37 |
0.01294 |
0.2859 |
ct_591 |
sdhB |
-7.06 |
0.139804 |
161 -- 176 |
18 -- 34 |
succinate dehydrogenase iron sulfur subunit |
|
_____________160_______________177\n_____________|_________________|\n5'-AAA...AUUUA_____________UG__AAAUA...GGG-3'\n______________UAGAGGC_GUUCC__GG\n______________:|||:||_:||||__||\n______________GUCUUCG_UAAGG__CC\n3'-UUU...UCUCA_______A_____UA__GCAAU...GAA-5'\n_____________|_________________|\n_____________35________________17\n |
161 -- 167 |
28 -- 34 |
-17.8156 kcal/mol |
5.77845 kcal/mol |
4.97803 kcal/mol |
160 177@LB@ | |@LB@5'-AAA...AUUUA UG AAAUA...GGG-3'@LB@ UAGAGGC GUUCC GG@LB@ :|||:|| :|||| ||@LB@ GUCUUCG UAAGG CC@LB@3'-UUU...UCUCA A UA GCAAU...GAA-5'@LB@ | |@LB@ 35 17@LB@@LB@@LB@Energy -7.06 kcal/mol@LB@Hybridization Energy -17.8156 kcal/mol@LB@Unfolding Energy - mRNA 5.77845 kcal/mol@LB@Unfolding Energy - sRNA 4.97803 kcal/mol@LB@@LB@Position - mRNA 161 -- 176@LB@Position - sRNA 18 -- 34@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 28 -- 34@LB@ |
58 |
0.02303 |
0.29 |
ct_184 |
N/A |
-4.35 |
0.465673 |
5 -- 18 |
18 -- 35 |
Holliday junction resolvase |
|
_____________4__________________19\n_____________|__________________|\n_______5'-ACGU_______AA_________AUUAA...UGC-3'\n______________UUAGAAG______CAUGG\n______________|:|||||______|||||\n______________AGUCUUC______GUACC\n3'-UUU...AUCUC_______GAUAAG_____GCAAU...GAA-5'\n_____________|__________________|\n_____________36_________________17\n |
5 -- 11 |
29 -- 35 |
-12.193 kcal/mol |
2.86148 kcal/mol |
4.97803 kcal/mol |
4 19@LB@ | |@LB@ 5'-ACGU AA AUUAA...UGC-3'@LB@ UUAGAAG CAUGG@LB@ |:||||| |||||@LB@ AGUCUUC GUACC@LB@3'-UUU...AUCUC GAUAAG GCAAU...GAA-5'@LB@ | |@LB@ 36 17@LB@@LB@@LB@Energy -4.35 kcal/mol@LB@Hybridization Energy -12.193 kcal/mol@LB@Unfolding Energy - mRNA 2.86148 kcal/mol@LB@Unfolding Energy - sRNA 4.97803 kcal/mol@LB@@LB@Position - mRNA 5 -- 18@LB@Position - sRNA 18 -- 35@LB@Position Seed - mRNA 5 -- 11@LB@Position Seed - sRNA 29 -- 35@LB@ |
75 |
0.02725 |
0.29 |
ct_536 |
dnaQ_2 |
-6.54 |
0.180881 |
173 -- 186 |
18 -- 31 |
DNA polymerase III subunit epsilon |
|
_____________172____________187\n_____________|______________|\n5'-AGA...GAUUU_____U________AGAAC...GGU-3'\n______________GAGCU_UUUUAUGG\n______________:||||_||::||||\n______________UUCGA_AAGGUACC\n3'-UUU...CAGUC_____U________GCAAU...GAA-5'\n_____________|______________|\n_____________32_____________17\n |
180 -- 186 |
18 -- 24 |
-14.3298 kcal/mol |
2.92947 kcal/mol |
4.86077 kcal/mol |
172 187@LB@ | |@LB@5'-AGA...GAUUU U AGAAC...GGU-3'@LB@ GAGCU UUUUAUGG@LB@ :|||| ||::||||@LB@ UUCGA AAGGUACC@LB@3'-UUU...CAGUC U GCAAU...GAA-5'@LB@ | |@LB@ 32 17@LB@@LB@@LB@Energy -6.54 kcal/mol@LB@Hybridization Energy -14.3298 kcal/mol@LB@Unfolding Energy - mRNA 2.92947 kcal/mol@LB@Unfolding Energy - sRNA 4.86077 kcal/mol@LB@@LB@Position - mRNA 173 -- 186@LB@Position - sRNA 18 -- 31@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 18 -- 24@LB@ |
85 |
0.03073 |
0.29 |
ct_522 |
rs3 |
-5.11 |
0.345416 |
189 -- 204 |
18 -- 34 |
30S ribosomal protein S3 |
|
_____________188_______________205\n_____________|_________________|\n5'-UGU...GGCAG_______AAGG______GUCAA...UCA-3'\n______________UAGGAGU_____UAUGG\n______________:||:||:_____:||||\n______________GUCUUCG_____GUACC\n3'-UUU...UCUCA_______AUAAG_____GCAAU...GAA-5'\n_____________|_________________|\n_____________35________________17\n |
189 -- 195 |
28 -- 34 |
-12.0284 kcal/mol |
1.93617 kcal/mol |
4.97803 kcal/mol |
188 205@LB@ | |@LB@5'-UGU...GGCAG AAGG GUCAA...UCA-3'@LB@ UAGGAGU UAUGG@LB@ :||:||: :||||@LB@ GUCUUCG GUACC@LB@3'-UUU...UCUCA AUAAG GCAAU...GAA-5'@LB@ | |@LB@ 35 17@LB@@LB@@LB@Energy -5.11 kcal/mol@LB@Hybridization Energy -12.0284 kcal/mol@LB@Unfolding Energy - mRNA 1.93617 kcal/mol@LB@Unfolding Energy - sRNA 4.97803 kcal/mol@LB@@LB@Position - mRNA 189 -- 204@LB@Position - sRNA 18 -- 34@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 28 -- 34@LB@ |
109 |
0.04235 |
0.3194 |
ct_002 |
gatC |
-8.76 |
0.056639 |
255 -- 282 |
18 -- 44 |
aspartyl/glutamyl-tRNA amidotransferase subunit C |
|
_____________254__________________________283\n_____________|____________________________|\n5'-GAC...AUGCU________________AUGCCCA_____AAGAG...CUA-3'\n______________GCAUUGGAGUUGGAAG_______CGUGG\n______________:||:|:||||::||||_______|:|||\n______________UGUGAUCUCAGUCUUC_______GUACC\n3'-UUU...AUGUU________________GAUAAG______GCAAU...GAA-5'\n_____________|____________________________|\n_____________45___________________________17\n |
261 -- 267 |
32 -- 38 |
-28.0671 kcal/mol |
6.54471 kcal/mol |
12.7603 kcal/mol |
254 283@LB@ | |@LB@5'-GAC...AUGCU AUGCCCA AAGAG...CUA-3'@LB@ GCAUUGGAGUUGGAAG CGUGG@LB@ :||:|:||||::|||| |:|||@LB@ UGUGAUCUCAGUCUUC GUACC@LB@3'-UUU...AUGUU GAUAAG GCAAU...GAA-5'@LB@ | |@LB@ 45 17@LB@@LB@@LB@Energy -8.76 kcal/mol@LB@Hybridization Energy -28.0671 kcal/mol@LB@Unfolding Energy - mRNA 6.54471 kcal/mol@LB@Unfolding Energy - sRNA 12.7603 kcal/mol@LB@@LB@Position - mRNA 255 -- 282@LB@Position - sRNA 18 -- 44@LB@Position Seed - mRNA 261 -- 267@LB@Position Seed - sRNA 32 -- 38@LB@ |
124 |
0.04963 |
0.3262 |
ct_290 |
ptsN_1 |
-8.82 |
0.054773 |
1 -- 15 |
18 -- 32 |
PTS fructose transporter subunit IIA |
|
______________1______________16\n______________|______________|\n___________5'-____G__________GAUGC...UUA-3'\n______________GAGG_UAUUUUGUGG\n______________||:|_||||:::|||\n______________CUUC_AUAAGGUACC\n3'-UUU...UCAGU____G__________GCAAU...GAA-5'\n_____________|_______________|\n_____________33______________17\n |
9 -- 15 |
18 -- 24 |
-16.4794 kcal/mol |
2.69105 kcal/mol |
4.96566 kcal/mol |
1 16@LB@ | |@LB@ 5'- G GAUGC...UUA-3'@LB@ GAGG UAUUUUGUGG@LB@ ||:| ||||:::|||@LB@ CUUC AUAAGGUACC@LB@3'-UUU...UCAGU G GCAAU...GAA-5'@LB@ | |@LB@ 33 17@LB@@LB@@LB@Energy -8.82 kcal/mol@LB@Hybridization Energy -16.4794 kcal/mol@LB@Unfolding Energy - mRNA 2.69105 kcal/mol@LB@Unfolding Energy - sRNA 4.96566 kcal/mol@LB@@LB@Position - mRNA 1 -- 15@LB@Position - sRNA 18 -- 32@LB@Position Seed - mRNA 9 -- 15@LB@Position Seed - sRNA 18 -- 24@LB@ |
127 |
0.0509 |
0.3262 |
ct_808 |
cafE |
-7.80 |
0.095102 |
169 -- 204 |
18 -- 57 |
ribonuclease E |
|
_____________168_________________________________________205\n_____________|___________________________________________|\n5'-GUU...GAGGA_______A______________CAU______ACG_________AAAAC...AAA-3'\n______________CUCCUGU____GAGCGC_AGAG___UUAGGA______CCAUGG\n______________|:|||||____:|:|:|_||||___|:||:|______||||||\n______________GGGGACA____UUUGUG_UCUC___AGUCUU______GGUACC\n3'-UUU...GAAGG_______CAUG______A_____________CGAUAA______GCAAU...GAA-5'\n_____________|___________________________________________|\n_____________58__________________________________________17\n |
169 -- 175 |
51 -- 57 |
-30.1775 kcal/mol |
9.43695 kcal/mol |
12.9362 kcal/mol |
168 205@LB@ | |@LB@5'-GUU...GAGGA A CAU ACG AAAAC...AAA-3'@LB@ CUCCUGU GAGCGC AGAG UUAGGA CCAUGG@LB@ |:||||| :|:|:| |||| |:||:| ||||||@LB@ GGGGACA UUUGUG UCUC AGUCUU GGUACC@LB@3'-UUU...GAAGG CAUG A CGAUAA GCAAU...GAA-5'@LB@ | |@LB@ 58 17@LB@@LB@@LB@Energy -7.80 kcal/mol@LB@Hybridization Energy -30.1775 kcal/mol@LB@Unfolding Energy - mRNA 9.43695 kcal/mol@LB@Unfolding Energy - sRNA 12.9362 kcal/mol@LB@@LB@Position - mRNA 169 -- 204@LB@Position - sRNA 18 -- 57@LB@Position Seed - mRNA 169 -- 175@LB@Position Seed - sRNA 51 -- 57@LB@ |
129 |
0.0523 |
0.3262 |
ct_872 |
pmpH |
-6.76 |
0.162049 |
85 -- 103 |
18 -- 34 |
outer membrane protein PmpH |
|
_____________84__________________104\n_____________|___________________|\n5'-AGA...CAAUA_______A___GG______AAGAU...AUG-3'\n______________UAGAAGU_UAU__CCAUGG\n______________:|||||:_|||__||||||\n______________GUCUUCG_AUA__GGUACC\n3'-UUU...UCUCA___________A_______GCAAU...GAA-5'\n_____________|___________________|\n_____________35__________________17\n |
85 -- 91 |
28 -- 34 |
-16.9306 kcal/mol |
5.18888 kcal/mol |
4.97803 kcal/mol |
84 104@LB@ | |@LB@5'-AGA...CAAUA A GG AAGAU...AUG-3'@LB@ UAGAAGU UAU CCAUGG@LB@ :|||||: ||| ||||||@LB@ GUCUUCG AUA GGUACC@LB@3'-UUU...UCUCA A GCAAU...GAA-5'@LB@ | |@LB@ 35 17@LB@@LB@@LB@Energy -6.76 kcal/mol@LB@Hybridization Energy -16.9306 kcal/mol@LB@Unfolding Energy - mRNA 5.18888 kcal/mol@LB@Unfolding Energy - sRNA 4.97803 kcal/mol@LB@@LB@Position - mRNA 85 -- 103@LB@Position - sRNA 18 -- 34@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 28 -- 34@LB@ |
136 |
0.05474 |
0.3262 |
ct_592 |
sdhA |
-7.43 |
0.115894 |
38 -- 56 |
18 -- 34 |
succinate dehydrogenase flavoprotein subunit |
|
_____________37__________________57\n_____________|___________________|\n5'-UCU...UGUUA___CU_____UU_______GUUUA...UGU-3'\n______________UAG__GCUGU__UCCAUGG\n______________:||__|||:|__|||||||\n______________GUC__CGAUA__AGGUACC\n3'-UUU...UCUCA___UU______________GCAAU...GAA-5'\n_____________|___________________|\n_____________35__________________17\n |
50 -- 56 |
18 -- 24 |
-18.2308 kcal/mol |
5.82664 kcal/mol |
4.97803 kcal/mol |
37 57@LB@ | |@LB@5'-UCU...UGUUA CU UU GUUUA...UGU-3'@LB@ UAG GCUGU UCCAUGG@LB@ :|| |||:| |||||||@LB@ GUC CGAUA AGGUACC@LB@3'-UUU...UCUCA UU GCAAU...GAA-5'@LB@ | |@LB@ 35 17@LB@@LB@@LB@Energy -7.43 kcal/mol@LB@Hybridization Energy -18.2308 kcal/mol@LB@Unfolding Energy - mRNA 5.82664 kcal/mol@LB@Unfolding Energy - sRNA 4.97803 kcal/mol@LB@@LB@Position - mRNA 38 -- 56@LB@Position - sRNA 18 -- 34@LB@Position Seed - mRNA 50 -- 56@LB@Position Seed - sRNA 18 -- 24@LB@ |
142 |
0.0566 |
0.3262 |
ct_284 |
N/A |
-6.95 |
0.147726 |
278 -- 292 |
18 -- 30 |
phospholipase D |
|
_____________277_____________293\n_____________|_______________|\n5'-AUC...ACUAU_________GG____AGACAAAA-3'\n______________AGCUAUUCC__AUGG\n______________|||||||||__||||\n______________UCGAUAAGG__UACC\n3'-UUU...AGUCU_______________GCAAU...GAA-5'\n_____________|_______________|\n_____________31______________17\n |
280 -- 286 |
22 -- 28 |
-16.5616 kcal/mol |
4.87795 kcal/mol |
4.73403 kcal/mol |
277 293@LB@ | |@LB@5'-AUC...ACUAU GG AGACAAAA-3'@LB@ AGCUAUUCC AUGG@LB@ ||||||||| ||||@LB@ UCGAUAAGG UACC@LB@3'-UUU...AGUCU GCAAU...GAA-5'@LB@ | |@LB@ 31 17@LB@@LB@@LB@Energy -6.95 kcal/mol@LB@Hybridization Energy -16.5616 kcal/mol@LB@Unfolding Energy - mRNA 4.87795 kcal/mol@LB@Unfolding Energy - sRNA 4.73403 kcal/mol@LB@@LB@Position - mRNA 278 -- 292@LB@Position - sRNA 18 -- 30@LB@Position Seed - mRNA 280 -- 286@LB@Position Seed - sRNA 22 -- 28@LB@ |