55 |
0.001955 |
0.1223 |
b0840 |
deoR |
-10.34 |
0.214583 |
216 -- 260 |
60 -- 103 |
deoxyribose-5-phosphate-inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx |
|
_____________215____________________________________________261\n_____________|______________________________________________|\n5'-GUG...GUCGC_______G________C__C__CU_____A____AA__________AAGUU...UUU-3'\n______________GAAGAGC_UAUCG_GG_AG_UG__GCAAG_AUUA__ACGCAGCGAU\n______________:||:|||_:||||_||_||_||__||||:_|:||__||:||||:||\n______________UUUUUCG_GUAGC_CC_UC_AC__CGUUU_UGAU__UGUGUCGUUA\n_________3'-UU_______G_____A__C__U__C______C____G___________AGCAA...GCA-5'\n_____________|______________________________________________|\n_____________104____________________________________________59\n |
254 -- 260 |
60 -- 66 |
-39.4084 kcal/mol |
12.9673 kcal/mol |
16.1071 kcal/mol |
215 261@LB@ | |@LB@5'-GUG...GUCGC G C C CU A AA AAGUU...UUU-3'@LB@ GAAGAGC UAUCG GG AG UG GCAAG AUUA ACGCAGCGAU@LB@ :||:||| :|||| || || || ||||: |:|| ||:||||:||@LB@ UUUUUCG GUAGC CC UC AC CGUUU UGAU UGUGUCGUUA@LB@ 3'-UU G A C U C C G AGCAA...GCA-5'@LB@ | |@LB@ 104 59@LB@@LB@@LB@Energy -10.34 kcal/mol@LB@Hybridization Energy -39.4084 kcal/mol@LB@Unfolding Energy - mRNA 12.9673 kcal/mol@LB@Unfolding Energy - sRNA 16.1071 kcal/mol@LB@@LB@Position - mRNA 216 -- 260@LB@Position - sRNA 60 -- 103@LB@Position Seed - mRNA 254 -- 260@LB@Position Seed - sRNA 60 -- 66@LB@ |
75 |
0.003119 |
0.1452 |
b0871 |
poxB |
-11.12 |
0.154817 |
181 -- 203 |
32 -- 50 |
pyruvate dehydrogenase thiamine triphosphate-binding FAD-binding |
|
_____________180_____________________204\n_____________|_______________________|\n5'-CCG...UAUCA________AGAU___GAA_____AAACA...GUG-3'\n______________CAUUCAGG____GGA___CCAUG\n______________||:|||||____|||___|||||\n______________GUGAGUCC____CCU___GGUAC\n3'-UUU...ACAAA_______________AAA_____GAAUA...GCA-5'\n_____________|_______________________|\n_____________51______________________31\n |
182 -- 188 |
43 -- 49 |
-21.2585 kcal/mol |
5.84423 kcal/mol |
4.29868 kcal/mol |
180 204@LB@ | |@LB@5'-CCG...UAUCA AGAU GAA AAACA...GUG-3'@LB@ CAUUCAGG GGA CCAUG@LB@ ||:||||| ||| |||||@LB@ GUGAGUCC CCU GGUAC@LB@3'-UUU...ACAAA AAA GAAUA...GCA-5'@LB@ | |@LB@ 51 31@LB@@LB@@LB@Energy -11.12 kcal/mol@LB@Hybridization Energy -21.2585 kcal/mol@LB@Unfolding Energy - mRNA 5.84423 kcal/mol@LB@Unfolding Energy - sRNA 4.29868 kcal/mol@LB@@LB@Position - mRNA 181 -- 203@LB@Position - sRNA 32 -- 50@LB@Position Seed - mRNA 182 -- 188@LB@Position Seed - sRNA 43 -- 49@LB@ |
64 |
0.002655 |
0.1417 |
b0876 |
ybjD |
-10.33 |
0.215429 |
171 -- 200 |
39 -- 78 |
putative OLD family ATP-dependent endonuclease; DUF2813 family protein |
|
_____________170________________________________________201\n_____________|__________________________________________|\n5'-CGU...GCGUA______AAGU_____________________UGG________AUGAU...GGG-3'\n______________AAGGAU____CACAUA___________UUUC____AGGGGAU\n______________||:||:____||||:|___________||||____|||||||\n______________UUUCUG____GUGUGU___________AAAG____UCCCCUA\n3'-UUU...ACCCG______AU________CGUUAAGCAAC____UGAG_______AAGGU...GCA-5'\n_____________|__________________________________________|\n_____________79_________________________________________38\n |
194 -- 200 |
39 -- 45 |
-20.0974 kcal/mol |
4.99339 kcal/mol |
4.77966 kcal/mol |
170 201@LB@ | |@LB@5'-CGU...GCGUA AAGU UGG AUGAU...GGG-3'@LB@ AAGGAU CACAUA UUUC AGGGGAU@LB@ ||:||: ||||:| |||| |||||||@LB@ UUUCUG GUGUGU AAAG UCCCCUA@LB@3'-UUU...ACCCG AU CGUUAAGCAAC UGAG AAGGU...GCA-5'@LB@ | |@LB@ 79 38@LB@@LB@@LB@Energy -10.33 kcal/mol@LB@Hybridization Energy -20.0974 kcal/mol@LB@Unfolding Energy - mRNA 4.99339 kcal/mol@LB@Unfolding Energy - sRNA 4.77966 kcal/mol@LB@@LB@Position - mRNA 171 -- 200@LB@Position - sRNA 39 -- 78@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 39 -- 45@LB@ |
60 |
0.002324 |
0.1363 |
b0881 |
clpS |
-11.74 |
0.117068 |
9 -- 15 |
40 -- 46 |
regulatory protein for ClpA substrate specificity |
|
_____________8_______16\n_____________|_______|\n___5'-GCAUUUGA_______CAAGG...UCA-3'\n______________CAGGGGA\n______________|||||||\n______________GUCCCCU\n3'-UUU...AGUGA_______AAAGG...GCA-5'\n_____________|_______|\n_____________47______39\n |
9 -- 15 |
40 -- 46 |
-13.2936 kcal/mol |
0.199257 kcal/mol |
1.35582 kcal/mol |
8 16@LB@ | |@LB@ 5'-GCAUUUGA CAAGG...UCA-3'@LB@ CAGGGGA@LB@ |||||||@LB@ GUCCCCU@LB@3'-UUU...AGUGA AAAGG...GCA-5'@LB@ | |@LB@ 47 39@LB@@LB@@LB@Energy -11.74 kcal/mol@LB@Hybridization Energy -13.2936 kcal/mol@LB@Unfolding Energy - mRNA 0.199257 kcal/mol@LB@Unfolding Energy - sRNA 1.35582 kcal/mol@LB@@LB@Position - mRNA 9 -- 15@LB@Position - sRNA 40 -- 46@LB@Position Seed - mRNA 9 -- 15@LB@Position Seed - sRNA 40 -- 46@LB@ |
113 |
0.004991 |
0.1545 |
b0888 |
trxB |
-9.59 |
0.285839 |
209 -- 223 |
61 -- 75 |
thioredoxin reductase FAD/NAD(P)-binding |
|
_____________208_____________224\n_____________|_______________|\n5'-AAC...GGCAC___CAA_________ACUGC...UGC-3'\n______________GAC___ACACAGUAA\n______________|||___||||||:||\n______________CUG___UGUGUCGUU\n3'-UUU...CGUUU___AUG_________AAGCA...GCA-5'\n_____________|_______________|\n_____________76______________60\n |
217 -- 223 |
61 -- 67 |
-15.4977 kcal/mol |
2.65453 kcal/mol |
3.25399 kcal/mol |
208 224@LB@ | |@LB@5'-AAC...GGCAC CAA ACUGC...UGC-3'@LB@ GAC ACACAGUAA@LB@ ||| ||||||:||@LB@ CUG UGUGUCGUU@LB@3'-UUU...CGUUU AUG AAGCA...GCA-5'@LB@ | |@LB@ 76 60@LB@@LB@@LB@Energy -9.59 kcal/mol@LB@Hybridization Energy -15.4977 kcal/mol@LB@Unfolding Energy - mRNA 2.65453 kcal/mol@LB@Unfolding Energy - sRNA 3.25399 kcal/mol@LB@@LB@Position - mRNA 209 -- 223@LB@Position - sRNA 61 -- 75@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 61 -- 67@LB@ |
139 |
0.006425 |
0.1605 |
b0924 |
mukB |
-11.72 |
0.118276 |
203 -- 227 |
45 -- 75 |
chromosome condensin MukBEF ATPase and DNA-binding subunit |
|
_____________202_____________________________228\n_____________|_______________________________|\n5'-UGG...AUAAU_____A_________A_______________CUGAC...CUG-3'\n______________GAUUG_ACGCGGUAA_______UUUCGCUCA\n______________||:|:_||:|:|:||_______||||:||||\n______________CUGAU_UGUGUCGUU_______AAAGUGAGU\n3'-UUU...CGUUU_____G_________AAGCAAC_________CCCCU...GCA-5'\n_____________|_______________________________|\n_____________76______________________________44\n |
221 -- 227 |
45 -- 51 |
-22.3255 kcal/mol |
6.8688 kcal/mol |
3.74078 kcal/mol |
202 228@LB@ | |@LB@5'-UGG...AUAAU A A CUGAC...CUG-3'@LB@ GAUUG ACGCGGUAA UUUCGCUCA@LB@ ||:|: ||:|:|:|| ||||:||||@LB@ CUGAU UGUGUCGUU AAAGUGAGU@LB@3'-UUU...CGUUU G AAGCAAC CCCCU...GCA-5'@LB@ | |@LB@ 76 44@LB@@LB@@LB@Energy -11.72 kcal/mol@LB@Hybridization Energy -22.3255 kcal/mol@LB@Unfolding Energy - mRNA 6.8688 kcal/mol@LB@Unfolding Energy - sRNA 3.74078 kcal/mol@LB@@LB@Position - mRNA 203 -- 227@LB@Position - sRNA 45 -- 75@LB@Position Seed - mRNA 221 -- 227@LB@Position Seed - sRNA 45 -- 51@LB@ |
189 |
0.009605 |
0.1776 |
b0927 |
ycbL |
-15.21 |
0.018444 |
14 -- 51 |
33 -- 78 |
putative metal-binding enzyme |
|
_____________13__________________________________________________52\n_____________|___________________________________________________|\n5'-GGA...GAAGA________U_____UAAAG__________________CGAU__________AUUGA...GCG-3'\n______________AAAG_CUA_CACAC________________GC_CAGG____GGAUUUCCAU\n______________||||_|||_|||||________________:|_||||____||||||||||\n______________UUUC_GAU_GUGUG________________UG_GUCC____CCUAAAGGUA\n3'-UUU...ACCCG____U_________UCGUUAAGCAACAAAG__A__________________CGAAU...GCA-5'\n_____________|___________________________________________________|\n_____________79__________________________________________________32\n |
45 -- 51 |
33 -- 39 |
-26.8189 kcal/mol |
6.79395 kcal/mol |
4.81602 kcal/mol |
13 52@LB@ | |@LB@5'-GGA...GAAGA U UAAAG CGAU AUUGA...GCG-3'@LB@ AAAG CUA CACAC GC CAGG GGAUUUCCAU@LB@ |||| ||| ||||| :| |||| ||||||||||@LB@ UUUC GAU GUGUG UG GUCC CCUAAAGGUA@LB@3'-UUU...ACCCG U UCGUUAAGCAACAAAG A CGAAU...GCA-5'@LB@ | |@LB@ 79 32@LB@@LB@@LB@Energy -15.21 kcal/mol@LB@Hybridization Energy -26.8189 kcal/mol@LB@Unfolding Energy - mRNA 6.79395 kcal/mol@LB@Unfolding Energy - sRNA 4.81602 kcal/mol@LB@@LB@Position - mRNA 14 -- 51@LB@Position - sRNA 33 -- 78@LB@Position Seed - mRNA 45 -- 51@LB@Position Seed - sRNA 33 -- 39@LB@ |
91 |
0.00412 |
0.1538 |
b0931 |
pncB |
-13.41 |
0.051237 |
255 -- 284 |
48 -- 77 |
nicotinate phosphoribosyltransferase |
|
_____________254______________________________285\n_____________|________________________________|\n5'-AUG...CUUAU__________AU_______GC___________CACUA...UGC-3'\n______________AAG_UUGCAU__GCAGCAA__CG_UGUUUCAU\n______________|||_:|:||:__:||||||__||_|||||||:\n______________UUC_GAUGUG__UGUCGUU__GC_ACAAAGUG\n3'-UUU...CCCGU___U_______________AA__A________AGUCC...GCA-5'\n_____________|________________________________|\n_____________78_______________________________47\n |
278 -- 284 |
48 -- 54 |
-26.8209 kcal/mol |
9.72536 kcal/mol |
3.68729 kcal/mol |
254 285@LB@ | |@LB@5'-AUG...CUUAU AU GC CACUA...UGC-3'@LB@ AAG UUGCAU GCAGCAA CG UGUUUCAU@LB@ ||| :|:||: :|||||| || |||||||:@LB@ UUC GAUGUG UGUCGUU GC ACAAAGUG@LB@3'-UUU...CCCGU U AA A AGUCC...GCA-5'@LB@ | |@LB@ 78 47@LB@@LB@@LB@Energy -13.41 kcal/mol@LB@Hybridization Energy -26.8209 kcal/mol@LB@Unfolding Energy - mRNA 9.72536 kcal/mol@LB@Unfolding Energy - sRNA 3.68729 kcal/mol@LB@@LB@Position - mRNA 255 -- 284@LB@Position - sRNA 48 -- 77@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 48 -- 54@LB@ |
177 |
0.008834 |
0.1747 |
b0932 |
pepN |
-9.31 |
0.316043 |
123 -- 145 |
58 -- 78 |
aminopeptidase N |
|
_____________122_____________________146\n_____________|_______________________|\n5'-GUA...AAGAU_____UU_______GC_______ACGCA...AGA-3'\n______________GAAGA__CUGCAUA__GCGAUUU\n______________:||||__||:||:|__||:|||:\n______________UUUCU__GAUGUGU__CGUUAAG\n3'-UUU...ACCCG______________GU_______CAACA...GCA-5'\n_____________|_______________________|\n_____________79______________________57\n |
139 -- 145 |
58 -- 64 |
-18.0038 kcal/mol |
5.38317 kcal/mol |
3.31018 kcal/mol |
122 146@LB@ | |@LB@5'-GUA...AAGAU UU GC ACGCA...AGA-3'@LB@ GAAGA CUGCAUA GCGAUUU@LB@ :|||| ||:||:| ||:|||:@LB@ UUUCU GAUGUGU CGUUAAG@LB@3'-UUU...ACCCG GU CAACA...GCA-5'@LB@ | |@LB@ 79 57@LB@@LB@@LB@Energy -9.31 kcal/mol@LB@Hybridization Energy -18.0038 kcal/mol@LB@Unfolding Energy - mRNA 5.38317 kcal/mol@LB@Unfolding Energy - sRNA 3.31018 kcal/mol@LB@@LB@Position - mRNA 123 -- 145@LB@Position - sRNA 58 -- 78@LB@Position Seed - mRNA 139 -- 145@LB@Position Seed - sRNA 58 -- 64@LB@ |
149 |
0.006962 |
0.1638 |
b0935 |
ssuD |
-8.45 |
0.421381 |
102 -- 123 |
48 -- 71 |
alkanesulfonate monooxygenase FMNH(2)-dependent |
|
_____________101______________________124\n_____________|________________________|\n5'-AAA...CAGCA___A_______A____________GAAAA...AAC-3'\n______________GCA_ACGGCAG_UC__UGUUUUAU\n______________:||_||:|||:_||__|||||:|:\n______________UGU_UGUCGUU_AG__ACAAAGUG\n3'-UUU...UCUGA___G_______A__CA________AGUCC...GCA-5'\n_____________|________________________|\n_____________72_______________________47\n |
117 -- 123 |
48 -- 54 |
-17.2917 kcal/mol |
5.19453 kcal/mol |
3.65243 kcal/mol |
101 124@LB@ | |@LB@5'-AAA...CAGCA A A GAAAA...AAC-3'@LB@ GCA ACGGCAG UC UGUUUUAU@LB@ :|| ||:|||: || |||||:|:@LB@ UGU UGUCGUU AG ACAAAGUG@LB@3'-UUU...UCUGA G A CA AGUCC...GCA-5'@LB@ | |@LB@ 72 47@LB@@LB@@LB@Energy -8.45 kcal/mol@LB@Hybridization Energy -17.2917 kcal/mol@LB@Unfolding Energy - mRNA 5.19453 kcal/mol@LB@Unfolding Energy - sRNA 3.65243 kcal/mol@LB@@LB@Position - mRNA 102 -- 123@LB@Position - sRNA 48 -- 71@LB@Position Seed - mRNA 117 -- 123@LB@Position Seed - sRNA 48 -- 54@LB@ |