9 |
4.743e-05 |
0.01855 |
b1204 |
pth |
-17.38 |
0.004387 |
162 -- 190 |
43 -- 74 |
peptidyl-tRNA hydrolase |
|
_____________161_______________________________191\n_____________|_________________________________|\n5'-UGG...AGUAA________________A_____ACA________ACAAA...AGC-3'\n______________ACUACGCGC__CAGUU___UGU___CACUCAGG\n______________|||||:|:|__||:||___|||___||||||||\n______________UGAUGUGUG__GUUAA___ACA___GUGAGUCC\n3'-UUU...GUUUC_________UC_____GCA___AA_________CCUAA...GCA-5'\n_____________|_________________________________|\n_____________75________________________________42\n |
184 -- 190 |
43 -- 49 |
-27.969 kcal/mol |
6.24318 kcal/mol |
4.35222 kcal/mol |
161 191@LB@ | |@LB@5'-UGG...AGUAA A ACA ACAAA...AGC-3'@LB@ ACUACGCGC CAGUU UGU CACUCAGG@LB@ |||||:|:| ||:|| ||| ||||||||@LB@ UGAUGUGUG GUUAA ACA GUGAGUCC@LB@3'-UUU...GUUUC UC GCA AA CCUAA...GCA-5'@LB@ | |@LB@ 75 42@LB@@LB@@LB@Energy -17.38 kcal/mol@LB@Hybridization Energy -27.969 kcal/mol@LB@Unfolding Energy - mRNA 6.24318 kcal/mol@LB@Unfolding Energy - sRNA 4.35222 kcal/mol@LB@@LB@Position - mRNA 162 -- 190@LB@Position - sRNA 43 -- 74@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 43 -- 49@LB@ |
169 |
0.008352 |
0.1723 |
b1222 |
narX |
-15.18 |
0.018797 |
58 -- 74 |
61 -- 75 |
sensory histidine kinase in two-component regulatory system with NarL |
|
_____________57________________75\n_____________|_________________|\n5'-AAA...AAAGC_____AC__________AUAAG...CUG-3'\n______________GACUA__CACACGGCAA\n______________|||||__|||||:||||\n______________CUGAU__GUGUGUCGUU\n3'-UUU...CGUUU_________________AAGCA...GCA-5'\n_____________|_________________|\n_____________76________________60\n |
68 -- 74 |
61 -- 67 |
-20.5903 kcal/mol |
2.1582 kcal/mol |
3.25399 kcal/mol |
57 75@LB@ | |@LB@5'-AAA...AAAGC AC AUAAG...CUG-3'@LB@ GACUA CACACGGCAA@LB@ ||||| |||||:||||@LB@ CUGAU GUGUGUCGUU@LB@3'-UUU...CGUUU AAGCA...GCA-5'@LB@ | |@LB@ 76 60@LB@@LB@@LB@Energy -15.18 kcal/mol@LB@Hybridization Energy -20.5903 kcal/mol@LB@Unfolding Energy - mRNA 2.1582 kcal/mol@LB@Unfolding Energy - sRNA 3.25399 kcal/mol@LB@@LB@Position - mRNA 58 -- 74@LB@Position - sRNA 61 -- 75@LB@Position Seed - mRNA 68 -- 74@LB@Position Seed - sRNA 61 -- 67@LB@ |
46 |
0.001357 |
0.1038 |
b1235 |
rssB |
-13.33 |
0.053430 |
184 -- 194 |
40 -- 50 |
PcnB-degradosome interaction factor; response regulator |
|
_____________183_________195\n_____________|___________|\n5'-AAU...AAAGC__G________GAGAA...CAA-3'\n______________CA_UCAGGGGA\n______________||_||||||||\n______________GU_AGUCCCCU\n3'-UUU...ACAAA__G________AAAGG...GCA-5'\n_____________|___________|\n_____________51__________39\n |
188 -- 194 |
40 -- 46 |
-19.1981 kcal/mol |
4.11697 kcal/mol |
1.75243 kcal/mol |
183 195@LB@ | |@LB@5'-AAU...AAAGC G GAGAA...CAA-3'@LB@ CA UCAGGGGA@LB@ || ||||||||@LB@ GU AGUCCCCU@LB@3'-UUU...ACAAA G AAAGG...GCA-5'@LB@ | |@LB@ 51 39@LB@@LB@@LB@Energy -13.33 kcal/mol@LB@Hybridization Energy -19.1981 kcal/mol@LB@Unfolding Energy - mRNA 4.11697 kcal/mol@LB@Unfolding Energy - sRNA 1.75243 kcal/mol@LB@@LB@Position - mRNA 184 -- 194@LB@Position - sRNA 40 -- 50@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 40 -- 46@LB@ |
176 |
0.008803 |
0.1747 |
b1242 |
ychE |
-11.39 |
0.137124 |
41 -- 64 |
45 -- 75 |
UPF0056 family inner membrane protein |
|
_____________40______________________________65\n_____________|_______________________________|\n5'-CAU...UUGGU____________________________A__ACUAG...GCA-3'\n______________GGCUACAU_UAGCA______UGUUUUGC_CA\n______________|:|||||:_:||||______|||||::|_||\n______________CUGAUGUG_GUCGU______ACAAAGUG_GU\n3'-UUU...CGUUU________U_____UAAGCA________A__CCCCU...GCA-5'\n_____________|_______________________________|\n_____________76______________________________44\n |
55 -- 61 |
48 -- 54 |
-19.9041 kcal/mol |
4.77357 kcal/mol |
3.74078 kcal/mol |
40 65@LB@ | |@LB@5'-CAU...UUGGU A ACUAG...GCA-3'@LB@ GGCUACAU UAGCA UGUUUUGC CA@LB@ |:|||||: :|||| |||||::| ||@LB@ CUGAUGUG GUCGU ACAAAGUG GU@LB@3'-UUU...CGUUU U UAAGCA A CCCCU...GCA-5'@LB@ | |@LB@ 76 44@LB@@LB@@LB@Energy -11.39 kcal/mol@LB@Hybridization Energy -19.9041 kcal/mol@LB@Unfolding Energy - mRNA 4.77357 kcal/mol@LB@Unfolding Energy - sRNA 3.74078 kcal/mol@LB@@LB@Position - mRNA 41 -- 64@LB@Position - sRNA 45 -- 75@LB@Position Seed - mRNA 55 -- 61@LB@Position Seed - sRNA 48 -- 54@LB@ |
187 |
0.009506 |
0.1776 |
b1243 |
oppA |
-10.52 |
0.199375 |
11 -- 17 |
40 -- 46 |
oligopeptide ABC transporter periplasmic binding protein |
|
_____________10______18\n_____________|_______|\n5'-UGU...CUCGA_______GACAC...UCA-3'\n______________CAGGGGA\n______________|||||||\n______________GUCCCCU\n3'-UUU...AGUGA_______AAAGG...GCA-5'\n_____________|_______|\n_____________47______39\n |
11 -- 17 |
40 -- 46 |
-13.6251 kcal/mol |
1.75344 kcal/mol |
1.35582 kcal/mol |
10 18@LB@ | |@LB@5'-UGU...CUCGA GACAC...UCA-3'@LB@ CAGGGGA@LB@ |||||||@LB@ GUCCCCU@LB@3'-UUU...AGUGA AAAGG...GCA-5'@LB@ | |@LB@ 47 39@LB@@LB@@LB@Energy -10.52 kcal/mol@LB@Hybridization Energy -13.6251 kcal/mol@LB@Unfolding Energy - mRNA 1.75344 kcal/mol@LB@Unfolding Energy - sRNA 1.35582 kcal/mol@LB@@LB@Position - mRNA 11 -- 17@LB@Position - sRNA 40 -- 46@LB@Position Seed - mRNA 11 -- 17@LB@Position Seed - sRNA 40 -- 46@LB@ |
124 |
0.005471 |
0.1553 |
b1249 |
clsA |
-8.47 |
0.418250 |
164 -- 196 |
34 -- 71 |
cardiolipin synthase 1 |
|
_____________163____________________________________197\n_____________|______________________________________|\n5'-GUC...CGUAA__U____A____G__C_______AAA____________AUCUA...CAG-3'\n______________AC_CAUA_CAAU_CG___UUUCA______GGAUUUCUA\n______________||_||:|_||||_||___|||||______|||||||:|\n______________UG_GUGU_GUUA_GC___AAAGU______CCUAAAGGU\n3'-UUU...UCUGA__U____C____A__AAC_____GAGUCC_________ACGAA...GCA-5'\n_____________|______________________________________|\n_____________72_____________________________________33\n |
190 -- 196 |
34 -- 40 |
-20.3655 kcal/mol |
7.10457 kcal/mol |
4.79237 kcal/mol |
163 197@LB@ | |@LB@5'-GUC...CGUAA U A G C AAA AUCUA...CAG-3'@LB@ AC CAUA CAAU CG UUUCA GGAUUUCUA@LB@ || ||:| |||| || ||||| |||||||:|@LB@ UG GUGU GUUA GC AAAGU CCUAAAGGU@LB@3'-UUU...UCUGA U C A AAC GAGUCC ACGAA...GCA-5'@LB@ | |@LB@ 72 33@LB@@LB@@LB@Energy -8.47 kcal/mol@LB@Hybridization Energy -20.3655 kcal/mol@LB@Unfolding Energy - mRNA 7.10457 kcal/mol@LB@Unfolding Energy - sRNA 4.79237 kcal/mol@LB@@LB@Position - mRNA 164 -- 196@LB@Position - sRNA 34 -- 71@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 34 -- 40@LB@ |
89 |
0.003963 |
0.1538 |
b1252 |
tonB |
-10.58 |
0.194225 |
25 -- 43 |
64 -- 82 |
membrane spanning protein in TonB-ExbB-ExbD transport complex |
|
_____________24___________________44\n_____________|____________________|\n5'-AGU...UGAAA_________U__________AAAGA...AUC-3'\n______________GGGCGAAGA_CUGCA_ACGG\n______________||||:||||_||:||_||:|\n______________CCCGUUUCU_GAUGU_UGUC\n3'-UUU...CUCUA_______________G____GUUAA...GCA-5'\n_____________|____________________|\n_____________83___________________63\n |
25 -- 31 |
76 -- 82 |
-25.6168 kcal/mol |
4.83236 kcal/mol |
10.2054 kcal/mol |
24 44@LB@ | |@LB@5'-AGU...UGAAA U AAAGA...AUC-3'@LB@ GGGCGAAGA CUGCA ACGG@LB@ ||||:|||| ||:|| ||:|@LB@ CCCGUUUCU GAUGU UGUC@LB@3'-UUU...CUCUA G GUUAA...GCA-5'@LB@ | |@LB@ 83 63@LB@@LB@@LB@Energy -10.58 kcal/mol@LB@Hybridization Energy -25.6168 kcal/mol@LB@Unfolding Energy - mRNA 4.83236 kcal/mol@LB@Unfolding Energy - sRNA 10.2054 kcal/mol@LB@@LB@Position - mRNA 25 -- 43@LB@Position - sRNA 64 -- 82@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 76 -- 82@LB@ |
158 |
0.007677 |
0.1668 |
b1267 |
yciO |
-9.92 |
0.252655 |
228 -- 242 |
61 -- 75 |
putative RNA binding protein |
|
_____________227_____________243\n_____________|_______________|\n5'-GCG...AUCCU___A__C________CGUCU...CAA-3'\n______________GAU_AC_CACAGCAA\n______________||:_||_||||||||\n______________CUG_UG_GUGUCGUU\n3'-UUU...CGUUU___A__U________AAGCA...GCA-5'\n_____________|_______________|\n_____________76______________60\n |
236 -- 242 |
61 -- 67 |
-14.6343 kcal/mol |
1.46218 kcal/mol |
3.25399 kcal/mol |
227 243@LB@ | |@LB@5'-GCG...AUCCU A C CGUCU...CAA-3'@LB@ GAU AC CACAGCAA@LB@ ||: || ||||||||@LB@ CUG UG GUGUCGUU@LB@3'-UUU...CGUUU A U AAGCA...GCA-5'@LB@ | |@LB@ 76 60@LB@@LB@@LB@Energy -9.92 kcal/mol@LB@Hybridization Energy -14.6343 kcal/mol@LB@Unfolding Energy - mRNA 1.46218 kcal/mol@LB@Unfolding Energy - sRNA 3.25399 kcal/mol@LB@@LB@Position - mRNA 228 -- 242@LB@Position - sRNA 61 -- 75@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 61 -- 67@LB@ |
39 |
0.0006857 |
0.06187 |
b1305 |
pspB |
-16.08 |
0.010660 |
268 -- 296 |
48 -- 75 |
psp operon transcription co-activator |
|
_____________267____________________________297\n_____________|______________________________|\n5'-AUU...GUUAU_______U______________CUGG____AGUG-3'\n______________GGCUGCA_UACAGCAAU_CGUU____UCGC\n______________|:||:||_:||||||||_||||____||:|\n______________CUGAUGU_GUGUCGUUA_GCAA____AGUG\n3'-UUU...CGUUU_________________A____CAA_____AGUCC...GCA-5'\n_____________|______________________________|\n_____________76_____________________________47\n |
278 -- 284 |
60 -- 66 |
-29.5086 kcal/mol |
9.74074 kcal/mol |
3.68696 kcal/mol |
267 297@LB@ | |@LB@5'-AUU...GUUAU U CUGG AGUG-3'@LB@ GGCUGCA UACAGCAAU CGUU UCGC@LB@ |:||:|| :|||||||| |||| ||:|@LB@ CUGAUGU GUGUCGUUA GCAA AGUG@LB@3'-UUU...CGUUU A CAA AGUCC...GCA-5'@LB@ | |@LB@ 76 47@LB@@LB@@LB@Energy -16.08 kcal/mol@LB@Hybridization Energy -29.5086 kcal/mol@LB@Unfolding Energy - mRNA 9.74074 kcal/mol@LB@Unfolding Energy - sRNA 3.68696 kcal/mol@LB@@LB@Position - mRNA 268 -- 296@LB@Position - sRNA 48 -- 75@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 60 -- 66@LB@ |
66 |
0.002697 |
0.1417 |
b1306 |
pspC |
-11.06 |
0.158336 |
44 -- 64 |
55 -- 75 |
psp operon transcription co-activator |
|
_____________43_____________________65\n_____________|______________________|\n5'-CCG...GUUAU_______U______________CUGGU...CGG-3'\n______________GGCUGCA_UACAGCAAU_CGUU\n______________|:||:||_:||||||||_||||\n______________CUGAUGU_GUGUCGUUA_GCAA\n3'-UUU...CGUUU_________________A____CAAAG...GCA-5'\n_____________|______________________|\n_____________76_____________________54\n |
54 -- 60 |
60 -- 66 |
-24.9269 kcal/mol |
10.2549 kcal/mol |
3.6092 kcal/mol |
43 65@LB@ | |@LB@5'-CCG...GUUAU U CUGGU...CGG-3'@LB@ GGCUGCA UACAGCAAU CGUU@LB@ |:||:|| :|||||||| ||||@LB@ CUGAUGU GUGUCGUUA GCAA@LB@3'-UUU...CGUUU A CAAAG...GCA-5'@LB@ | |@LB@ 76 54@LB@@LB@@LB@Energy -11.06 kcal/mol@LB@Hybridization Energy -24.9269 kcal/mol@LB@Unfolding Energy - mRNA 10.2549 kcal/mol@LB@Unfolding Energy - sRNA 3.6092 kcal/mol@LB@@LB@Position - mRNA 44 -- 64@LB@Position - sRNA 55 -- 75@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 60 -- 66@LB@ |