| 179 |
0.009001 |
0.1747 |
b2725 |
hycA |
-11.58 |
0.125812 |
239 -- 264 |
43 -- 70 |
regulator of the transcriptional regulator FhlA |
|
_____________238_____________________________265\n_____________|_______________________________|\n5'-UUA...UACAU__________CA____________CUA____ACCAG...AGG-3'\n______________CGCACAGCGG__UCG_____UCGC___CAGG\n______________|:||||||::__|||_____||:|___||||\n______________GUGUGUCGUU__AGC_____AGUG___GUCC\n3'-UUU...CUGAU__________A____AACAA____A______CCUAA...GCA-5'\n_____________|_______________________________|\n_____________71______________________________42\n |
242 -- 248 |
61 -- 67 |
-23.0547 kcal/mol |
7.15003 kcal/mol |
4.32399 kcal/mol |
238 265@LB@ | |@LB@5'-UUA...UACAU CA CUA ACCAG...AGG-3'@LB@ CGCACAGCGG UCG UCGC CAGG@LB@ |:||||||:: ||| ||:| ||||@LB@ GUGUGUCGUU AGC AGUG GUCC@LB@3'-UUU...CUGAU A AACAA A CCUAA...GCA-5'@LB@ | |@LB@ 71 42@LB@@LB@@LB@Energy -11.58 kcal/mol@LB@Hybridization Energy -23.0547 kcal/mol@LB@Unfolding Energy - mRNA 7.15003 kcal/mol@LB@Unfolding Energy - sRNA 4.32399 kcal/mol@LB@@LB@Position - mRNA 239 -- 264@LB@Position - sRNA 43 -- 70@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 61 -- 67@LB@ |
| 2 |
1.464e-07 |
0.0002576 |
b2741 |
rpoS |
-16.90 |
0.006155 |
67 -- 107 |
33 -- 71 |
RNA polymerase sigma S (sigma 38) factor |
|
_____________66______________________________________________108\n_____________|_______________________________________________|\n5'-CGG...GUUCA______UU___UUUUGAA______________A_______AA_____AAACC...AGG-3'\n______________ACACGC__GCA_______AUUCGUU_____AC__AGGGGA__UCCGU\n______________||||:|__|||_______|||||||_____||__||||||__|||:|\n______________UGUGUG__CGU_______UAAGCAA_____UG__UCCCCU__AGGUA\n3'-UUU...UCUGA______U__________________CAAAG__AG______AA_____CGAAU...GCA-5'\n_____________|_______________________________________________|\n_____________72______________________________________________32\n |
85 -- 91 |
55 -- 61 |
-29.972 kcal/mol |
8.28292 kcal/mol |
4.7924 kcal/mol |
66 108@LB@ | |@LB@5'-CGG...GUUCA UU UUUUGAA A AA AAACC...AGG-3'@LB@ ACACGC GCA AUUCGUU AC AGGGGA UCCGU@LB@ ||||:| ||| ||||||| || |||||| |||:|@LB@ UGUGUG CGU UAAGCAA UG UCCCCU AGGUA@LB@3'-UUU...UCUGA U CAAAG AG AA CGAAU...GCA-5'@LB@ | |@LB@ 72 32@LB@@LB@@LB@Energy -16.90 kcal/mol@LB@Hybridization Energy -29.972 kcal/mol@LB@Unfolding Energy - mRNA 8.28292 kcal/mol@LB@Unfolding Energy - sRNA 4.7924 kcal/mol@LB@@LB@Position - mRNA 67 -- 107@LB@Position - sRNA 33 -- 71@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 63 |
0.002639 |
0.1417 |
b2751 |
cysN |
-11.35 |
0.139541 |
181 -- 198 |
34 -- 49 |
sulfate adenylyltransferase subunit 1 |
|
_____________180________________199\n_____________|__________________|\n5'-AGU...AAAAA__G_______U_______AGAUG...GUG-3'\n______________AC_UCAGGGG_AUUUUUA\n______________||_|||||||_||||::|\n______________UG_AGUCCCC_UAAAGGU\n3'-UUU...CAAAG__________________ACGAA...GCA-5'\n_____________|__________________|\n_____________50_________________33\n |
184 -- 190 |
41 -- 47 |
-17.8149 kcal/mol |
4.64155 kcal/mol |
1.82276 kcal/mol |
180 199@LB@ | |@LB@5'-AGU...AAAAA G U AGAUG...GUG-3'@LB@ AC UCAGGGG AUUUUUA@LB@ || ||||||| ||||::|@LB@ UG AGUCCCC UAAAGGU@LB@3'-UUU...CAAAG ACGAA...GCA-5'@LB@ | |@LB@ 50 33@LB@@LB@@LB@Energy -11.35 kcal/mol@LB@Hybridization Energy -17.8149 kcal/mol@LB@Unfolding Energy - mRNA 4.64155 kcal/mol@LB@Unfolding Energy - sRNA 1.82276 kcal/mol@LB@@LB@Position - mRNA 181 -- 198@LB@Position - sRNA 34 -- 49@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 8 |
3.984e-05 |
0.01752 |
b2752 |
cysD |
-11.53 |
0.128779 |
103 -- 132 |
45 -- 74 |
sulfate adenylyltransferase subunit 2 |
|
_____________102____________________________133\n_____________|______________________________|\n5'-GCC...AAGGA_____U___UC_____G__AA_________UUCUC...UCU-3'\n______________ACUAC_CAU__UAAUU_GU__UUUCAUUCG\n______________|||||_||:__:||||_||__|||||:||:\n______________UGAUG_GUG__GUUAA_CA__AAAGUGAGU\n3'-UUU...GUUUC_____U___UC_____G__AC_________CCCCU...GCA-5'\n_____________|______________________________|\n_____________75_____________________________44\n |
126 -- 132 |
45 -- 51 |
-20.8412 kcal/mol |
5.57115 kcal/mol |
3.74056 kcal/mol |
102 133@LB@ | |@LB@5'-GCC...AAGGA U UC G AA UUCUC...UCU-3'@LB@ ACUAC CAU UAAUU GU UUUCAUUCG@LB@ ||||| ||: :|||| || |||||:||:@LB@ UGAUG GUG GUUAA CA AAAGUGAGU@LB@3'-UUU...GUUUC U UC G AC CCCCU...GCA-5'@LB@ | |@LB@ 75 44@LB@@LB@@LB@Energy -11.53 kcal/mol@LB@Hybridization Energy -20.8412 kcal/mol@LB@Unfolding Energy - mRNA 5.57115 kcal/mol@LB@Unfolding Energy - sRNA 3.74056 kcal/mol@LB@@LB@Position - mRNA 103 -- 132@LB@Position - sRNA 45 -- 74@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 200 |
0.01028 |
0.1776 |
b2803 |
fucK |
-15.72 |
0.013449 |
16 -- 30 |
62 -- 76 |
L-fuculokinase |
|
_____________15______________31\n_____________|_______________|\n5'-AUC...UGCCU_______________UGGAU...CGC-3'\n______________GGGCUGCGCACGGCA\n______________:|:||:|:|||:|||\n______________UCUGAUGUGUGUCGU\n3'-UUU...CCGUU_______________UAAGC...GCA-5'\n_____________|_______________|\n_____________77______________61\n |
24 -- 30 |
62 -- 68 |
-24.6836 kcal/mol |
5.71098 kcal/mol |
3.25371 kcal/mol |
15 31@LB@ | |@LB@5'-AUC...UGCCU UGGAU...CGC-3'@LB@ GGGCUGCGCACGGCA@LB@ :|:||:|:|||:|||@LB@ UCUGAUGUGUGUCGU@LB@3'-UUU...CCGUU UAAGC...GCA-5'@LB@ | |@LB@ 77 61@LB@@LB@@LB@Energy -15.72 kcal/mol@LB@Hybridization Energy -24.6836 kcal/mol@LB@Unfolding Energy - mRNA 5.71098 kcal/mol@LB@Unfolding Energy - sRNA 3.25371 kcal/mol@LB@@LB@Position - mRNA 16 -- 30@LB@Position - sRNA 62 -- 76@LB@Position Seed - mRNA 24 -- 30@LB@Position Seed - sRNA 62 -- 68@LB@ |
| 18 |
0.0001516 |
0.02826 |
b2817 |
amiC |
-14.62 |
0.026197 |
167 -- 204 |
31 -- 70 |
N-acetylmuramoyl-L-alanine amidase |
|
_____________166______________________________________205\n_____________|________________________________________|\n5'-AGU...CUUGU________UUAGAUUUC___________A__GG_______CAGGA...UCA-3'\n______________UACACAGC_________UUUUGCUCGGG_GA____CAUGU\n______________:|||||||_________|||::|||:||_||____||||:\n______________GUGUGUCG_________AAAGUGAGUCC_CU____GUACG\n3'-UUU...CUGAU________UUAAGCAAC___________C__AAAG_____AAUAU...GCA-5'\n_____________|________________________________________|\n_____________71_______________________________________30\n |
188 -- 194 |
43 -- 49 |
-32.0387 kcal/mol |
10.1821 kcal/mol |
7.23824 kcal/mol |
166 205@LB@ | |@LB@5'-AGU...CUUGU UUAGAUUUC A GG CAGGA...UCA-3'@LB@ UACACAGC UUUUGCUCGGG GA CAUGU@LB@ :||||||| |||::|||:|| || ||||:@LB@ GUGUGUCG AAAGUGAGUCC CU GUACG@LB@3'-UUU...CUGAU UUAAGCAAC C AAAG AAUAU...GCA-5'@LB@ | |@LB@ 71 30@LB@@LB@@LB@Energy -14.62 kcal/mol@LB@Hybridization Energy -32.0387 kcal/mol@LB@Unfolding Energy - mRNA 10.1821 kcal/mol@LB@Unfolding Energy - sRNA 7.23824 kcal/mol@LB@@LB@Position - mRNA 167 -- 204@LB@Position - sRNA 31 -- 70@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 50 |
0.001668 |
0.1153 |
b2821 |
ptrA |
-10.19 |
0.227412 |
3 -- 12 |
46 -- 55 |
protease III |
|
_____________2__________13\n_____________|__________|\n_________5'-GC__________UAAUC...CCA-3'\n______________UGUUUCGCUU\n______________||||||:||:\n______________ACAAAGUGAG\n3'-UUU...AAGCA__________UCCCC...GCA-5'\n_____________|__________|\n_____________56_________45\n |
6 -- 12 |
46 -- 52 |
-11.8599 kcal/mol |
0.772948 kcal/mol |
0.89782 kcal/mol |
2 13@LB@ | |@LB@ 5'-GC UAAUC...CCA-3'@LB@ UGUUUCGCUU@LB@ ||||||:||:@LB@ ACAAAGUGAG@LB@3'-UUU...AAGCA UCCCC...GCA-5'@LB@ | |@LB@ 56 45@LB@@LB@@LB@Energy -10.19 kcal/mol@LB@Hybridization Energy -11.8599 kcal/mol@LB@Unfolding Energy - mRNA 0.772948 kcal/mol@LB@Unfolding Energy - sRNA 0.89782 kcal/mol@LB@@LB@Position - mRNA 3 -- 12@LB@Position - sRNA 46 -- 55@LB@Position Seed - mRNA 6 -- 12@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 128 |
0.005802 |
0.1577 |
b2889 |
idi |
-10.08 |
0.237455 |
129 -- 166 |
33 -- 74 |
isopentenyl diphosphate isomerase |
|
_____________128________________________________________167\n_____________|__________________________________________|\n5'-CUC...UAAAC_______UU___UAA__A___________UUCAAUUA_____AAUGA...UCG-3'\n______________GCU_CAC__GGU___UC____UUUCACUC________UCUAU\n______________:||_|||__:|:___||____||||||||________||:||\n______________UGA_GUG__UCG___AG____AAAGUGAG________AGGUA\n3'-UUU...GUUUC___U___UG___UUA__CAAC________UCCCCUAA_____CGAAU...GCA-5'\n_____________|__________________________________________|\n_____________75_________________________________________32\n |
147 -- 153 |
46 -- 52 |
-18.0124 kcal/mol |
3.11816 kcal/mol |
4.81602 kcal/mol |
128 167@LB@ | |@LB@5'-CUC...UAAAC UU UAA A UUCAAUUA AAUGA...UCG-3'@LB@ GCU CAC GGU UC UUUCACUC UCUAU@LB@ :|| ||| :|: || |||||||| ||:||@LB@ UGA GUG UCG AG AAAGUGAG AGGUA@LB@3'-UUU...GUUUC U UG UUA CAAC UCCCCUAA CGAAU...GCA-5'@LB@ | |@LB@ 75 32@LB@@LB@@LB@Energy -10.08 kcal/mol@LB@Hybridization Energy -18.0124 kcal/mol@LB@Unfolding Energy - mRNA 3.11816 kcal/mol@LB@Unfolding Energy - sRNA 4.81602 kcal/mol@LB@@LB@Position - mRNA 129 -- 166@LB@Position - sRNA 33 -- 74@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 144 |
0.006569 |
0.1605 |
b2900 |
yqfB |
-12.46 |
0.083290 |
200 -- 238 |
34 -- 70 |
UPF0267 family protein |
|
_____________199_______________________________________239\n_____________|_________________________________________|\n5'-UUC...AGUAC________CAAA__ACA________UUUUUCAAC_______GGAUG...UCA-3'\n______________CAUGCAGC____CG_____UCACUU_________GUUUCCA\n______________||::||||____||_____|||||:_________:||||||\n______________GUGUGUCG____GC_____AGUGAG_________UAAAGGU\n3'-UUU...CUGAU________UUAA__AACAA______UCCCC___________ACGAA...GCA-5'\n_____________|_________________________________________|\n_____________71________________________________________33\n |
232 -- 238 |
34 -- 40 |
-21.1736 kcal/mol |
3.92715 kcal/mol |
4.79237 kcal/mol |
199 239@LB@ | |@LB@5'-UUC...AGUAC CAAA ACA UUUUUCAAC GGAUG...UCA-3'@LB@ CAUGCAGC CG UCACUU GUUUCCA@LB@ ||::|||| || |||||: :||||||@LB@ GUGUGUCG GC AGUGAG UAAAGGU@LB@3'-UUU...CUGAU UUAA AACAA UCCCC ACGAA...GCA-5'@LB@ | |@LB@ 71 33@LB@@LB@@LB@Energy -12.46 kcal/mol@LB@Hybridization Energy -21.1736 kcal/mol@LB@Unfolding Energy - mRNA 3.92715 kcal/mol@LB@Unfolding Energy - sRNA 4.79237 kcal/mol@LB@@LB@Position - mRNA 200 -- 238@LB@Position - sRNA 34 -- 70@LB@Position Seed - mRNA 232 -- 238@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 33 |
0.0005309 |
0.05552 |
b2905 |
gcvT |
-15.66 |
0.013961 |
227 -- 265 |
34 -- 74 |
aminomethyltransferase tetrahydrofolate-dependent subunit (T protein) of glycine cleavage complex |
|
_____________226___________________________________________266\n_____________|_____________________________________________|\n5'-CUG...UACGA__A_______________CG__________CAU__U_________CGGCU...AAA-3'\n______________AC_ACACAC_GC__UUUG__G___CGCUCG___GG_GGAUUUCCA\n______________||_||||||_||__||:|__|___|:|||:___||_|||||||||\n______________UG_UGUGUG_CG__AAGC__C___GUGAGU___CC_CCUAAAGGU\n3'-UUU...GUUUC__A______U__UU____AA_AAA_____________________ACGAA...GCA-5'\n_____________|_____________________________________________|\n_____________75____________________________________________33\n |
259 -- 265 |
34 -- 40 |
-32.8395 kcal/mol |
12.3643 kcal/mol |
4.81599 kcal/mol |
226 266@LB@ | |@LB@5'-CUG...UACGA A CG CAU U CGGCU...AAA-3'@LB@ AC ACACAC GC UUUG G CGCUCG GG GGAUUUCCA@LB@ || |||||| || ||:| | |:|||: || |||||||||@LB@ UG UGUGUG CG AAGC C GUGAGU CC CCUAAAGGU@LB@3'-UUU...GUUUC A U UU AA AAA ACGAA...GCA-5'@LB@ | |@LB@ 75 33@LB@@LB@@LB@Energy -15.66 kcal/mol@LB@Hybridization Energy -32.8395 kcal/mol@LB@Unfolding Energy - mRNA 12.3643 kcal/mol@LB@Unfolding Energy - sRNA 4.81599 kcal/mol@LB@@LB@Position - mRNA 227 -- 265@LB@Position - sRNA 34 -- 74@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 34 -- 40@LB@ |
