195 |
0.009901 |
0.1776 |
b1098 |
tmk |
-15.44 |
0.015998 |
201 -- 230 |
41 -- 71 |
thymidylate kinase |
|
_____________200_____________________________231\n_____________|_______________________________|\n5'-UAA...AAAAA___________GUAUAUCG______G_____CUGGA...GCG-3'\n______________AUGCGCAGUAA_________UCAUU_AGGGG\n______________|::|:|||:||_________|||:|_|||||\n______________UGUGUGUCGUU_________AGUGA_UCCCC\n3'-UUU...UCUGA___________AAGCAACAA_____G_____UAAAG...GCA-5'\n_____________|_______________________________|\n_____________72______________________________40\n |
205 -- 211 |
61 -- 67 |
-28.5877 kcal/mol |
8.40445 kcal/mol |
4.74226 kcal/mol |
200 231@LB@ | |@LB@5'-UAA...AAAAA GUAUAUCG G CUGGA...GCG-3'@LB@ AUGCGCAGUAA UCAUU AGGGG@LB@ |::|:|||:|| |||:| |||||@LB@ UGUGUGUCGUU AGUGA UCCCC@LB@3'-UUU...UCUGA AAGCAACAA G UAAAG...GCA-5'@LB@ | |@LB@ 72 40@LB@@LB@@LB@Energy -15.44 kcal/mol@LB@Hybridization Energy -28.5877 kcal/mol@LB@Unfolding Energy - mRNA 8.40445 kcal/mol@LB@Unfolding Energy - sRNA 4.74226 kcal/mol@LB@@LB@Position - mRNA 201 -- 230@LB@Position - sRNA 41 -- 71@LB@Position Seed - mRNA 205 -- 211@LB@Position Seed - sRNA 61 -- 67@LB@ |
89 |
0.003963 |
0.1538 |
b1252 |
tonB |
-10.58 |
0.194225 |
25 -- 43 |
64 -- 82 |
membrane spanning protein in TonB-ExbB-ExbD transport complex |
|
_____________24___________________44\n_____________|____________________|\n5'-AGU...UGAAA_________U__________AAAGA...AUC-3'\n______________GGGCGAAGA_CUGCA_ACGG\n______________||||:||||_||:||_||:|\n______________CCCGUUUCU_GAUGU_UGUC\n3'-UUU...CUCUA_______________G____GUUAA...GCA-5'\n_____________|____________________|\n_____________83___________________63\n |
25 -- 31 |
76 -- 82 |
-25.6168 kcal/mol |
4.83236 kcal/mol |
10.2054 kcal/mol |
24 44@LB@ | |@LB@5'-AGU...UGAAA U AAAGA...AUC-3'@LB@ GGGCGAAGA CUGCA ACGG@LB@ ||||:|||| ||:|| ||:|@LB@ CCCGUUUCU GAUGU UGUC@LB@3'-UUU...CUCUA G GUUAA...GCA-5'@LB@ | |@LB@ 83 63@LB@@LB@@LB@Energy -10.58 kcal/mol@LB@Hybridization Energy -25.6168 kcal/mol@LB@Unfolding Energy - mRNA 4.83236 kcal/mol@LB@Unfolding Energy - sRNA 10.2054 kcal/mol@LB@@LB@Position - mRNA 25 -- 43@LB@Position - sRNA 64 -- 82@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 76 -- 82@LB@ |
106 |
0.004704 |
0.1538 |
b0995 |
torR |
-15.76 |
0.013096 |
243 -- 292 |
33 -- 70 |
response regulator in two-component regulatory system with TorS |
|
_____________242_________________________________________________293\n_____________|___________________________________________________|\n5'-CCA...UUACC__G_________ACAAUCCUAC__________A__GGUAUACC________UACGGCGA-3'\n______________CA_GC_GCGAUU__________UUCACUCAGG_GG________GUUUCCGU\n______________||_:|_||:|||__________||||||||||_||________:|||||:|\n______________GU_UG_CGUUAA__________AAGUGAGUCC_CC________UAAAGGUA\n3'-UUU...CUGAU__G__U______GCAACA_________________________________CGAAU...GCA-5'\n_____________|___________________________________________________|\n_____________71__________________________________________________32\n |
286 -- 292 |
33 -- 39 |
-31.2367 kcal/mol |
10.6838 kcal/mol |
4.7924 kcal/mol |
242 293@LB@ | |@LB@5'-CCA...UUACC G ACAAUCCUAC A GGUAUACC UACGGCGA-3'@LB@ CA GC GCGAUU UUCACUCAGG GG GUUUCCGU@LB@ || :| ||:||| |||||||||| || :|||||:|@LB@ GU UG CGUUAA AAGUGAGUCC CC UAAAGGUA@LB@3'-UUU...CUGAU G U GCAACA CGAAU...GCA-5'@LB@ | |@LB@ 71 32@LB@@LB@@LB@Energy -15.76 kcal/mol@LB@Hybridization Energy -31.2367 kcal/mol@LB@Unfolding Energy - mRNA 10.6838 kcal/mol@LB@Unfolding Energy - sRNA 4.7924 kcal/mol@LB@@LB@Position - mRNA 243 -- 292@LB@Position - sRNA 33 -- 70@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 33 -- 39@LB@ |
183 |
0.009087 |
0.1747 |
b3965 |
trmA |
-11.75 |
0.116675 |
18 -- 52 |
35 -- 74 |
tRNA m(5)U54 methyltransferase SAM-dependent; tmRNA m(5)U341 methyltransferase |
|
_____________17____________________________________________53\n_____________|_____________________________________________|\n5'-UCG...UUACC________U____UCCA_________________________C__UAUUA...UUC-3'\n______________GCUGCGCG_CAGC____GAUUCG______CACU____GGAUU_CC\n______________:||:|:|:_||||____:|||||______||||____|||||_||\n______________UGAUGUGU_GUCG____UUAAGC______GUGA____CCUAA_GG\n3'-UUU...GUUUC_______________________AACAAA____GUCC_____A__UACGA...GCA-5'\n_____________|_____________________________________________|\n_____________75____________________________________________34\n |
18 -- 24 |
68 -- 74 |
-28.5766 kcal/mol |
12.0258 kcal/mol |
4.80541 kcal/mol |
17 53@LB@ | |@LB@5'-UCG...UUACC U UCCA C UAUUA...UUC-3'@LB@ GCUGCGCG CAGC GAUUCG CACU GGAUU CC@LB@ :||:|:|: |||| :||||| |||| ||||| ||@LB@ UGAUGUGU GUCG UUAAGC GUGA CCUAA GG@LB@3'-UUU...GUUUC AACAAA GUCC A UACGA...GCA-5'@LB@ | |@LB@ 75 34@LB@@LB@@LB@Energy -11.75 kcal/mol@LB@Hybridization Energy -28.5766 kcal/mol@LB@Unfolding Energy - mRNA 12.0258 kcal/mol@LB@Unfolding Energy - sRNA 4.80541 kcal/mol@LB@@LB@Position - mRNA 18 -- 52@LB@Position - sRNA 35 -- 74@LB@Position Seed - mRNA 18 -- 24@LB@Position Seed - sRNA 68 -- 74@LB@ |
125 |
0.005556 |
0.1564 |
b3384 |
trpS |
-12.26 |
0.091693 |
207 -- 244 |
40 -- 100 |
tryptophanyl-tRNA synthetase |
|
_____________206___________________________________________________________245\n_____________|_____________________________________________________________|\n5'-ACA...UGACU___________UUUUA__________________________________________U__AUUGA...AUG-3'\n______________AAGCCCAUCGU_____GUGG__________CGCACAGC____________C_CUCAGG_GA\n______________|||||||||||_____:|||__________|:||||||____________|_||||||_||\n______________UUCGGGUAGCA_____UACC__________GUGUGUCG____________G_GAGUCC_CU\n______3'-UUUUU___________CCCUC____CGUUUCUGAU________UUAAGCAACAAA_U______C__AAAGG...GCA-5'\n_____________|_____________________________________________________________|\n_____________101___________________________________________________________39\n |
228 -- 234 |
63 -- 69 |
-41.2838 kcal/mol |
11.4457 kcal/mol |
17.5818 kcal/mol |
206 245@LB@ | |@LB@5'-ACA...UGACU UUUUA U AUUGA...AUG-3'@LB@ AAGCCCAUCGU GUGG CGCACAGC C CUCAGG GA@LB@ ||||||||||| :||| |:|||||| | |||||| ||@LB@ UUCGGGUAGCA UACC GUGUGUCG G GAGUCC CU@LB@ 3'-UUUUU CCCUC CGUUUCUGAU UUAAGCAACAAA U C AAAGG...GCA-5'@LB@ | |@LB@ 101 39@LB@@LB@@LB@Energy -12.26 kcal/mol@LB@Hybridization Energy -41.2838 kcal/mol@LB@Unfolding Energy - mRNA 11.4457 kcal/mol@LB@Unfolding Energy - sRNA 17.5818 kcal/mol@LB@@LB@Position - mRNA 207 -- 244@LB@Position - sRNA 40 -- 100@LB@Position Seed - mRNA 228 -- 234@LB@Position Seed - sRNA 63 -- 69@LB@ |
113 |
0.004991 |
0.1545 |
b0888 |
trxB |
-9.59 |
0.285839 |
209 -- 223 |
61 -- 75 |
thioredoxin reductase FAD/NAD(P)-binding |
|
_____________208_____________224\n_____________|_______________|\n5'-AAC...GGCAC___CAA_________ACUGC...UGC-3'\n______________GAC___ACACAGUAA\n______________|||___||||||:||\n______________CUG___UGUGUCGUU\n3'-UUU...CGUUU___AUG_________AAGCA...GCA-5'\n_____________|_______________|\n_____________76______________60\n |
217 -- 223 |
61 -- 67 |
-15.4977 kcal/mol |
2.65453 kcal/mol |
3.25399 kcal/mol |
208 224@LB@ | |@LB@5'-AAC...GGCAC CAA ACUGC...UGC-3'@LB@ GAC ACACAGUAA@LB@ ||| ||||||:||@LB@ CUG UGUGUCGUU@LB@3'-UUU...CGUUU AUG AAGCA...GCA-5'@LB@ | |@LB@ 76 60@LB@@LB@@LB@Energy -9.59 kcal/mol@LB@Hybridization Energy -15.4977 kcal/mol@LB@Unfolding Energy - mRNA 2.65453 kcal/mol@LB@Unfolding Energy - sRNA 3.25399 kcal/mol@LB@@LB@Position - mRNA 209 -- 223@LB@Position - sRNA 61 -- 75@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 61 -- 67@LB@ |
44 |
0.001243 |
0.09943 |
b3064 |
tsaD |
-15.06 |
0.020167 |
98 -- 131 |
41 -- 82 |
tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; glycation binding protein |
|
_____________97___________________________________________132\n_____________|____________________________________________|\n5'-CAU...UAUAA_________G_______GA________________U________CGAAC...UGA-3'\n______________GGGUGAGGA_UAUACAC__GGC_________UUUC_C_CAGGGG\n______________|||::|:||_||:||||__:||_________||||_|_||||||\n______________CCCGUUUCU_AUGUGUG__UCG_________AAAG_G_GUCCCC\n3'-UUU...CUCUA_________G____________UUAAGCAAC____U_A______UAAAG...GCA-5'\n_____________|____________________________________________|\n_____________83___________________________________________40\n |
108 -- 114 |
66 -- 72 |
-38.4936 kcal/mol |
9.4641 kcal/mol |
13.9685 kcal/mol |
97 132@LB@ | |@LB@5'-CAU...UAUAA G GA U CGAAC...UGA-3'@LB@ GGGUGAGGA UAUACAC GGC UUUC C CAGGGG@LB@ |||::|:|| ||:|||| :|| |||| | ||||||@LB@ CCCGUUUCU AUGUGUG UCG AAAG G GUCCCC@LB@3'-UUU...CUCUA G UUAAGCAAC U A UAAAG...GCA-5'@LB@ | |@LB@ 83 40@LB@@LB@@LB@Energy -15.06 kcal/mol@LB@Hybridization Energy -38.4936 kcal/mol@LB@Unfolding Energy - mRNA 9.4641 kcal/mol@LB@Unfolding Energy - sRNA 13.9685 kcal/mol@LB@@LB@Position - mRNA 98 -- 131@LB@Position - sRNA 41 -- 82@LB@Position Seed - mRNA 108 -- 114@LB@Position Seed - sRNA 66 -- 72@LB@ |
30 |
0.0004324 |
0.05073 |
b3364 |
tsgA |
-16.38 |
0.008733 |
203 -- 236 |
38 -- 75 |
putative transporter |
|
_____________202_____________________________________237\n_____________|_______________________________________|\n5'-CCA...AUCAU___________________CAUCAA______CAU_____AGCUU...AUA-3'\n______________GACUA___ACAGCAAU_CG_______GCUCA___GGAUU\n______________|||||___||||||||_||_______:||||___|||||\n______________CUGAU___UGUCGUUA_GC_______UGAGU___CCUAA\n3'-UUU...CGUUU_____GUG________A__AACAAAG_____CC______AGGUA...GCA-5'\n_____________|_______________________________________|\n_____________76______________________________________37\n |
209 -- 215 |
60 -- 66 |
-26.4683 kcal/mol |
5.30565 kcal/mol |
4.77946 kcal/mol |
202 237@LB@ | |@LB@5'-CCA...AUCAU CAUCAA CAU AGCUU...AUA-3'@LB@ GACUA ACAGCAAU CG GCUCA GGAUU@LB@ ||||| |||||||| || :|||| |||||@LB@ CUGAU UGUCGUUA GC UGAGU CCUAA@LB@3'-UUU...CGUUU GUG A AACAAAG CC AGGUA...GCA-5'@LB@ | |@LB@ 76 37@LB@@LB@@LB@Energy -16.38 kcal/mol@LB@Hybridization Energy -26.4683 kcal/mol@LB@Unfolding Energy - mRNA 5.30565 kcal/mol@LB@Unfolding Energy - sRNA 4.77946 kcal/mol@LB@@LB@Position - mRNA 203 -- 236@LB@Position - sRNA 38 -- 75@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 60 -- 66@LB@ |
109 |
0.004772 |
0.1538 |
b2580 |
ung |
-9.28 |
0.319241 |
25 -- 55 |
36 -- 70 |
uracil-DNA-glycosylase |
|
_____________24__________________________________56\n_____________|___________________________________|\n5'-UCU...AAAAC______U___GUA____G_____AAAU________AUUGU...CCG-3'\n______________CACACA_CAA_____UG__UCGC_____GGAUUUU\n______________||||||_|||_____||__||:|_____||||||:\n______________GUGUGU_GUU_____AC__AGUG_____CCUAAAG\n3'-UUU...CUGAU______C___AAGCA__AA____AGUCC_______GUACG...GCA-5'\n_____________|___________________________________|\n_____________71__________________________________35\n |
49 -- 55 |
36 -- 42 |
-19.0861 kcal/mol |
5.04532 kcal/mol |
4.7591 kcal/mol |
24 56@LB@ | |@LB@5'-UCU...AAAAC U GUA G AAAU AUUGU...CCG-3'@LB@ CACACA CAA UG UCGC GGAUUUU@LB@ |||||| ||| || ||:| ||||||:@LB@ GUGUGU GUU AC AGUG CCUAAAG@LB@3'-UUU...CUGAU C AAGCA AA AGUCC GUACG...GCA-5'@LB@ | |@LB@ 71 35@LB@@LB@@LB@Energy -9.28 kcal/mol@LB@Hybridization Energy -19.0861 kcal/mol@LB@Unfolding Energy - mRNA 5.04532 kcal/mol@LB@Unfolding Energy - sRNA 4.7591 kcal/mol@LB@@LB@Position - mRNA 25 -- 55@LB@Position - sRNA 36 -- 70@LB@Position Seed - mRNA 49 -- 55@LB@Position Seed - sRNA 36 -- 42@LB@ |
77 |
0.003184 |
0.1452 |
b4406 |
yaeP |
-9.70 |
0.274250 |
222 -- 254 |
40 -- 71 |
UPF0253 family protein |
|
_____________221________________________________255\n_____________|__________________________________|\n5'-ACC...AGUUA_______A_____A__CG_AAA________C___GACUU...UGC-3'\n______________AUACGCA_GCGGU_CG__G___UCGC_CAG_GGA\n______________|:||:||_||::|_||__|___||:|_|||_|||\n______________UGUGUGU_CGUUA_GC__C___AGUG_GUC_CCU\n3'-UUU...UCUGA_____________A__AA_AA_____A___C___AAAGG...GCA-5'\n_____________|__________________________________|\n_____________72_________________________________39\n |
222 -- 228 |
65 -- 71 |
-25.8836 kcal/mol |
11.435 kcal/mol |
4.74818 kcal/mol |
221 255@LB@ | |@LB@5'-ACC...AGUUA A A CG AAA C GACUU...UGC-3'@LB@ AUACGCA GCGGU CG G UCGC CAG GGA@LB@ |:||:|| ||::| || | ||:| ||| |||@LB@ UGUGUGU CGUUA GC C AGUG GUC CCU@LB@3'-UUU...UCUGA A AA AA A C AAAGG...GCA-5'@LB@ | |@LB@ 72 39@LB@@LB@@LB@Energy -9.70 kcal/mol@LB@Hybridization Energy -25.8836 kcal/mol@LB@Unfolding Energy - mRNA 11.435 kcal/mol@LB@Unfolding Energy - sRNA 4.74818 kcal/mol@LB@@LB@Position - mRNA 222 -- 254@LB@Position - sRNA 40 -- 71@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 65 -- 71@LB@ |