145 |
0.006641 |
0.1605 |
b3316 |
rpsS |
-10.41 |
0.208024 |
125 -- 141 |
61 -- 77 |
30S ribosomal subunit protein S19 |
|
_____________124_______________142\n_____________|_________________|\n5'-GCG...AAGGU____AG__C________CAAGC...CUU-3'\n______________AAGA__AC_CGCAGCAA\n______________||||__||_|:||||||\n______________UUCU__UG_GUGUCGUU\n3'-UUU...CCCGU____GA__U________AAGCA...GCA-5'\n_____________|_________________|\n_____________78________________60\n |
135 -- 141 |
61 -- 67 |
-16.0034 kcal/mol |
2.33428 kcal/mol |
3.25748 kcal/mol |
124 142@LB@ | |@LB@5'-GCG...AAGGU AG C CAAGC...CUU-3'@LB@ AAGA AC CGCAGCAA@LB@ |||| || |:||||||@LB@ UUCU UG GUGUCGUU@LB@3'-UUU...CCCGU GA U AAGCA...GCA-5'@LB@ | |@LB@ 78 60@LB@@LB@@LB@Energy -10.41 kcal/mol@LB@Hybridization Energy -16.0034 kcal/mol@LB@Unfolding Energy - mRNA 2.33428 kcal/mol@LB@Unfolding Energy - sRNA 3.25748 kcal/mol@LB@@LB@Position - mRNA 125 -- 141@LB@Position - sRNA 61 -- 77@LB@Position Seed - mRNA 135 -- 141@LB@Position Seed - sRNA 61 -- 67@LB@ |
148 |
0.006951 |
0.1638 |
b3995 |
rsd |
-9.56 |
0.289012 |
16 -- 28 |
58 -- 70 |
stationary phase protein binds sigma 70 RNA polymerase subunit |
|
_____________15____________29\n_____________|_____________|\n5'-AAU...UUCGC_____________UCCCU...ACU-3'\n______________CAUAUGGCAAUUC\n______________||:|::|||||||\n______________GUGUGUCGUUAAG\n3'-UUU...CUGAU_____________CAACA...GCA-5'\n_____________|_____________|\n_____________71____________57\n |
22 -- 28 |
58 -- 64 |
-15.8606 kcal/mol |
3.09015 kcal/mol |
3.21169 kcal/mol |
15 29@LB@ | |@LB@5'-AAU...UUCGC UCCCU...ACU-3'@LB@ CAUAUGGCAAUUC@LB@ ||:|::|||||||@LB@ GUGUGUCGUUAAG@LB@3'-UUU...CUGAU CAACA...GCA-5'@LB@ | |@LB@ 71 57@LB@@LB@@LB@Energy -9.56 kcal/mol@LB@Hybridization Energy -15.8606 kcal/mol@LB@Unfolding Energy - mRNA 3.09015 kcal/mol@LB@Unfolding Energy - sRNA 3.21169 kcal/mol@LB@@LB@Position - mRNA 16 -- 28@LB@Position - sRNA 58 -- 70@LB@Position Seed - mRNA 22 -- 28@LB@Position Seed - sRNA 58 -- 64@LB@ |
135 |
0.006184 |
0.1605 |
b0637 |
rsfS |
-13.92 |
0.038847 |
179 -- 195 |
40 -- 56 |
ribosomal silencing factor |
|
_____________178_______________196\n_____________|_________________|\n5'-AUU...UCUAU___A_____C_______AAAAC...UCA-3'\n______________UUG_UUCAC_CAGGGGG\n______________|||_|||||_||||||:\n______________AAC_AAGUG_GUCCCCU\n3'-UUU...UAAGC___A_____A_______AAAGG...GCA-5'\n_____________|_________________|\n_____________57________________39\n |
189 -- 195 |
40 -- 46 |
-20.5369 kcal/mol |
4.69018 kcal/mol |
1.92548 kcal/mol |
178 196@LB@ | |@LB@5'-AUU...UCUAU A C AAAAC...UCA-3'@LB@ UUG UUCAC CAGGGGG@LB@ ||| ||||| ||||||:@LB@ AAC AAGUG GUCCCCU@LB@3'-UUU...UAAGC A A AAAGG...GCA-5'@LB@ | |@LB@ 57 39@LB@@LB@@LB@Energy -13.92 kcal/mol@LB@Hybridization Energy -20.5369 kcal/mol@LB@Unfolding Energy - mRNA 4.69018 kcal/mol@LB@Unfolding Energy - sRNA 1.92548 kcal/mol@LB@@LB@Position - mRNA 179 -- 195@LB@Position - sRNA 40 -- 56@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 40 -- 46@LB@ |
178 |
0.008884 |
0.1747 |
b0051 |
rsmA |
-9.94 |
0.250586 |
2 -- 32 |
30 -- 58 |
16S rRNA m(6)A1518 m(6)A1519 dimethyltransferase SAM-dependent |
|
_____________1_______________________________33\n_____________|_______________________________|\n__________5'-G__A___AC___GA______UC__C_______AAAAU...UUA-3'\n______________CG_UGU__CAC__UCAGGG__UU_CCGUGCU\n______________||_|||__|||__||||||__||_||:||||\n______________GC_ACA__GUG__AGUCCC__AA_GGUACGA\n3'-UUU...GUUAA__A___AA___________CU__A_______AUAUU...GCA-5'\n_____________|_______________________________|\n_____________59______________________________29\n |
26 -- 32 |
30 -- 36 |
-26.3106 kcal/mol |
10.5715 kcal/mol |
5.79877 kcal/mol |
1 33@LB@ | |@LB@ 5'-G A AC GA UC C AAAAU...UUA-3'@LB@ CG UGU CAC UCAGGG UU CCGUGCU@LB@ || ||| ||| |||||| || ||:||||@LB@ GC ACA GUG AGUCCC AA GGUACGA@LB@3'-UUU...GUUAA A AA CU A AUAUU...GCA-5'@LB@ | |@LB@ 59 29@LB@@LB@@LB@Energy -9.94 kcal/mol@LB@Hybridization Energy -26.3106 kcal/mol@LB@Unfolding Energy - mRNA 10.5715 kcal/mol@LB@Unfolding Energy - sRNA 5.79877 kcal/mol@LB@@LB@Position - mRNA 2 -- 32@LB@Position - sRNA 30 -- 58@LB@Position Seed - mRNA 26 -- 32@LB@Position Seed - sRNA 30 -- 36@LB@ |
180 |
0.009034 |
0.1747 |
b3146 |
rsmI |
-12.76 |
0.071583 |
191 -- 238 |
34 -- 76 |
16S rRNA C1402 2'-O-ribose methyltransferase SAM-dependent |
|
_____________190____________________________________________________239\n_____________|______________________________________________________|\n5'-CAG...AAUAC____G____AAUGAAACA___C_______GC_GAUAAUU_______________GCUUU...AGG-3'\n______________GGAC_ACAC_________ACA_CAA_UCG__G_______CUCAGGG_____CCA\n______________:|||_||||_________|||_|||_|||__|_______|||||||_____|||\n______________UCUG_UGUG_________UGU_GUU_AGC__C_______GAGUCCC_____GGU\n3'-UUU...CCGUU____A________________C___A___AA_AAAGU_________CUAAA___ACGAA...GCA-5'\n_____________|______________________________________________________|\n_____________77_____________________________________________________33\n |
229 -- 235 |
42 -- 48 |
-25.3144 kcal/mol |
7.73901 kcal/mol |
4.816 kcal/mol |
190 239@LB@ | |@LB@5'-CAG...AAUAC G AAUGAAACA C GC GAUAAUU GCUUU...AGG-3'@LB@ GGAC ACAC ACA CAA UCG G CUCAGGG CCA@LB@ :||| |||| ||| ||| ||| | ||||||| |||@LB@ UCUG UGUG UGU GUU AGC C GAGUCCC GGU@LB@3'-UUU...CCGUU A C A AA AAAGU CUAAA ACGAA...GCA-5'@LB@ | |@LB@ 77 33@LB@@LB@@LB@Energy -12.76 kcal/mol@LB@Hybridization Energy -25.3144 kcal/mol@LB@Unfolding Energy - mRNA 7.73901 kcal/mol@LB@Unfolding Energy - sRNA 4.816 kcal/mol@LB@@LB@Position - mRNA 191 -- 238@LB@Position - sRNA 34 -- 76@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 42 -- 48@LB@ |
46 |
0.001357 |
0.1038 |
b1235 |
rssB |
-13.33 |
0.053430 |
184 -- 194 |
40 -- 50 |
PcnB-degradosome interaction factor; response regulator |
|
_____________183_________195\n_____________|___________|\n5'-AAU...AAAGC__G________GAGAA...CAA-3'\n______________CA_UCAGGGGA\n______________||_||||||||\n______________GU_AGUCCCCU\n3'-UUU...ACAAA__G________AAAGG...GCA-5'\n_____________|___________|\n_____________51__________39\n |
188 -- 194 |
40 -- 46 |
-19.1981 kcal/mol |
4.11697 kcal/mol |
1.75243 kcal/mol |
183 195@LB@ | |@LB@5'-AAU...AAAGC G GAGAA...CAA-3'@LB@ CA UCAGGGGA@LB@ || ||||||||@LB@ GU AGUCCCCU@LB@3'-UUU...ACAAA G AAAGG...GCA-5'@LB@ | |@LB@ 51 39@LB@@LB@@LB@Energy -13.33 kcal/mol@LB@Hybridization Energy -19.1981 kcal/mol@LB@Unfolding Energy - mRNA 4.11697 kcal/mol@LB@Unfolding Energy - sRNA 1.75243 kcal/mol@LB@@LB@Position - mRNA 184 -- 194@LB@Position - sRNA 40 -- 50@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 40 -- 46@LB@ |
186 |
0.009502 |
0.1776 |
b1631 |
rsxG |
-12.74 |
0.072174 |
210 -- 253 |
41 -- 74 |
SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport complex |
|
_____________209____________________________________________254\n_____________|______________________________________________|\n5'-CUG...UGAAA_____CCGAAA________UUA_____G______AUUUG___C___UUCAA...CGA-3'\n______________ACUAU______ACACGGCA___CGUUG___CGCU_____CAG_GGG\n______________||||:______||||:|||___|||||___|:||_____|||_|||\n______________UGAUG______UGUGUCGU___GCAAC___GUGA_____GUC_CCC\n3'-UUU...GUUUC___________________UAA_____AAA________________UAAAG...GCA-5'\n_____________|______________________________________________|\n_____________75_____________________________________________40\n |
222 -- 228 |
62 -- 68 |
-28.539 kcal/mol |
11.0247 kcal/mol |
4.77133 kcal/mol |
209 254@LB@ | |@LB@5'-CUG...UGAAA CCGAAA UUA G AUUUG C UUCAA...CGA-3'@LB@ ACUAU ACACGGCA CGUUG CGCU CAG GGG@LB@ ||||: ||||:||| ||||| |:|| ||| |||@LB@ UGAUG UGUGUCGU GCAAC GUGA GUC CCC@LB@3'-UUU...GUUUC UAA AAA UAAAG...GCA-5'@LB@ | |@LB@ 75 40@LB@@LB@@LB@Energy -12.74 kcal/mol@LB@Hybridization Energy -28.539 kcal/mol@LB@Unfolding Energy - mRNA 11.0247 kcal/mol@LB@Unfolding Energy - sRNA 4.77133 kcal/mol@LB@@LB@Position - mRNA 210 -- 253@LB@Position - sRNA 41 -- 74@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 62 -- 68@LB@ |
198 |
0.01016 |
0.1776 |
b1764 |
selD |
-10.66 |
0.187945 |
118 -- 146 |
45 -- 71 |
selenophosphate synthase |
|
_____________117___________________________147\n_____________|_____________________________|\n5'-UUU...AGCAA_G______G_____AGACACUC_______UCACU...AGC-3'\n______________A_GCGCAG_AAUUC________UCACUUA\n______________|_:|:|||_|||||________|||||:|\n______________U_UGUGUC_UUAAG________AGUGAGU\n3'-UUU...UCUGA_G______G_____CAACAA_________CCCCU...GCA-5'\n_____________|_____________________________|\n_____________72____________________________44\n |
140 -- 146 |
45 -- 51 |
-20.1282 kcal/mol |
5.75637 kcal/mol |
3.71323 kcal/mol |
117 147@LB@ | |@LB@5'-UUU...AGCAA G G AGACACUC UCACU...AGC-3'@LB@ A GCGCAG AAUUC UCACUUA@LB@ | :|:||| ||||| |||||:|@LB@ U UGUGUC UUAAG AGUGAGU@LB@3'-UUU...UCUGA G G CAACAA CCCCU...GCA-5'@LB@ | |@LB@ 72 44@LB@@LB@@LB@Energy -10.66 kcal/mol@LB@Hybridization Energy -20.1282 kcal/mol@LB@Unfolding Energy - mRNA 5.75637 kcal/mol@LB@Unfolding Energy - sRNA 3.71323 kcal/mol@LB@@LB@Position - mRNA 118 -- 146@LB@Position - sRNA 45 -- 71@LB@Position Seed - mRNA 140 -- 146@LB@Position Seed - sRNA 45 -- 51@LB@ |
150 |
0.006982 |
0.1638 |
b3581 |
sgbH |
-9.48 |
0.297019 |
138 -- 176 |
34 -- 74 |
3-keto-L-gulonate 6-phosphate decarboxylase |
|
_____________137________________________________________177\n_____________|__________________________________________|\n5'-UUU...UAUCA__GU_________UC__A___CCG__C_______C_______CGCCC...AAG-3'\n______________AC__UAU_CAGCA__UC_UUG___CA_UUCAGGG___UUUCA\n______________||__:|:_|||||__||_|||___||_:||||||___||:||\n______________UG__GUG_GUCGU__AG_AAC___GU_GAGUCCC___AAGGU\n3'-UUU...GUUUC__AU___U_____UA__C___AAA__________CUA_____ACGAA...GCA-5'\n_____________|__________________________________________|\n_____________75_________________________________________33\n |
164 -- 170 |
42 -- 48 |
-24.4875 kcal/mol |
10.188 kcal/mol |
4.81599 kcal/mol |
137 177@LB@ | |@LB@5'-UUU...UAUCA GU UC A CCG C C CGCCC...AAG-3'@LB@ AC UAU CAGCA UC UUG CA UUCAGGG UUUCA@LB@ || :|: ||||| || ||| || :|||||| ||:||@LB@ UG GUG GUCGU AG AAC GU GAGUCCC AAGGU@LB@3'-UUU...GUUUC AU U UA C AAA CUA ACGAA...GCA-5'@LB@ | |@LB@ 75 33@LB@@LB@@LB@Energy -9.48 kcal/mol@LB@Hybridization Energy -24.4875 kcal/mol@LB@Unfolding Energy - mRNA 10.188 kcal/mol@LB@Unfolding Energy - sRNA 4.81599 kcal/mol@LB@@LB@Position - mRNA 138 -- 176@LB@Position - sRNA 34 -- 74@LB@Position Seed - mRNA 164 -- 170@LB@Position Seed - sRNA 42 -- 48@LB@ |
197 |
0.01006 |
0.1776 |
b0069 |
sgrR |
-8.41 |
0.425671 |
7 -- 22 |
58 -- 74 |
transcriptional DNA-binding transcriptional activator of sgrS sRNA |
|
_____________6_________________23\n_____________|_________________|\n_____5'-CAUCCC____________CC___AAGCA...UGA-3'\n______________ACUGCAU_CAGU__UUC\n______________|||:||:_|||:__|||\n______________UGAUGUG_GUCG__AAG\n3'-UUU...GUUUC_______U____UU___CAACA...GCA-5'\n_____________|_________________|\n_____________75________________57\n |
7 -- 13 |
68 -- 74 |
-13.3461 kcal/mol |
1.63335 kcal/mol |
3.3008 kcal/mol |
6 23@LB@ | |@LB@ 5'-CAUCCC CC AAGCA...UGA-3'@LB@ ACUGCAU CAGU UUC@LB@ |||:||: |||: |||@LB@ UGAUGUG GUCG AAG@LB@3'-UUU...GUUUC U UU CAACA...GCA-5'@LB@ | |@LB@ 75 57@LB@@LB@@LB@Energy -8.41 kcal/mol@LB@Hybridization Energy -13.3461 kcal/mol@LB@Unfolding Energy - mRNA 1.63335 kcal/mol@LB@Unfolding Energy - sRNA 3.3008 kcal/mol@LB@@LB@Position - mRNA 7 -- 22@LB@Position - sRNA 58 -- 74@LB@Position Seed - mRNA 7 -- 13@LB@Position Seed - sRNA 68 -- 74@LB@ |