26 |
0.0002514 |
0.03403 |
b4551 |
yheV |
-11.83 |
0.112444 |
191 -- 229 |
42 -- 77 |
DUF2387 family putative metal-binding protein |
|
_____________190_____________________________________230\n_____________|_______________________________________|\n5'-AUC...GAGUA____G__A_G________C__AAAAC________GC___CGCAA...UUG-3'\n______________GAGG_UA_A_AUGGCAAU_CG_____GUUUUAUU__GGG\n______________:||:_||_|_|::|||||_||_____||||:|:|__|||\n______________UUCU_AU_U_UGUCGUUA_GC_____CAAAGUGA__CCC\n3'-UUU...CCCGU____G__G_G________A__AA___________GU___CUAAA...GCA-5'\n_____________|_______________________________________|\n_____________78______________________________________41\n |
217 -- 223 |
48 -- 54 |
-24.6454 kcal/mol |
8.05545 kcal/mol |
4.7648 kcal/mol |
190 230@LB@ | |@LB@5'-AUC...GAGUA G A G C AAAAC GC CGCAA...UUG-3'@LB@ GAGG UA A AUGGCAAU CG GUUUUAUU GGG@LB@ :||: || | |::||||| || ||||:|:| |||@LB@ UUCU AU U UGUCGUUA GC CAAAGUGA CCC@LB@3'-UUU...CCCGU G G G A AA GU CUAAA...GCA-5'@LB@ | |@LB@ 78 41@LB@@LB@@LB@Energy -11.83 kcal/mol@LB@Hybridization Energy -24.6454 kcal/mol@LB@Unfolding Energy - mRNA 8.05545 kcal/mol@LB@Unfolding Energy - sRNA 4.7648 kcal/mol@LB@@LB@Position - mRNA 191 -- 229@LB@Position - sRNA 42 -- 77@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 48 -- 54@LB@ |
132 |
0.005915 |
0.1577 |
b3356 |
yhfA |
-11.83 |
0.112173 |
273 -- 293 |
39 -- 71 |
OsmC family protein |
|
_____________272_______________________________294\n_____________|_________________________________|\n5'-CUG...UUUUA___G_________________________C___AAAGCAC-3'\n______________AUG_ACGGCA____________ACUCAGG_GAU\n______________|::_||:|||____________|||||||_|||\n______________UGU_UGUCGU____________UGAGUCC_CUA\n3'-UUU...UCUGA___G______UAAGCAACAAAG_______C___AAGGU...GCA-5'\n_____________|_________________________________|\n_____________72________________________________38\n |
283 -- 289 |
43 -- 49 |
-20.9729 kcal/mol |
4.393 kcal/mol |
4.74947 kcal/mol |
272 294@LB@ | |@LB@5'-CUG...UUUUA G C AAAGCAC-3'@LB@ AUG ACGGCA ACUCAGG GAU@LB@ |:: ||:||| ||||||| |||@LB@ UGU UGUCGU UGAGUCC CUA@LB@3'-UUU...UCUGA G UAAGCAACAAAG C AAGGU...GCA-5'@LB@ | |@LB@ 72 38@LB@@LB@@LB@Energy -11.83 kcal/mol@LB@Hybridization Energy -20.9729 kcal/mol@LB@Unfolding Energy - mRNA 4.393 kcal/mol@LB@Unfolding Energy - sRNA 4.74947 kcal/mol@LB@@LB@Position - mRNA 273 -- 293@LB@Position - sRNA 39 -- 71@LB@Position Seed - mRNA 283 -- 289@LB@Position Seed - sRNA 43 -- 49@LB@ |
51 |
0.001671 |
0.1153 |
b3527 |
yhjJ |
-13.34 |
0.053290 |
153 -- 204 |
31 -- 75 |
putative periplasmic M16 family chaperone |
|
_____________152_____________________________________________________205\n_____________|_______________________________________________________|\n5'-CUC...UGACC___A___G_____UU___UAUUACCAGGAUA___GA____________CA_____AGGGC...GGC-3'\n______________GAC_ACG_GCAGU__UUU_____________GUU____UCAGGGG_UU__CAUGC\n______________|||_||:_:|||:__||:_____________|||____|||||||_||__|||||\n______________CUG_UGU_UGUCG__AAG_____________CAA____AGUCCCC_AA__GUACG\n3'-UUU...CGUUU___A___G_____UU___CAA_____________AGUG_______U__AG_____AAUAU...GCA-5'\n_____________|_______________________________________________________|\n_____________76______________________________________________________30\n |
189 -- 195 |
41 -- 47 |
-32.6504 kcal/mol |
12.0549 kcal/mol |
7.26183 kcal/mol |
152 205@LB@ | |@LB@5'-CUC...UGACC A G UU UAUUACCAGGAUA GA CA AGGGC...GGC-3'@LB@ GAC ACG GCAGU UUU GUU UCAGGGG UU CAUGC@LB@ ||| ||: :|||: ||: ||| ||||||| || |||||@LB@ CUG UGU UGUCG AAG CAA AGUCCCC AA GUACG@LB@3'-UUU...CGUUU A G UU CAA AGUG U AG AAUAU...GCA-5'@LB@ | |@LB@ 76 30@LB@@LB@@LB@Energy -13.34 kcal/mol@LB@Hybridization Energy -32.6504 kcal/mol@LB@Unfolding Energy - mRNA 12.0549 kcal/mol@LB@Unfolding Energy - sRNA 7.26183 kcal/mol@LB@@LB@Position - mRNA 153 -- 204@LB@Position - sRNA 31 -- 75@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 41 -- 47@LB@ |
103 |
0.004595 |
0.1538 |
b3554 |
yiaF |
-10.61 |
0.191588 |
8 -- 38 |
46 -- 75 |
barrier effect co-colonization resistance factor; DUF3053 family lipoprotein |
|
_____________7_________________________________39\n_____________|_________________________________|\n____5'-AAUCUCU_______AAAAA_________GCACUA______UUUAA...AGC-3'\n______________GGCUACA_____GGCAA__CG______UCAUUU\n______________|:|||||_____:||||__||______|||:|:\n______________CUGAUGU_____UCGUU__GC______AGUGAG\n3'-UUU...CGUUU_______GUG_______AA__AACAA_______UCCCC...GCA-5'\n_____________|_________________________________|\n_____________76________________________________45\n |
8 -- 14 |
69 -- 75 |
-17.9003 kcal/mol |
3.5618 kcal/mol |
3.72616 kcal/mol |
7 39@LB@ | |@LB@ 5'-AAUCUCU AAAAA GCACUA UUUAA...AGC-3'@LB@ GGCUACA GGCAA CG UCAUUU@LB@ |:||||| :|||| || |||:|:@LB@ CUGAUGU UCGUU GC AGUGAG@LB@3'-UUU...CGUUU GUG AA AACAA UCCCC...GCA-5'@LB@ | |@LB@ 76 45@LB@@LB@@LB@Energy -10.61 kcal/mol@LB@Hybridization Energy -17.9003 kcal/mol@LB@Unfolding Energy - mRNA 3.5618 kcal/mol@LB@Unfolding Energy - sRNA 3.72616 kcal/mol@LB@@LB@Position - mRNA 8 -- 38@LB@Position - sRNA 46 -- 75@LB@Position Seed - mRNA 8 -- 14@LB@Position Seed - sRNA 69 -- 75@LB@ |
62 |
0.002558 |
0.1417 |
b3579 |
yiaO |
-11.31 |
0.142375 |
245 -- 258 |
62 -- 75 |
2 3-diketo-L-gulonate-binding periplasmic protein |
|
_____________244____________259\n_____________|______________|\n5'-ACU...GGCCU________U_____CAUCU...AAA-3'\n______________GGCUGCAU_CAGCA\n______________|:||:||:_|||||\n______________CUGAUGUG_GUCGU\n3'-UUU...CGUUU________U_____UAAGC...GCA-5'\n_____________|______________|\n_____________76_____________61\n |
246 -- 252 |
68 -- 74 |
-19.3904 kcal/mol |
4.83304 kcal/mol |
3.25167 kcal/mol |
244 259@LB@ | |@LB@5'-ACU...GGCCU U CAUCU...AAA-3'@LB@ GGCUGCAU CAGCA@LB@ |:||:||: |||||@LB@ CUGAUGUG GUCGU@LB@3'-UUU...CGUUU U UAAGC...GCA-5'@LB@ | |@LB@ 76 61@LB@@LB@@LB@Energy -11.31 kcal/mol@LB@Hybridization Energy -19.3904 kcal/mol@LB@Unfolding Energy - mRNA 4.83304 kcal/mol@LB@Unfolding Energy - sRNA 3.25167 kcal/mol@LB@@LB@Position - mRNA 245 -- 258@LB@Position - sRNA 62 -- 75@LB@Position Seed - mRNA 246 -- 252@LB@Position Seed - sRNA 68 -- 74@LB@ |
72 |
0.002899 |
0.1417 |
b3688 |
yidQ |
-12.98 |
0.064171 |
231 -- 261 |
39 -- 71 |
DUF1375 family outer membrane protein |
|
_____________230_______________________________262\n_____________|_________________________________|\n5'-AUG...UCAUG___________AAUGACA__________A____GCUCC...GAA-3'\n______________AUAUGCAGCGG_________UUACUCGG_GGAU\n______________|:|::||||::_________|:||||:|_||||\n______________UGUGUGUCGUU_________AGUGAGUC_CCUA\n3'-UUU...UCUGA___________AAGCAACAA________C____AAGGU...GCA-5'\n_____________|_________________________________|\n_____________72________________________________38\n |
250 -- 256 |
44 -- 50 |
-25.1937 kcal/mol |
7.46905 kcal/mol |
4.74947 kcal/mol |
230 262@LB@ | |@LB@5'-AUG...UCAUG AAUGACA A GCUCC...GAA-3'@LB@ AUAUGCAGCGG UUACUCGG GGAU@LB@ |:|::||||:: |:||||:| ||||@LB@ UGUGUGUCGUU AGUGAGUC CCUA@LB@3'-UUU...UCUGA AAGCAACAA C AAGGU...GCA-5'@LB@ | |@LB@ 72 38@LB@@LB@@LB@Energy -12.98 kcal/mol@LB@Hybridization Energy -25.1937 kcal/mol@LB@Unfolding Energy - mRNA 7.46905 kcal/mol@LB@Unfolding Energy - sRNA 4.74947 kcal/mol@LB@@LB@Position - mRNA 231 -- 261@LB@Position - sRNA 39 -- 71@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 44 -- 50@LB@ |
192 |
0.00979 |
0.1776 |
b3879 |
yihR |
-14.50 |
0.028125 |
239 -- 282 |
38 -- 72 |
putative sulphoquinovose mutarotase |
|
_____________238__________________________________________283\n_____________|____________________________________________|\n5'-CAU...ACCAA_______U_____GGACAGACC________UGCCG_________AUCAC...UGA-3'\n______________UAUGCAU_GCAGU_________GUUUCACU_____CGGGGGAUU\n______________||::||:_|||:|_________||||||||_____|:|||||||\n______________AUGUGUG_CGUUA_________CAAAGUGA_____GUCCCCUAA\n3'-UUU...UUCUG_______U_____AGCAA__________________________AGGUA...GCA-5'\n_____________|____________________________________________|\n_____________73___________________________________________37\n |
276 -- 282 |
38 -- 44 |
-32.397 kcal/mol |
13.138 kcal/mol |
4.76382 kcal/mol |
238 283@LB@ | |@LB@5'-CAU...ACCAA U GGACAGACC UGCCG AUCAC...UGA-3'@LB@ UAUGCAU GCAGU GUUUCACU CGGGGGAUU@LB@ ||::||: |||:| |||||||| |:|||||||@LB@ AUGUGUG CGUUA CAAAGUGA GUCCCCUAA@LB@3'-UUU...UUCUG U AGCAA AGGUA...GCA-5'@LB@ | |@LB@ 73 37@LB@@LB@@LB@Energy -14.50 kcal/mol@LB@Hybridization Energy -32.397 kcal/mol@LB@Unfolding Energy - mRNA 13.138 kcal/mol@LB@Unfolding Energy - sRNA 4.76382 kcal/mol@LB@@LB@Position - mRNA 239 -- 282@LB@Position - sRNA 38 -- 72@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 38 -- 44@LB@ |
70 |
0.002881 |
0.1417 |
b4144 |
yjeI |
-14.17 |
0.033933 |
177 -- 235 |
31 -- 99 |
DUF4156 family lipoprotein |
|
_____________176______________________________________________________________________236\n_____________|________________________________________________________________________|\n5'-GCA...CGUCC_________AUU________G__UA______________AA_______________CA______G__G____CGCGC...GCA-3'\n______________AGCUCAUUG______AUGGG_AA__AC_AUGCAC_GUAA__________UACUUAG__GGGAUU_UC_GUGC\n______________|||:|||:|______|||||_||__||_|::|||_|:||__________:|||:||__||||||_||_:|||\n______________UCGGGUAGC______UACCC_UU__UG_UGUGUG_CGUU__________GUGAGUC__CCCUAA_AG_UACG\n_____3'-UUUUUU_________ACCCUC_____G__UC__A______U____AAGCAACAAA__________________G____AAUAU...GCA-5'\n_____________|________________________________________________________________________|\n_____________100______________________________________________________________________30\n |
213 -- 219 |
44 -- 50 |
-46.9384 kcal/mol |
12.7048 kcal/mol |
20.0691 kcal/mol |
176 236@LB@ | |@LB@5'-GCA...CGUCC AUU G UA AA CA G G CGCGC...GCA-3'@LB@ AGCUCAUUG AUGGG AA AC AUGCAC GUAA UACUUAG GGGAUU UC GUGC@LB@ |||:|||:| ||||| || || |::||| |:|| :|||:|| |||||| || :|||@LB@ UCGGGUAGC UACCC UU UG UGUGUG CGUU GUGAGUC CCCUAA AG UACG@LB@ 3'-UUUUUU ACCCUC G UC A U AAGCAACAAA G AAUAU...GCA-5'@LB@ | |@LB@ 100 30@LB@@LB@@LB@Energy -14.17 kcal/mol@LB@Hybridization Energy -46.9384 kcal/mol@LB@Unfolding Energy - mRNA 12.7048 kcal/mol@LB@Unfolding Energy - sRNA 20.0691 kcal/mol@LB@@LB@Position - mRNA 177 -- 235@LB@Position - sRNA 31 -- 99@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 44 -- 50@LB@ |
83 |
0.003448 |
0.1462 |
b4231 |
yjfF |
-16.06 |
0.010834 |
60 -- 72 |
39 -- 51 |
putative sugar ABC transporter permease |
|
_____________59____________73\n_____________|_____________|\n5'-CGG...GCUGA_____________GAACA...GAG-3'\n______________UUAUUCAGGGGAU\n______________|:|:|||||||||\n______________AGUGAGUCCCCUA\n3'-UUU...AACAA_____________AAGGU...GCA-5'\n_____________|_____________|\n_____________52____________38\n |
66 -- 72 |
39 -- 45 |
-20.8743 kcal/mol |
3.02031 kcal/mol |
1.79807 kcal/mol |
59 73@LB@ | |@LB@5'-CGG...GCUGA GAACA...GAG-3'@LB@ UUAUUCAGGGGAU@LB@ |:|:|||||||||@LB@ AGUGAGUCCCCUA@LB@3'-UUU...AACAA AAGGU...GCA-5'@LB@ | |@LB@ 52 38@LB@@LB@@LB@Energy -16.06 kcal/mol@LB@Hybridization Energy -20.8743 kcal/mol@LB@Unfolding Energy - mRNA 3.02031 kcal/mol@LB@Unfolding Energy - sRNA 1.79807 kcal/mol@LB@@LB@Position - mRNA 60 -- 72@LB@Position - sRNA 39 -- 51@LB@Position Seed - mRNA 66 -- 72@LB@Position Seed - sRNA 39 -- 45@LB@ |
155 |
0.007577 |
0.1668 |
b4364 |
yjjP |
-9.15 |
0.334468 |
166 -- 178 |
62 -- 74 |
DUF1212 family inner membrane protein |
|
_____________165___________179\n_____________|_____________|\n5'-UCA...UCUGA__A__________CGUCU...UUU-3'\n______________AC_AUACGCAGCA\n______________||_|:||:|||||\n______________UG_UGUGUGUCGU\n3'-UUU...GUUUC__A__________UAAGC...GCA-5'\n_____________|_____________|\n_____________75____________61\n |
172 -- 178 |
62 -- 68 |
-14.8746 kcal/mol |
2.48219 kcal/mol |
3.24359 kcal/mol |
165 179@LB@ | |@LB@5'-UCA...UCUGA A CGUCU...UUU-3'@LB@ AC AUACGCAGCA@LB@ || |:||:|||||@LB@ UG UGUGUGUCGU@LB@3'-UUU...GUUUC A UAAGC...GCA-5'@LB@ | |@LB@ 75 61@LB@@LB@@LB@Energy -9.15 kcal/mol@LB@Hybridization Energy -14.8746 kcal/mol@LB@Unfolding Energy - mRNA 2.48219 kcal/mol@LB@Unfolding Energy - sRNA 3.24359 kcal/mol@LB@@LB@Position - mRNA 166 -- 178@LB@Position - sRNA 62 -- 74@LB@Position Seed - mRNA 172 -- 178@LB@Position Seed - sRNA 62 -- 68@LB@ |