13 |
0.003406 |
0.1836 |
ct_744 |
N/A |
-10.55 |
0.020316 |
225 -- 240 |
17 -- 33 |
|
|
_____________224_______________241\n_____________|_________________|\n5'-AAA...UCUCU_________________UUCUG...AAU-3'\n______________GGAAGCUGUU_CAUGGU\n______________:||||||:||_|||||:\n______________UCUUCGAUAA_GUACCG\n3'-UUU...CUCAG__________G______CAAUC...GAA-5'\n_____________|_________________|\n_____________34________________16\n |
225 -- 231 |
27 -- 33 |
-21.2225 kcal/mol |
5.69382 kcal/mol |
4.97804 kcal/mol |
224 241@LB@ | |@LB@5'-AAA...UCUCU UUCUG...AAU-3'@LB@ GGAAGCUGUU CAUGGU@LB@ :||||||:|| |||||:@LB@ UCUUCGAUAA GUACCG@LB@3'-UUU...CUCAG G CAAUC...GAA-5'@LB@ | |@LB@ 34 16@LB@@LB@@LB@Energy -10.55 kcal/mol@LB@Hybridization Energy -21.2225 kcal/mol@LB@Unfolding Energy - mRNA 5.69382 kcal/mol@LB@Unfolding Energy - sRNA 4.97804 kcal/mol@LB@@LB@Position - mRNA 225 -- 240@LB@Position - sRNA 17 -- 33@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 27 -- 33@LB@ |
14 |
0.003406 |
0.1836 |
ct_744 |
N/A |
-10.55 |
0.020316 |
225 -- 240 |
17 -- 33 |
|
|
_____________224_______________241\n_____________|_________________|\n5'-AAA...UCUCU_________________UUCUG...AAU-3'\n______________GGAAGCUGUU_CAUGGU\n______________:||||||:||_|||||:\n______________UCUUCGAUAA_GUACCG\n3'-UUU...CUCAG__________G______CAAUC...GAA-5'\n_____________|_________________|\n_____________34________________16\n |
225 -- 231 |
27 -- 33 |
-21.2225 kcal/mol |
5.69382 kcal/mol |
4.97804 kcal/mol |
224 241@LB@ | |@LB@5'-AAA...UCUCU UUCUG...AAU-3'@LB@ GGAAGCUGUU CAUGGU@LB@ :||||||:|| |||||:@LB@ UCUUCGAUAA GUACCG@LB@3'-UUU...CUCAG G CAAUC...GAA-5'@LB@ | |@LB@ 34 16@LB@@LB@@LB@Energy -10.55 kcal/mol@LB@Hybridization Energy -21.2225 kcal/mol@LB@Unfolding Energy - mRNA 5.69382 kcal/mol@LB@Unfolding Energy - sRNA 4.97804 kcal/mol@LB@@LB@Position - mRNA 225 -- 240@LB@Position - sRNA 17 -- 33@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 27 -- 33@LB@ |
18 |
0.004135 |
0.1836 |
ct_799 |
N/A |
-8.26 |
0.074627 |
30 -- 52 |
17 -- 35 |
50S ribosomal protein L25/general stress protein Ctc |
|
_____________29______________________53\n_____________|_______________________|\n5'-AUC...AAUAA_________GCAA__A_______AGACG...GAA-3'\n______________UCAGAGGCU____GU_CCAUGGU\n______________|||||:|||____:|_||||||:\n______________AGUCUUCGA____UA_GGUACCG\n3'-UUU...AUCUC_______________A_______CAAUC...GAA-5'\n_____________|_______________________|\n_____________36______________________16\n |
46 -- 52 |
17 -- 23 |
-22.1109 kcal/mol |
8.8748 kcal/mol |
4.9781 kcal/mol |
29 53@LB@ | |@LB@5'-AUC...AAUAA GCAA A AGACG...GAA-3'@LB@ UCAGAGGCU GU CCAUGGU@LB@ |||||:||| :| ||||||:@LB@ AGUCUUCGA UA GGUACCG@LB@3'-UUU...AUCUC A CAAUC...GAA-5'@LB@ | |@LB@ 36 16@LB@@LB@@LB@Energy -8.26 kcal/mol@LB@Hybridization Energy -22.1109 kcal/mol@LB@Unfolding Energy - mRNA 8.8748 kcal/mol@LB@Unfolding Energy - sRNA 4.9781 kcal/mol@LB@@LB@Position - mRNA 30 -- 52@LB@Position - sRNA 17 -- 35@LB@Position Seed - mRNA 46 -- 52@LB@Position Seed - sRNA 17 -- 23@LB@ |
21 |
0.0049 |
0.1918 |
ct_531 |
lpxA |
-7.30 |
0.123824 |
16 -- 37 |
17 -- 34 |
acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase |
|
_____________15_____________________38\n_____________|______________________|\n5'-UUG...GUAUC___A____AAA_______CA__CUGUU...CGC-3'\n______________CAG_AAGC___AUUCCGU__GC\n______________|||_||||___|||||:|__||\n______________GUC_UUCG___UAAGGUA__CG\n3'-UUU...UCUCA________A_________C___CAAUC...GAA-5'\n_____________|______________________|\n_____________35_____________________16\n |
27 -- 33 |
20 -- 26 |
-14.3796 kcal/mol |
2.10386 kcal/mol |
4.97809 kcal/mol |
15 38@LB@ | |@LB@5'-UUG...GUAUC A AAA CA CUGUU...CGC-3'@LB@ CAG AAGC AUUCCGU GC@LB@ ||| |||| |||||:| ||@LB@ GUC UUCG UAAGGUA CG@LB@3'-UUU...UCUCA A C CAAUC...GAA-5'@LB@ | |@LB@ 35 16@LB@@LB@@LB@Energy -7.30 kcal/mol@LB@Hybridization Energy -14.3796 kcal/mol@LB@Unfolding Energy - mRNA 2.10386 kcal/mol@LB@Unfolding Energy - sRNA 4.97809 kcal/mol@LB@@LB@Position - mRNA 16 -- 37@LB@Position - sRNA 17 -- 34@LB@Position Seed - mRNA 27 -- 33@LB@Position Seed - sRNA 20 -- 26@LB@ |
22 |
0.005311 |
0.1984 |
ct_111 |
groES |
-5.40 |
0.305537 |
269 -- 283 |
17 -- 33 |
co-chaperonin GroES |
|
_____________268_______________284\n_____________|_________________|\n5'-AGC...GAAGA_____________CU__AAGAG...UUC-3'\n______________AGAAGCU__UCCA__GC\n______________|||||||__||||__||\n______________UCUUCGA__AGGU__CG\n3'-UUU...CUCAG_______UA____AC__CAAUC...GAA-5'\n_____________|_________________|\n_____________34________________16\n |
269 -- 275 |
27 -- 33 |
-15.094 kcal/mol |
4.71335 kcal/mol |
4.97804 kcal/mol |
268 284@LB@ | |@LB@5'-AGC...GAAGA CU AAGAG...UUC-3'@LB@ AGAAGCU UCCA GC@LB@ ||||||| |||| ||@LB@ UCUUCGA AGGU CG@LB@3'-UUU...CUCAG UA AC CAAUC...GAA-5'@LB@ | |@LB@ 34 16@LB@@LB@@LB@Energy -5.40 kcal/mol@LB@Hybridization Energy -15.094 kcal/mol@LB@Unfolding Energy - mRNA 4.71335 kcal/mol@LB@Unfolding Energy - sRNA 4.97804 kcal/mol@LB@@LB@Position - mRNA 269 -- 283@LB@Position - sRNA 17 -- 33@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 27 -- 33@LB@ |
23 |
0.006311 |
0.2093 |
ct_671 |
N/A |
-7.19 |
0.130787 |
265 -- 279 |
17 -- 34 |
|
|
_____________264_________________280\n_____________|___________________|\n5'-CAA...ACGUA________________A__CUAGA...UCC-3'\n______________CAGAGGCU____CAUG_GC\n______________||||:|||____||||_||\n______________GUCUUCGA____GUAC_CG\n3'-UUU...UCUCA________UAAG_______CAAUC...GAA-5'\n_____________|___________________|\n_____________35__________________16\n |
266 -- 272 |
27 -- 33 |
-15.8996 kcal/mol |
3.73088 kcal/mol |
4.97809 kcal/mol |
264 280@LB@ | |@LB@5'-CAA...ACGUA A CUAGA...UCC-3'@LB@ CAGAGGCU CAUG GC@LB@ ||||:||| |||| ||@LB@ GUCUUCGA GUAC CG@LB@3'-UUU...UCUCA UAAG CAAUC...GAA-5'@LB@ | |@LB@ 35 16@LB@@LB@@LB@Energy -7.19 kcal/mol@LB@Hybridization Energy -15.8996 kcal/mol@LB@Unfolding Energy - mRNA 3.73088 kcal/mol@LB@Unfolding Energy - sRNA 4.97809 kcal/mol@LB@@LB@Position - mRNA 265 -- 279@LB@Position - sRNA 17 -- 34@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 27 -- 33@LB@ |
25 |
0.00654 |
0.2093 |
ct_672 |
N/A |
-9.75 |
0.032384 |
176 -- 205 |
17 -- 33 |
type III secretion system protein |
|
_____________175____________________________206\n_____________|______________________________|\n5'-AUC...GUAGA_______CAUAUAUAAGGU___C_______AGUUG...CUG-3'\n______________AGAAGCU____________AUU_CCAUGGC\n______________|||||||____________|||_|||||||\n______________UCUUCGA____________UAA_GGUACCG\n3'-UUU...CUCAG______________________________CAAUC...GAA-5'\n_____________|______________________________|\n_____________34_____________________________16\n |
199 -- 205 |
17 -- 23 |
-19.3096 kcal/mol |
4.57941 kcal/mol |
4.97804 kcal/mol |
175 206@LB@ | |@LB@5'-AUC...GUAGA CAUAUAUAAGGU C AGUUG...CUG-3'@LB@ AGAAGCU AUU CCAUGGC@LB@ ||||||| ||| |||||||@LB@ UCUUCGA UAA GGUACCG@LB@3'-UUU...CUCAG CAAUC...GAA-5'@LB@ | |@LB@ 34 16@LB@@LB@@LB@Energy -9.75 kcal/mol@LB@Hybridization Energy -19.3096 kcal/mol@LB@Unfolding Energy - mRNA 4.57941 kcal/mol@LB@Unfolding Energy - sRNA 4.97804 kcal/mol@LB@@LB@Position - mRNA 176 -- 205@LB@Position - sRNA 17 -- 33@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 17 -- 23@LB@ |
26 |
0.006621 |
0.2093 |
ct_267 |
ihfA |
-8.59 |
0.062448 |
193 -- 205 |
17 -- 31 |
DNA-binding protein HU |
|
_____________192_____________206\n_____________|_______________|\n5'-UAA...GCAAC_______________AACGA...AUA-3'\n______________AAGCUA__CCAUGGC\n______________||||||__|||||||\n______________UUCGAU__GGUACCG\n3'-UUU...CAGUC______AA_______CAAUC...GAA-5'\n_____________|_______________|\n_____________32______________16\n |
199 -- 205 |
17 -- 23 |
-17.4173 kcal/mol |
3.97125 kcal/mol |
4.86101 kcal/mol |
192 206@LB@ | |@LB@5'-UAA...GCAAC AACGA...AUA-3'@LB@ AAGCUA CCAUGGC@LB@ |||||| |||||||@LB@ UUCGAU GGUACCG@LB@3'-UUU...CAGUC AA CAAUC...GAA-5'@LB@ | |@LB@ 32 16@LB@@LB@@LB@Energy -8.59 kcal/mol@LB@Hybridization Energy -17.4173 kcal/mol@LB@Unfolding Energy - mRNA 3.97125 kcal/mol@LB@Unfolding Energy - sRNA 4.86101 kcal/mol@LB@@LB@Position - mRNA 193 -- 205@LB@Position - sRNA 17 -- 31@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 17 -- 23@LB@ |
28 |
0.007489 |
0.2199 |
ct_755 |
groEL_3 |
-5.45 |
0.299165 |
283 -- 296 |
17 -- 33 |
chaperonin GroEL |
|
_____________282_______________297\n_____________|_________________|\n5'-CAC...AGUAA_________________CCCG-3'\n______________AGGGGU___UUUAUGGC\n______________||::|:___|::|||||\n______________UCUUCG___AGGUACCG\n3'-UUU...CUCAG______AUA________CAAUC...GAA-5'\n_____________|_________________|\n_____________34________________16\n |
290 -- 296 |
17 -- 23 |
-13.7025 kcal/mol |
3.27337 kcal/mol |
4.97804 kcal/mol |
282 297@LB@ | |@LB@5'-CAC...AGUAA CCCG-3'@LB@ AGGGGU UUUAUGGC@LB@ ||::|: |::|||||@LB@ UCUUCG AGGUACCG@LB@3'-UUU...CUCAG AUA CAAUC...GAA-5'@LB@ | |@LB@ 34 16@LB@@LB@@LB@Energy -5.45 kcal/mol@LB@Hybridization Energy -13.7025 kcal/mol@LB@Unfolding Energy - mRNA 3.27337 kcal/mol@LB@Unfolding Energy - sRNA 4.97804 kcal/mol@LB@@LB@Position - mRNA 283 -- 296@LB@Position - sRNA 17 -- 33@LB@Position Seed - mRNA 290 -- 296@LB@Position Seed - sRNA 17 -- 23@LB@ |
29 |
0.008327 |
0.236 |
ct_722 |
pgm |
-9.49 |
0.037543 |
218 -- 230 |
17 -- 29 |
2 3-bisphosphoglycerate-dependent phosphoglycerate mutase |
|
_____________217___________231\n_____________|_____________|\n5'-CUU...AUCUU____CG_______CAAUC...UUC-3'\n______________GCUA__CCAUGGC\n______________||||__|||||||\n______________CGAU__GGUACCG\n3'-UUU...GUCUU____AA_______CAAUC...GAA-5'\n_____________|_____________|\n_____________30____________16\n |
224 -- 230 |
17 -- 23 |
-17.8075 kcal/mol |
3.64492 kcal/mol |
4.66832 kcal/mol |
217 231@LB@ | |@LB@5'-CUU...AUCUU CG CAAUC...UUC-3'@LB@ GCUA CCAUGGC@LB@ |||| |||||||@LB@ CGAU GGUACCG@LB@3'-UUU...GUCUU AA CAAUC...GAA-5'@LB@ | |@LB@ 30 16@LB@@LB@@LB@Energy -9.49 kcal/mol@LB@Hybridization Energy -17.8075 kcal/mol@LB@Unfolding Energy - mRNA 3.64492 kcal/mol@LB@Unfolding Energy - sRNA 4.66832 kcal/mol@LB@@LB@Position - mRNA 218 -- 230@LB@Position - sRNA 17 -- 29@LB@Position Seed - mRNA 224 -- 230@LB@Position Seed - sRNA 17 -- 23@LB@ |