196 |
0.01003 |
0.1776 |
b0344 |
lacZ |
-8.86 |
0.369200 |
215 -- 237 |
48 -- 76 |
beta-D-galactosidase |
|
_____________214___________________________238\n_____________|_____________________________|\n5'-ACC...AUUAC_____________________C_______AACGU...CUU-3'\n______________GGAUU_CAC_UGGC____CGU_GUUUUAC\n______________:||:|_|||_::||____|||_||||:||\n______________UCUGA_GUG_GUCG____GCA_CAAAGUG\n3'-UUU...CCGUU_____U___U____UUAA___A_______AGUCC...GCA-5'\n_____________|_____________________________|\n_____________77____________________________47\n |
231 -- 237 |
48 -- 54 |
-17.9156 kcal/mol |
5.37156 kcal/mol |
3.68714 kcal/mol |
214 238@LB@ | |@LB@5'-ACC...AUUAC C AACGU...CUU-3'@LB@ GGAUU CAC UGGC CGU GUUUUAC@LB@ :||:| ||| ::|| ||| ||||:||@LB@ UCUGA GUG GUCG GCA CAAAGUG@LB@3'-UUU...CCGUU U U UUAA A AGUCC...GCA-5'@LB@ | |@LB@ 77 47@LB@@LB@@LB@Energy -8.86 kcal/mol@LB@Hybridization Energy -17.9156 kcal/mol@LB@Unfolding Energy - mRNA 5.37156 kcal/mol@LB@Unfolding Energy - sRNA 3.68714 kcal/mol@LB@@LB@Position - mRNA 215 -- 237@LB@Position - sRNA 48 -- 76@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 48 -- 54@LB@ |
43 |
0.00107 |
0.08759 |
b4036 |
lamB |
-10.48 |
0.202041 |
185 -- 197 |
39 -- 51 |
maltose outer membrane porin (maltoporin) |
|
_____________184___________198\n_____________|_____________|\n5'-CGC...AGCAA_G_______A___AGAAU...GUU-3'\n______________U_ACUCAGG_GAU\n______________|_|||||||_|||\n______________A_UGAGUCC_CUA\n3'-UUU...AACAA_G_______C___AAGGU...GCA-5'\n_____________|_____________|\n_____________52____________38\n |
187 -- 193 |
43 -- 49 |
-14.6452 kcal/mol |
2.36402 kcal/mol |
1.79807 kcal/mol |
184 198@LB@ | |@LB@5'-CGC...AGCAA G A AGAAU...GUU-3'@LB@ U ACUCAGG GAU@LB@ | ||||||| |||@LB@ A UGAGUCC CUA@LB@3'-UUU...AACAA G C AAGGU...GCA-5'@LB@ | |@LB@ 52 38@LB@@LB@@LB@Energy -10.48 kcal/mol@LB@Hybridization Energy -14.6452 kcal/mol@LB@Unfolding Energy - mRNA 2.36402 kcal/mol@LB@Unfolding Energy - sRNA 1.79807 kcal/mol@LB@@LB@Position - mRNA 185 -- 197@LB@Position - sRNA 39 -- 51@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 43 -- 49@LB@ |
94 |
0.004209 |
0.1538 |
b1798 |
leuE |
-8.23 |
0.450453 |
21 -- 61 |
47 -- 73 |
leucine efflux protein |
|
_____________20_________________________________________62\n_____________|__________________________________________|\n5'-UGC...AAUUU____________U____CC_AGCACUACCCGAAUU_______GGAGC...AAA-3'\n______________UUACGC_CAGUA_UUUG__G_______________UUUCACU\n______________:|||:|_|||:|_||:|__|_______________|||||||\n______________GAUGUG_GUCGU_AAGC__C_______________AAAGUGA\n3'-UUU...UUUCU______U_____U____AA_______________________GUCCC...GCA-5'\n_____________|__________________________________________|\n_____________74_________________________________________46\n |
55 -- 61 |
47 -- 53 |
-16.3548 kcal/mol |
4.43937 kcal/mol |
3.69006 kcal/mol |
20 62@LB@ | |@LB@5'-UGC...AAUUU U CC AGCACUACCCGAAUU GGAGC...AAA-3'@LB@ UUACGC CAGUA UUUG G UUUCACU@LB@ :|||:| |||:| ||:| | |||||||@LB@ GAUGUG GUCGU AAGC C AAAGUGA@LB@3'-UUU...UUUCU U U AA GUCCC...GCA-5'@LB@ | |@LB@ 74 46@LB@@LB@@LB@Energy -8.23 kcal/mol@LB@Hybridization Energy -16.3548 kcal/mol@LB@Unfolding Energy - mRNA 4.43937 kcal/mol@LB@Unfolding Energy - sRNA 3.69006 kcal/mol@LB@@LB@Position - mRNA 21 -- 61@LB@Position - sRNA 47 -- 73@LB@Position Seed - mRNA 55 -- 61@LB@Position Seed - sRNA 47 -- 53@LB@ |
82 |
0.00343 |
0.1462 |
b4043 |
lexA |
-10.80 |
0.176998 |
163 -- 196 |
40 -- 72 |
transcriptional repressor of SOS regulon |
|
_____________162________________________________197\n_____________|__________________________________|\n5'-CGC...GUAUA___U_______UAAC___AUAUA___C_______CGGAA...AGC-3'\n______________UAC_CACAGCA____UGU_____CAC_CAGGGGG\n______________|||_|||||||____:||_____|||_||||||:\n______________AUG_GUGUCGU____GCA_____GUG_GUCCCCU\n3'-UUU...UUCUG___U_______UAA____ACAAA___A_______AAAGG...GCA-5'\n_____________|__________________________________|\n_____________73_________________________________39\n |
190 -- 196 |
40 -- 46 |
-30.123 kcal/mol |
14.5591 kcal/mol |
4.76217 kcal/mol |
162 197@LB@ | |@LB@5'-CGC...GUAUA U UAAC AUAUA C CGGAA...AGC-3'@LB@ UAC CACAGCA UGU CAC CAGGGGG@LB@ ||| ||||||| :|| ||| ||||||:@LB@ AUG GUGUCGU GCA GUG GUCCCCU@LB@3'-UUU...UUCUG U UAA ACAAA A AAAGG...GCA-5'@LB@ | |@LB@ 73 39@LB@@LB@@LB@Energy -10.80 kcal/mol@LB@Hybridization Energy -30.123 kcal/mol@LB@Unfolding Energy - mRNA 14.5591 kcal/mol@LB@Unfolding Energy - sRNA 4.76217 kcal/mol@LB@@LB@Position - mRNA 163 -- 196@LB@Position - sRNA 40 -- 72@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 40 -- 46@LB@ |
188 |
0.009562 |
0.1776 |
b0147 |
ligT |
-10.24 |
0.223023 |
2 -- 33 |
35 -- 66 |
2'-5' RNA ligase |
|
_____________1_________________________________34\n_____________|_________________________________|\n__________5'-C________GCAGCGG___GC____UU_______CGGCC...CGG-3'\n______________CAGCAGUU________CA__CAGG__GAUUUCC\n______________|||||:||________||__||||__|||||||\n______________GUCGUUAA________GU__GUCC__CUAAAGG\n3'-UUU...UGUGU________GCAACAAA__GA____C________UACGA...GCA-5'\n_____________|_________________________________|\n_____________67________________________________34\n |
27 -- 33 |
35 -- 41 |
-25.6384 kcal/mol |
10.64 kcal/mol |
4.7609 kcal/mol |
1 34@LB@ | |@LB@ 5'-C GCAGCGG GC UU CGGCC...CGG-3'@LB@ CAGCAGUU CA CAGG GAUUUCC@LB@ |||||:|| || |||| |||||||@LB@ GUCGUUAA GU GUCC CUAAAGG@LB@3'-UUU...UGUGU GCAACAAA GA C UACGA...GCA-5'@LB@ | |@LB@ 67 34@LB@@LB@@LB@Energy -10.24 kcal/mol@LB@Hybridization Energy -25.6384 kcal/mol@LB@Unfolding Energy - mRNA 10.64 kcal/mol@LB@Unfolding Energy - sRNA 4.7609 kcal/mol@LB@@LB@Position - mRNA 2 -- 33@LB@Position - sRNA 35 -- 66@LB@Position Seed - mRNA 27 -- 33@LB@Position Seed - sRNA 35 -- 41@LB@ |
67 |
0.002719 |
0.1417 |
b3454 |
livF |
-11.67 |
0.120634 |
106 -- 122 |
40 -- 58 |
branched-chain amino acid ABC transporter ATPase |
|
_____________105_________________123\n_____________|___________________|\n5'-AGA...AUUUA___GG_____A________CGCCG...UUG-3'\n______________CGU____UCA_UCAGGGGA\n______________|||____|||_||||||||\n______________GCA____AGU_AGUCCCCU\n3'-UUU...GUUAA___ACAA___G________AAAGG...GCA-5'\n_____________|___________________|\n_____________59__________________39\n |
116 -- 122 |
40 -- 46 |
-19.8465 kcal/mol |
5.75116 kcal/mol |
2.42241 kcal/mol |
105 123@LB@ | |@LB@5'-AGA...AUUUA GG A CGCCG...UUG-3'@LB@ CGU UCA UCAGGGGA@LB@ ||| ||| ||||||||@LB@ GCA AGU AGUCCCCU@LB@3'-UUU...GUUAA ACAA G AAAGG...GCA-5'@LB@ | |@LB@ 59 39@LB@@LB@@LB@Energy -11.67 kcal/mol@LB@Hybridization Energy -19.8465 kcal/mol@LB@Unfolding Energy - mRNA 5.75116 kcal/mol@LB@Unfolding Energy - sRNA 2.42241 kcal/mol@LB@@LB@Position - mRNA 106 -- 122@LB@Position - sRNA 40 -- 58@LB@Position Seed - mRNA 116 -- 122@LB@Position Seed - sRNA 40 -- 46@LB@ |
10 |
6.564e-05 |
0.0231 |
b3458 |
livK |
-17.14 |
0.005196 |
153 -- 196 |
35 -- 71 |
leucine transporter subunit |
|
_____________152____________________________________________197\n_____________|______________________________________________|\n5'-UGU...UGUUA______AAAAACAA_____CACAACA______GAAU__________GACUA...CGA-3'\n______________ACACAU________AGCAA_________UCAC____GGGGAUUUUU\n______________|||||:________|||||_________||||____||||||||::\n______________UGUGUG________UCGUU_________AGUG____CCCCUAAAGG\n3'-UUU...UCUGA___________________AAGCAACAA____AGU___________UACGA...GCA-5'\n_____________|______________________________________________|\n_____________72_____________________________________________34\n |
190 -- 196 |
35 -- 41 |
-26.3585 kcal/mol |
4.43917 kcal/mol |
4.78171 kcal/mol |
152 197@LB@ | |@LB@5'-UGU...UGUUA AAAAACAA CACAACA GAAU GACUA...CGA-3'@LB@ ACACAU AGCAA UCAC GGGGAUUUUU@LB@ |||||: ||||| |||| ||||||||::@LB@ UGUGUG UCGUU AGUG CCCCUAAAGG@LB@3'-UUU...UCUGA AAGCAACAA AGU UACGA...GCA-5'@LB@ | |@LB@ 72 34@LB@@LB@@LB@Energy -17.14 kcal/mol@LB@Hybridization Energy -26.3585 kcal/mol@LB@Unfolding Energy - mRNA 4.43917 kcal/mol@LB@Unfolding Energy - sRNA 4.78171 kcal/mol@LB@@LB@Position - mRNA 153 -- 196@LB@Position - sRNA 35 -- 71@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 35 -- 41@LB@ |
99 |
0.004523 |
0.1538 |
b1516 |
lsrB |
-10.33 |
0.215118 |
8 -- 28 |
39 -- 59 |
autoinducer 2-binding protein |
|
_____________7______________________29\n_____________|______________________|\n____5'-ACCGCCA___CG___________U_____AUUUG...UUC-3'\n______________UUG__GUUUUAUU_AG_GGGAU\n______________|:|__||||:|:|_||_|||||\n______________AGC__CAAAGUGA_UC_CCCUA\n3'-UUU...CGUUA___AA________G________AAGGU...GCA-5'\n_____________|______________________|\n_____________60_____________________38\n |
14 -- 20 |
47 -- 53 |
-16.4048 kcal/mol |
3.58309 kcal/mol |
2.49358 kcal/mol |
7 29@LB@ | |@LB@ 5'-ACCGCCA CG U AUUUG...UUC-3'@LB@ UUG GUUUUAUU AG GGGAU@LB@ |:| ||||:|:| || |||||@LB@ AGC CAAAGUGA UC CCCUA@LB@3'-UUU...CGUUA AA G AAGGU...GCA-5'@LB@ | |@LB@ 60 38@LB@@LB@@LB@Energy -10.33 kcal/mol@LB@Hybridization Energy -16.4048 kcal/mol@LB@Unfolding Energy - mRNA 3.58309 kcal/mol@LB@Unfolding Energy - sRNA 2.49358 kcal/mol@LB@@LB@Position - mRNA 8 -- 28@LB@Position - sRNA 39 -- 59@LB@Position Seed - mRNA 14 -- 20@LB@Position Seed - sRNA 47 -- 53@LB@ |
194 |
0.009812 |
0.1776 |
b2687 |
luxS |
-7.90 |
0.495572 |
99 -- 106 |
42 -- 49 |
S-ribosylhomocysteine lyase |
|
_____________98_______107\n_____________|________|\n5'-GAA...UCUGA________AUGAU...UCA-3'\n______________AUUCAGGG\n______________|:||||||\n______________UGAGUCCC\n3'-UUU...CAAAG________CUAAA...GCA-5'\n_____________|________|\n_____________50_______41\n |
100 -- 106 |
42 -- 48 |
-12.5942 kcal/mol |
3.05922 kcal/mol |
1.63991 kcal/mol |
98 107@LB@ | |@LB@5'-GAA...UCUGA AUGAU...UCA-3'@LB@ AUUCAGGG@LB@ |:||||||@LB@ UGAGUCCC@LB@3'-UUU...CAAAG CUAAA...GCA-5'@LB@ | |@LB@ 50 41@LB@@LB@@LB@Energy -7.90 kcal/mol@LB@Hybridization Energy -12.5942 kcal/mol@LB@Unfolding Energy - mRNA 3.05922 kcal/mol@LB@Unfolding Energy - sRNA 1.63991 kcal/mol@LB@@LB@Position - mRNA 99 -- 106@LB@Position - sRNA 42 -- 49@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 42 -- 48@LB@ |
163 |
0.007762 |
0.1668 |
b0394 |
mak |
-14.23 |
0.032787 |
242 -- 265 |
40 -- 75 |
manno(fructo)kinase |
|
_____________241__________________________________266\n_____________|____________________________________|\n5'-GUU...GAAGU________UG______G___________________GCAGU...GUG-3'\n______________GAUUGCAC__GGCGAU_____________CAGGGGA\n______________||:|:|||__:||:||_____________|||||||\n______________CUGAUGUG__UCGUUA_____________GUCCCCU\n3'-UUU...CGUUU________UG______AGCAACAAAGUGA_______AAAGG...GCA-5'\n_____________|____________________________________|\n_____________76___________________________________39\n |
259 -- 265 |
40 -- 46 |
-27.5886 kcal/mol |
8.58508 kcal/mol |
4.77786 kcal/mol |
241 266@LB@ | |@LB@5'-GUU...GAAGU UG G GCAGU...GUG-3'@LB@ GAUUGCAC GGCGAU CAGGGGA@LB@ ||:|:||| :||:|| |||||||@LB@ CUGAUGUG UCGUUA GUCCCCU@LB@3'-UUU...CGUUU UG AGCAACAAAGUGA AAAGG...GCA-5'@LB@ | |@LB@ 76 39@LB@@LB@@LB@Energy -14.23 kcal/mol@LB@Hybridization Energy -27.5886 kcal/mol@LB@Unfolding Energy - mRNA 8.58508 kcal/mol@LB@Unfolding Energy - sRNA 4.77786 kcal/mol@LB@@LB@Position - mRNA 242 -- 265@LB@Position - sRNA 40 -- 75@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 40 -- 46@LB@ |