__AA______A________CACGG...AAG-5'\n_____________|___________________|\n_____________35__________________15\n |
188 -- 194 |
16 -- 22 |
-18.7902 kcal/mol |
3.40633 kcal/mol |
3.33043 kcal/mol |
176 195@LB@ | |@LB@5'-AUA...ACGCA AA AAAAU...GCU-3'@LB@ GC CAGGGG UAAAGGAG@LB@ :| ||:||| ||||:|||@LB@ UG GUUCCC AUUUUCUC@LB@3'-CGC...GUCAC AA A CACGG...AAG-5'@LB@ | |@LB@ 35 15@LB@@LB@@LB@Energy -12.05 kcal/mol@LB@Hybridization Energy -18.7902 kcal/mol@LB@Unfolding Energy - mRNA 3.40633 kcal/mol@LB@Unfolding Energy - sRNA 3.33043 kcal/mol@LB@@LB@Position - mRNA 177 -- 194@LB@Position - sRNA 16 -- 34@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 16 -- 22@LB@ |
| 185 |
0.03283 |
0.5559 |
b1937 |
fliE |
-12.05 |
0.046361 |
209 -- 229 |
14 -- 35 |
flagellar basal-body component |
|
_____________208____________________230\n_____________|______________________|\n5'-CUG...UCAGC___A_______AUU________UAUCA...GUU-3'\n______________GAU__CAGGGG___GAAGGGGU\n______________||:__||:|||___:|||:|||\n______________CUG__GUUCCC___UUUCUCCA\n3'-CGC...CGUCA___AA______AAU________CGGCG...AAG-5'\n_____________|______________________|\n_____________36_____________________13\n |
223 -- 229 |
14 -- 20 |
-20.5154 kcal/mol |
5.13678 kcal/mol |
3.33183 kcal/mol |
208 230@LB@ | |@LB@5'-CUG...UCAGC A AUU UAUCA...GUU-3'@LB@ GAU CAGGGG GAAGGGGU@LB@ ||: ||:||| :|||:|||@LB@ CUG GUUCCC UUUCUCCA@LB@3'-CGC...CGUCA AA AAU CGGCG...AAG-5'@LB@ | |@LB@ 36 13@LB@@LB@@LB@Energy -12.05 kcal/mol@LB@Hybridization Energy -20.5154 kcal/mol@LB@Unfolding Energy - mRNA 5.13678 kcal/mol@LB@Unfolding Energy - sRNA 3.33183 kcal/mol@LB@@LB@Position - mRNA 209 -- 229@LB@Position - sRNA 14 -- 35@LB@Position Seed - mRNA 223 -- 229@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 179 |
0.03159 |
0.5559 |
b0790 |
ybhP |
-12.03 |
0.046743 |
250 -- 264 |
71 -- 85 |
endo/exonuclease/phosphatase family protein |
|
_____________249_____________265\n_____________|_______________|\n5'-AGU...CAAUA_____AAA_______CCGCG...UUC-3'\n______________UUCAC___GGCUUUA\n______________|||||___|||||||\n______________AAGUG___CCGAAAU\n3'-CGC...UUUUC_____CAA_______CAAUA...AAG-5'\n_____________|_______________|\n_____________86______________70\n |
258 -- 264 |
71 -- 77 |
-13.6298 kcal/mol |
1.04243 kcal/mol |
0.560731 kcal/mol |
249 265@LB@ | |@LB@5'-AGU...CAAUA AAA CCGCG...UUC-3'@LB@ UUCAC GGCUUUA@LB@ ||||| |||||||@LB@ AAGUG CCGAAAU@LB@3'-CGC...UUUUC CAA CAAUA...AAG-5'@LB@ | |@LB@ 86 70@LB@@LB@@LB@Energy -12.03 kcal/mol@LB@Hybridization Energy -13.6298 kcal/mol@LB@Unfolding Energy - mRNA 1.04243 kcal/mol@LB@Unfolding Energy - sRNA 0.560731 kcal/mol@LB@@LB@Position - mRNA 250 -- 264@LB@Position - sRNA 71 -- 85@LB@Position Seed - mRNA 258 -- 264@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 74 |
0.01362 |
0.5385 |
b0946 |
zapC |
-12.02 |
0.046851 |
175 -- 197 |
15 -- 35 |
FtsZ stabilizer |
|
_____________174_____________________198\n_____________|_______________________|\n5'-AUU...GCUGC_______U_____AG________CAGAU...GUU-3'\n______________GGUUUUA_AGGGU__GGGAGAGG\n______________|::||:|_|||||__:::|||||\n______________CUGAAGU_UCCCA__UUUUCUCC\n3'-CGC...CGUCA_____________A_________ACGGC...AAG-5'\n_____________|_______________________|\n_____________36______________________14\n |
191 -- 197 |
15 -- 21 |
-19.3355 kcal/mol |
3.98393 kcal/mol |
3.33058 kcal/mol |
174 198@LB@ | |@LB@5'-AUU...GCUGC U AG CAGAU...GUU-3'@LB@ GGUUUUA AGGGU GGGAGAGG@LB@ |::||:| ||||| :::|||||@LB@ CUGAAGU UCCCA UUUUCUCC@LB@3'-CGC...CGUCA A ACGGC...AAG-5'@LB@ | |@LB@ 36 14@LB@@LB@@LB@Energy -12.02 kcal/mol@LB@Hybridization Energy -19.3355 kcal/mol@LB@Unfolding Energy - mRNA 3.98393 kcal/mol@LB@Unfolding Energy - sRNA 3.33058 kcal/mol@LB@@LB@Position - mRNA 175 -- 197@LB@Position - sRNA 15 -- 35@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 85 |
0.01519 |
0.5385 |
b0094 |
ftsA |
-12.00 |
0.047343 |
234 -- 271 |
69 -- 107 |
ATP-binding cell division FtsK recruitment protein |
|
_____________233__________________________________________272\n_____________|____________________________________________|\n5'-AAU...UAGUA_____________UGGUA___________GC_____________AGGGG...UCA-3'\n______________GGA__CUGGAGAU_____CCGCGAAGGUU__C____GCUUUAGU\n______________|||__||||||||_____||||:||:|||__|____||||||||\n______________CCU__GACCUCUA_____GGCGUUUUCAA__G____CGAAAUCA\n_________3'-CG___AG________________________GU_CAAC________AUAAG...AAG-5'\n_____________|____________________________________________|\n_____________108__________________________________________68\n |
265 -- 271 |
69 -- 75 |
-38.6824 kcal/mol |
14.7528 kcal/mol |
11.9342 kcal/mol |
233 272@LB@ | |@LB@5'-AAU...UAGUA UGGUA GC AGGGG...UCA-3'@LB@ GGA CUGGAGAU CCGCGAAGGUU C GCUUUAGU@LB@ ||| |||||||| ||||:||:||| | ||||||||@LB@ CCU GACCUCUA GGCGUUUUCAA G CGAAAUCA@LB@ 3'-CG AG GU CAAC AUAAG...AAG-5'@LB@ | |@LB@ 108 68@LB@@LB@@LB@Energy -12.00 kcal/mol@LB@Hybridization Energy -38.6824 kcal/mol@LB@Unfolding Energy - mRNA 14.7528 kcal/mol@LB@Unfolding Energy - sRNA 11.9342 kcal/mol@LB@@LB@Position - mRNA 234 -- 271@LB@Position - sRNA 69 -- 107@LB@Position Seed - mRNA 265 -- 271@LB@Position Seed - sRNA 69 -- 75@LB@ |
| 21 |
0.003546 |
0.5385 |
b0820 |
ybiT |
-11.98 |
0.047670 |
3 -- 23 |
55 -- 78 |
ABC-F family putative regulatory ATPase |
|
_____________2________________________24\n_____________|________________________|\n_________5'-CC_________GCCA___________AUAUU...UUG-3'\n______________UGGC___AG____UUGGGUUGAGA\n______________||||___||____|:|:|||||||\n______________ACCG___UC____AGCUCAACUCU\n3'-CGC...GUGCA____AAA__AAUA___________UUGAG...AAG-5'\n_____________|________________________|\n_____________79_______________________54\n |
17 -- 23 |
55 -- 61 |
-19.5112 kcal/mol |
4.68968 kcal/mol |
2.84302 kcal/mol |
2 24@LB@ | |@LB@ 5'-CC GCCA AUAUU...UUG-3'@LB@ UGGC AG UUGGGUUGAGA@LB@ |||| || |:|:|||||||@LB@ ACCG UC AGCUCAACUCU@LB@3'-CGC...GUGCA AAA AAUA UUGAG...AAG-5'@LB@ | |@LB@ 79 54@LB@@LB@@LB@Energy -11.98 kcal/mol@LB@Hybridization Energy -19.5112 kcal/mol@LB@Unfolding Energy - mRNA 4.68968 kcal/mol@LB@Unfolding Energy - sRNA 2.84302 kcal/mol@LB@@LB@Position - mRNA 3 -- 23@LB@Position - sRNA 55 -- 78@LB@Position Seed - mRNA 17 -- 23@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 4 |
0.0006326 |
0.5173 |
b3230 |
rpsI |
-11.95 |
0.048152 |
221 -- 251 |
74 -- 108 |
30S ribosomal subunit protein S9 |
|
_____________220_________________________________252\n_____________|___________________________________|\n5'-GUG...UACUA___CA_____UCG________________CA____CGCGU...GUU-3'\n______________CGG___CUGG____CCGCAAAAGUUC_CG___GCU\n______________|||___||||____||||||||||||_||___|||\n______________GCC___GACC____GGCGUUUUCAAG_GC___CGA\n__________3'-C___UAG____UCUA____________U__AAC___AAUCA...AAG-5'\n_____________|___________________________________|\n_____________109_________________________________73\n |
238 -- 244 |
83 -- 89 |
-33.5849 kcal/mol |
9.75151 kcal/mol |
11.8795 kcal/mol |
220 252@LB@ | |@LB@5'-GUG...UACUA CA UCG CA CGCGU...GUU-3'@LB@ CGG CUGG CCGCAAAAGUUC CG GCU@LB@ ||| |||| |||||||||||| || |||@LB@ GCC GACC GGCGUUUUCAAG GC CGA@LB@ 3'-C UAG UCUA U AAC AAUCA...AAG-5'@LB@ | |@LB@ 109 73@LB@@LB@@LB@Energy -11.95 kcal/mol@LB@Hybridization Energy -33.5849 kcal/mol@LB@Unfolding Energy - mRNA 9.75151 kcal/mol@LB@Unfolding Energy - sRNA 11.8795 kcal/mol@LB@@LB@Position - mRNA 221 -- 251@LB@Position - sRNA 74 -- 108@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 83 -- 89@LB@ |
| 173 |
0.03066 |
0.5559 |
b2928 |
yggC |
-11.87 |
0.049837 |
290 -- 298 |
75 -- 83 |
putative PanK family P-loop kinase |
|
_____________289_______299\n_____________|_________|\n5'-GAA...CUGCA_________GG-3'\n______________CAUGUUGGC\n______________||:||||||\n______________GUGCAACCG\n3'-CGC...UUCAA_________AAAUC...AAG-5'\n_____________|_________|\n_____________84________74\n |
292 -- 298 |
75 -- 81 |
-14.124 kcal/mol |
1.76242 kcal/mol |
0.492259 kcal/mol |
289 299@LB@ | |@LB@5'-GAA...CUGCA GG-3'@LB@ CAUGUUGGC@LB@ ||:||||||@LB@ GUGCAACCG@LB@3'-CGC...UUCAA AAAUC...AAG-5'@LB@ | |@LB@ 84 74@LB@@LB@@LB@Energy -11.87 kcal/mol@LB@Hybridization Energy -14.124 kcal/mol@LB@Unfolding Energy - mRNA 1.76242 kcal/mol@LB@Unfolding Energy - sRNA 0.492259 kcal/mol@LB@@LB@Position - mRNA 290 -- 298@LB@Position - sRNA 75 -- 83@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 75 -- 81@LB@ |
| 51 |
0.01052 |
0.5385 |
b0751 |
pnuC |
-11.84 |
0.050492 |
77 -- 89 |
77 -- 89 |
nicotinamide riboside transporter |
|
_____________76____________90\n_____________|_____________|\n5'-CGC...AUCAC_____________AUGAA...GGU-3'\n______________GAGGUUCAUGUUG\n______________:|:|||||:||||\n______________UUUCAAGUGCAAC\n3'-CGC...GGCGU_____________CGAAA...AAG-5'\n_____________|_____________|\n_____________90____________76\n |
83 -- 89 |
77 -- 83 |
-16.9239 kcal/mol |
4.57656 kcal/mol |
0.510111 kcal/mol |
76 90@LB@ | |@LB@5'-CGC...AUCAC AUGAA...GGU-3'@LB@ GAGGUUCAUGUUG@LB@ :|:|||||:||||@LB@ UUUCAAGUGCAAC@LB@3'-CGC...GGCGU CGAAA...AAG-5'@LB@ | |@LB@ 90 76@LB@@LB@@LB@Energy -11.84 kcal/mol@LB@Hybridization Energy -16.9239 kcal/mol@LB@Unfolding Energy - mRNA 4.57656 kcal/mol@LB@Unfolding Energy - sRNA 0.510111 kcal/mol@LB@@LB@Position - mRNA 77 -- 89@LB@Position - sRNA 77 -- 89@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 77 -- 83@LB@ |
