135 |
0.006184 |
0.1605 |
b0637 |
rsfS |
-13.92 |
0.038847 |
179 -- 195 |
40 -- 56 |
ribosomal silencing factor |
|
_____________178_______________196\n_____________|_________________|\n5'-AUU...UCUAU___A_____C_______AAAAC...UCA-3'\n______________UUG_UUCAC_CAGGGGG\n______________|||_|||||_||||||:\n______________AAC_AAGUG_GUCCCCU\n3'-UUU...UAAGC___A_____A_______AAAGG...GCA-5'\n_____________|_________________|\n_____________57________________39\n |
189 -- 195 |
40 -- 46 |
-20.5369 kcal/mol |
4.69018 kcal/mol |
1.92548 kcal/mol |
178 196@LB@ | |@LB@5'-AUU...UCUAU A C AAAAC...UCA-3'@LB@ UUG UUCAC CAGGGGG@LB@ ||| ||||| ||||||:@LB@ AAC AAGUG GUCCCCU@LB@3'-UUU...UAAGC A A AAAGG...GCA-5'@LB@ | |@LB@ 57 39@LB@@LB@@LB@Energy -13.92 kcal/mol@LB@Hybridization Energy -20.5369 kcal/mol@LB@Unfolding Energy - mRNA 4.69018 kcal/mol@LB@Unfolding Energy - sRNA 1.92548 kcal/mol@LB@@LB@Position - mRNA 179 -- 195@LB@Position - sRNA 40 -- 56@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 40 -- 46@LB@ |
49 |
0.00161 |
0.1153 |
b0655 |
gltI |
-14.54 |
0.027470 |
112 -- 169 |
31 -- 74 |
glutamate/aspartate periplasmic binding protein |
|
_____________111________________________________________________________170\n_____________|__________________________________________________________|\n5'-AUU...ACAAC_______AAUAAAGUU____A____AACAACACAAA______CAAC____A_______GUUCU...UGG-3'\n______________ACUGCAC_________GCAG_CGAU___________CACUCA____GGGU_UCCAUGC\n______________|||:|||_________:|||_|:||___________||||||____||:|_|||||||\n______________UGAUGUG_________UGUC_GUUA___________GUGAGU____CCUA_AGGUACG\n3'-UUU...GUUUC_________________________AGCAACAAA________CC______A_______AAUAU...GCA-5'\n_____________|__________________________________________________________|\n_____________75_________________________________________________________30\n |
163 -- 169 |
31 -- 37 |
-33.5884 kcal/mol |
11.7902 kcal/mol |
7.26183 kcal/mol |
111 170@LB@ | |@LB@5'-AUU...ACAAC AAUAAAGUU A AACAACACAAA CAAC A GUUCU...UGG-3'@LB@ ACUGCAC GCAG CGAU CACUCA GGGU UCCAUGC@LB@ |||:||| :||| |:|| |||||| ||:| |||||||@LB@ UGAUGUG UGUC GUUA GUGAGU CCUA AGGUACG@LB@3'-UUU...GUUUC AGCAACAAA CC A AAUAU...GCA-5'@LB@ | |@LB@ 75 30@LB@@LB@@LB@Energy -14.54 kcal/mol@LB@Hybridization Energy -33.5884 kcal/mol@LB@Unfolding Energy - mRNA 11.7902 kcal/mol@LB@Unfolding Energy - sRNA 7.26183 kcal/mol@LB@@LB@Position - mRNA 112 -- 169@LB@Position - sRNA 31 -- 74@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 31 -- 37@LB@ |
175 |
0.008768 |
0.1747 |
b0658 |
ybeX |
-12.37 |
0.086971 |
210 -- 256 |
35 -- 75 |
putative ion transport |
|
_____________209_____________________________________________257\n_____________|_______________________________________________|\n5'-UUA...GCGAC___AAUU___________GACACGAUAAG__ACA__AA_________CUCCC...ACC-3'\n______________GAC____CACACAGUAGU___________CA___AG__GGGAUUUUU\n______________|||____|||||||:|:|___________||___||__|||||||::\n______________CUG____GUGUGUCGUUA___________GU___UC__CCCUAAAGG\n3'-UUU...CGUUU___AU_____________AGCAACAAA____GAG_____________UACGA...GCA-5'\n_____________|_______________________________________________|\n_____________76______________________________________________34\n |
249 -- 255 |
36 -- 42 |
-26.9454 kcal/mol |
9.77444 kcal/mol |
4.80541 kcal/mol |
209 257@LB@ | |@LB@5'-UUA...GCGAC AAUU GACACGAUAAG ACA AA CUCCC...ACC-3'@LB@ GAC CACACAGUAGU CA AG GGGAUUUUU@LB@ ||| |||||||:|:| || || |||||||::@LB@ CUG GUGUGUCGUUA GU UC CCCUAAAGG@LB@3'-UUU...CGUUU AU AGCAACAAA GAG UACGA...GCA-5'@LB@ | |@LB@ 76 34@LB@@LB@@LB@Energy -12.37 kcal/mol@LB@Hybridization Energy -26.9454 kcal/mol@LB@Unfolding Energy - mRNA 9.77444 kcal/mol@LB@Unfolding Energy - sRNA 4.80541 kcal/mol@LB@@LB@Position - mRNA 210 -- 256@LB@Position - sRNA 35 -- 75@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 36 -- 42@LB@ |
1 |
5.015e-10 |
1.765e-06 |
b0680 |
glnS |
-23.71 |
0.000006 |
155 -- 198 |
34 -- 77 |
glutamyl-tRNA synthetase |
|
_____________154___________________________________________199\n_____________|_____________________________________________|\n5'-UGC...CUUAU_____C______C__U__A________A_____U_A___A_____CGAUG...CGC-3'\n______________AAGAU_AUACGC_GU_AU_CGUUGUUU_CGCUU_G_GGA__UCCA\n______________||||:_|:||:|_|:_||_||||||||_|:||:_|_|||__||||\n______________UUCUG_UGUGUG_CG_UA_GCAACAAA_GUGAG_C_CCU__AGGU\n3'-UUU...CCCGU_____A______U__U__A______________U_C___AA____ACGAA...GCA-5'\n_____________|_____________________________________________|\n_____________78____________________________________________33\n |
175 -- 181 |
51 -- 57 |
-34.8912 kcal/mol |
6.37021 kcal/mol |
4.81601 kcal/mol |
154 199@LB@ | |@LB@5'-UGC...CUUAU C C U A A U A A CGAUG...CGC-3'@LB@ AAGAU AUACGC GU AU CGUUGUUU CGCUU G GGA UCCA@LB@ ||||: |:||:| |: || |||||||| |:||: | ||| ||||@LB@ UUCUG UGUGUG CG UA GCAACAAA GUGAG C CCU AGGU@LB@3'-UUU...CCCGU A U U A U C AA ACGAA...GCA-5'@LB@ | |@LB@ 78 33@LB@@LB@@LB@Energy -23.71 kcal/mol@LB@Hybridization Energy -34.8912 kcal/mol@LB@Unfolding Energy - mRNA 6.37021 kcal/mol@LB@Unfolding Energy - sRNA 4.81601 kcal/mol@LB@@LB@Position - mRNA 155 -- 198@LB@Position - sRNA 34 -- 77@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 51 -- 57@LB@ |
129 |
0.005822 |
0.1577 |
b0713 |
ybgL |
-14.99 |
0.021088 |
226 -- 247 |
61 -- 83 |
UPF0271 family protein |
|
_____________225_____________________248\n_____________|_______________________|\n5'-GCC...CGAUC_______________________CGCAG...AUG-3'\n______________UGGGCGAAGGCUGCGC_CAGCGA\n______________|||||:|||:||:|:|_||||:|\n______________ACCCGUUUCUGAUGUG_GUCGUU\n3'-UUU...CCUCU________________U______AAGCA...GCA-5'\n_____________|_______________________|\n_____________84______________________60\n |
234 -- 240 |
69 -- 75 |
-36.9571 kcal/mol |
11.7384 kcal/mol |
10.2322 kcal/mol |
225 248@LB@ | |@LB@5'-GCC...CGAUC CGCAG...AUG-3'@LB@ UGGGCGAAGGCUGCGC CAGCGA@LB@ |||||:|||:||:|:| ||||:|@LB@ ACCCGUUUCUGAUGUG GUCGUU@LB@3'-UUU...CCUCU U AAGCA...GCA-5'@LB@ | |@LB@ 84 60@LB@@LB@@LB@Energy -14.99 kcal/mol@LB@Hybridization Energy -36.9571 kcal/mol@LB@Unfolding Energy - mRNA 11.7384 kcal/mol@LB@Unfolding Energy - sRNA 10.2322 kcal/mol@LB@@LB@Position - mRNA 226 -- 247@LB@Position - sRNA 61 -- 83@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 69 -- 75@LB@ |
15 |
0.0001044 |
0.0245 |
b0741 |
pal |
-16.61 |
0.007509 |
30 -- 75 |
30 -- 71 |
peptidoglycan-associated outer membrane lipoprotein |
|
_____________29_____________________________________________76\n_____________|______________________________________________|\n5'-GGA...UAACG____U________CUACAGCUCUU__________GGGA________GAAUU...GCG-3'\n______________GCAC_AUGGUAAU___________CUCAGGGGAU____UCCGUGCU\n______________:|||_|::|:|||___________||||||||||____|||:||||\n______________UGUG_UGUCGUUA___________GAGUCCCCUA____AGGUACGA\n3'-UUU...UCUGA_____________AGCAACAAAGU__________A___________AUAUU...GCA-5'\n_____________|______________________________________________|\n_____________72_____________________________________________29\n |
69 -- 75 |
30 -- 36 |
-38.4662 kcal/mol |
13.7923 kcal/mol |
8.066 kcal/mol |
29 76@LB@ | |@LB@5'-GGA...UAACG U CUACAGCUCUU GGGA GAAUU...GCG-3'@LB@ GCAC AUGGUAAU CUCAGGGGAU UCCGUGCU@LB@ :||| |::|:||| |||||||||| |||:||||@LB@ UGUG UGUCGUUA GAGUCCCCUA AGGUACGA@LB@3'-UUU...UCUGA AGCAACAAAGU A AUAUU...GCA-5'@LB@ | |@LB@ 72 29@LB@@LB@@LB@Energy -16.61 kcal/mol@LB@Hybridization Energy -38.4662 kcal/mol@LB@Unfolding Energy - mRNA 13.7923 kcal/mol@LB@Unfolding Energy - sRNA 8.066 kcal/mol@LB@@LB@Position - mRNA 30 -- 75@LB@Position - sRNA 30 -- 71@LB@Position Seed - mRNA 69 -- 75@LB@Position Seed - sRNA 30 -- 36@LB@ |
193 |
0.0098 |
0.1776 |
b0757 |
galK |
-12.45 |
0.083592 |
134 -- 176 |
33 -- 76 |
galactokinase |
|
_____________133____________________________________________177\n_____________|______________________________________________|\n5'-CAU...ACCGC________G_______AG__U___CGCG__G____C____A_____UUUCG...GUG-3'\n______________AGA__ACA_GCAGCAG__CG_UUG____CA_UCAG__GAU_UCCAU\n______________|||__|||_:|||||:__||_|||____||_||||__|||_|||||\n______________UCU__UGU_UGUCGUU__GC_AAC____GU_AGUC__CUA_AGGUA\n3'-UUU...CCGUU___GA___G_______AA______AAA___G____CC___A_____CGAAU...GCA-5'\n_____________|______________________________________________|\n_____________77_____________________________________________32\n |
141 -- 147 |
61 -- 67 |
-31.8657 kcal/mol |
14.6029 kcal/mol |
4.81602 kcal/mol |
133 177@LB@ | |@LB@5'-CAU...ACCGC G AG U CGCG G C A UUUCG...GUG-3'@LB@ AGA ACA GCAGCAG CG UUG CA UCAG GAU UCCAU@LB@ ||| ||| :|||||: || ||| || |||| ||| |||||@LB@ UCU UGU UGUCGUU GC AAC GU AGUC CUA AGGUA@LB@3'-UUU...CCGUU GA G AA AAA G CC A CGAAU...GCA-5'@LB@ | |@LB@ 77 32@LB@@LB@@LB@Energy -12.45 kcal/mol@LB@Hybridization Energy -31.8657 kcal/mol@LB@Unfolding Energy - mRNA 14.6029 kcal/mol@LB@Unfolding Energy - sRNA 4.81602 kcal/mol@LB@@LB@Position - mRNA 134 -- 176@LB@Position - sRNA 33 -- 76@LB@Position Seed - mRNA 141 -- 147@LB@Position Seed - sRNA 61 -- 67@LB@ |
86 |
0.003687 |
0.1509 |
b0774 |
bioA |
-10.95 |
0.166636 |
92 -- 152 |
44 -- 98 |
7 8-diaminopelargonic acid synthase PLP-dependent |
|
_____________91_____________________________________________________________153\n_____________|______________________________________________________________|\n5'-ACG...ACAAU_____G______C____A__CAU______UCUCCAAA___U__UU_________A_______UGUAG...AAG-3'\n______________GUCCA_CGUGGG_GGUG_GC___GGGGCU________ACG_GU__UUUGUUGUU__AUUCGG\n______________|:|||_||||||_|:||_||___::|:||________||:_|:__||:||||||__|:||:|\n______________CGGGU_GCACCC_CUAC_CG___UUCUGA________UGU_CG__AAGCAACAA__UGAGUC\n____3'-UUUUUUU_____A______U____C__U________UGUG__________UU_________AG______CCCUA...GCA-5'\n_____________|______________________________________________________________|\n_____________99_____________________________________________________________43\n |
139 -- 145 |
52 -- 58 |
-48.0349 kcal/mol |
20.1482 kcal/mol |
16.9429 kcal/mol |
91 153@LB@ | |@LB@5'-ACG...ACAAU G C A CAU UCUCCAAA U UU A UGUAG...AAG-3'@LB@ GUCCA CGUGGG GGUG GC GGGGCU ACG GU UUUGUUGUU AUUCGG@LB@ |:||| |||||| |:|| || ::|:|| ||: |: ||:|||||| |:||:|@LB@ CGGGU GCACCC CUAC CG UUCUGA UGU CG AAGCAACAA UGAGUC@LB@ 3'-UUUUUUU A U C U UGUG UU AG CCCUA...GCA-5'@LB@ | |@LB@ 99 43@LB@@LB@@LB@Energy -10.95 kcal/mol@LB@Hybridization Energy -48.0349 kcal/mol@LB@Unfolding Energy - mRNA 20.1482 kcal/mol@LB@Unfolding Energy - sRNA 16.9429 kcal/mol@LB@@LB@Position - mRNA 92 -- 152@LB@Position - sRNA 44 -- 98@LB@Position Seed - mRNA 139 -- 145@LB@Position Seed - sRNA 52 -- 58@LB@ |
85 |
0.003677 |
0.1509 |
b0813 |
rhtA |
-9.71 |
0.273689 |
106 -- 123 |
34 -- 46 |
threonine and homoserine efflux system |
|
_____________105________________124\n_____________|__________________|\n5'-CAG...CAAAA_______AAAUU______ACAAA...CAC-3'\n______________CGGGGGA_____UUUUCA\n______________|:|||||_____|||:||\n______________GUCCCCU_____AAAGGU\n3'-UUU...AGUGA__________________ACGAA...GCA-5'\n_____________|__________________|\n_____________47_________________33\n |
106 -- 112 |
40 -- 46 |
-14.6812 kcal/mol |
3.4305 kcal/mol |
1.54427 kcal/mol |
105 124@LB@ | |@LB@5'-CAG...CAAAA AAAUU ACAAA...CAC-3'@LB@ CGGGGGA UUUUCA@LB@ |:||||| |||:||@LB@ GUCCCCU AAAGGU@LB@3'-UUU...AGUGA ACGAA...GCA-5'@LB@ | |@LB@ 47 33@LB@@LB@@LB@Energy -9.71 kcal/mol@LB@Hybridization Energy -14.6812 kcal/mol@LB@Unfolding Energy - mRNA 3.4305 kcal/mol@LB@Unfolding Energy - sRNA 1.54427 kcal/mol@LB@@LB@Position - mRNA 106 -- 123@LB@Position - sRNA 34 -- 46@LB@Position Seed - mRNA 106 -- 112@LB@Position Seed - sRNA 40 -- 46@LB@ |
84 |
0.003656 |
0.1509 |
b0827 |
moeA |
-7.84 |
0.503176 |
157 -- 203 |
32 -- 75 |
molybdopterin molybdenumtransferase; molybdopterin biosynthesis protein |
|
_____________156_______________________________________________204\n_____________|_________________________________________________|\n5'-AUU...UUUCU_______AUA___A______AUU___CC____G____A_U_________GAAUU...UAC-3'\n______________GAC_AUA___GGC_AAUUCG___UUG__UC_C_CAGG_G_GUUUUCAUG\n______________|||_|:|___:||_||||||___|||__||_|_||||_|_:|||:||||\n______________CUG_UGU___UCG_UUAAGC___AAC__AG_G_GUCC_C_UAAAGGUAC\n3'-UUU...CGUUU___A___GUG________________AA__U_A______C_________GAAUA...GCA-5'\n_____________|_________________________________________________|\n_____________76________________________________________________31\n |
197 -- 203 |
32 -- 38 |
-28.9008 kcal/mol |
13.8106 kcal/mol |
7.24967 kcal/mol |
156 204@LB@ | |@LB@5'-AUU...UUUCU AUA A AUU CC G A U GAAUU...UAC-3'@LB@ GAC AUA GGC AAUUCG UUG UC C CAGG G GUUUUCAUG@LB@ ||| |:| :|| |||||| ||| || | |||| | :|||:||||@LB@ CUG UGU UCG UUAAGC AAC AG G GUCC C UAAAGGUAC@LB@3'-UUU...CGUUU A GUG AA U A C GAAUA...GCA-5'@LB@ | |@LB@ 76 31@LB@@LB@@LB@Energy -7.84 kcal/mol@LB@Hybridization Energy -28.9008 kcal/mol@LB@Unfolding Energy - mRNA 13.8106 kcal/mol@LB@Unfolding Energy - sRNA 7.24967 kcal/mol@LB@@LB@Position - mRNA 157 -- 203@LB@Position - sRNA 32 -- 75@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 32 -- 38@LB@ |