50 |
0.001668 |
0.1153 |
b2821 |
ptrA |
-10.19 |
0.227412 |
3 -- 12 |
46 -- 55 |
protease III |
|
_____________2__________13\n_____________|__________|\n_________5'-GC__________UAAUC...CCA-3'\n______________UGUUUCGCUU\n______________||||||:||:\n______________ACAAAGUGAG\n3'-UUU...AAGCA__________UCCCC...GCA-5'\n_____________|__________|\n_____________56_________45\n |
6 -- 12 |
46 -- 52 |
-11.8599 kcal/mol |
0.772948 kcal/mol |
0.89782 kcal/mol |
2 13@LB@ | |@LB@ 5'-GC UAAUC...CCA-3'@LB@ UGUUUCGCUU@LB@ ||||||:||:@LB@ ACAAAGUGAG@LB@3'-UUU...AAGCA UCCCC...GCA-5'@LB@ | |@LB@ 56 45@LB@@LB@@LB@Energy -10.19 kcal/mol@LB@Hybridization Energy -11.8599 kcal/mol@LB@Unfolding Energy - mRNA 0.772948 kcal/mol@LB@Unfolding Energy - sRNA 0.89782 kcal/mol@LB@@LB@Position - mRNA 3 -- 12@LB@Position - sRNA 46 -- 55@LB@Position Seed - mRNA 6 -- 12@LB@Position Seed - sRNA 46 -- 52@LB@ |
79 |
0.00332 |
0.1462 |
b1845 |
ptrB |
-10.90 |
0.169644 |
42 -- 70 |
35 -- 70 |
protease II |
|
_____________41____________________________________71\n_____________|_____________________________________|\n5'-UCU...AGAAU________C_____AA____________CU_______UCUGU...AGC-3'\n______________CGCACAGC_AUUUG__________CAGG__GAUUUUC\n______________|:||||||_|||:|__________||||__|||||:|\n______________GUGUGUCG_UAAGC__________GUCC__CUAAAGG\n3'-UUU...CUGAU________U_____AACAAAGUGA____C________UACGA...GCA-5'\n_____________|_____________________________________|\n_____________71____________________________________34\n |
64 -- 70 |
35 -- 41 |
-24.5069 kcal/mol |
8.82337 kcal/mol |
4.7817 kcal/mol |
41 71@LB@ | |@LB@5'-UCU...AGAAU C AA CU UCUGU...AGC-3'@LB@ CGCACAGC AUUUG CAGG GAUUUUC@LB@ |:|||||| |||:| |||| |||||:|@LB@ GUGUGUCG UAAGC GUCC CUAAAGG@LB@3'-UUU...CUGAU U AACAAAGUGA C UACGA...GCA-5'@LB@ | |@LB@ 71 34@LB@@LB@@LB@Energy -10.90 kcal/mol@LB@Hybridization Energy -24.5069 kcal/mol@LB@Unfolding Energy - mRNA 8.82337 kcal/mol@LB@Unfolding Energy - sRNA 4.7817 kcal/mol@LB@@LB@Position - mRNA 42 -- 70@LB@Position - sRNA 35 -- 70@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 35 -- 41@LB@ |
120 |
0.005393 |
0.1553 |
b0523 |
purE |
-13.83 |
0.040764 |
102 -- 146 |
30 -- 75 |
N5-carboxyaminoimidazole ribonucleotide mutase |
|
_____________101________________________________________________147\n_____________|__________________________________________________|\n5'-UGG...UUGCU____U____GC__C____C_____UUCC______UC______________AUUCU...UGA-3'\n______________GAUU_CACA__CA_GCAA__CGUU____UUGCUC______UUUCCGUGCU\n______________||:|_||||__||_||||__||||____|::|||______|||||:||||\n______________CUGA_GUGU__GU_CGUU__GCAA____AGUGAG______AAAGGUACGA\n3'-UUU...CGUUU____U_____________AA____CAA_______UCCCCU__________AUAUU...GCA-5'\n_____________|__________________________________________________|\n_____________76_________________________________________________29\n |
140 -- 146 |
30 -- 36 |
-29.2897 kcal/mol |
7.36654 kcal/mol |
8.08958 kcal/mol |
101 147@LB@ | |@LB@5'-UGG...UUGCU U GC C C UUCC UC AUUCU...UGA-3'@LB@ GAUU CACA CA GCAA CGUU UUGCUC UUUCCGUGCU@LB@ ||:| |||| || |||| |||| |::||| |||||:||||@LB@ CUGA GUGU GU CGUU GCAA AGUGAG AAAGGUACGA@LB@3'-UUU...CGUUU U AA CAA UCCCCU AUAUU...GCA-5'@LB@ | |@LB@ 76 29@LB@@LB@@LB@Energy -13.83 kcal/mol@LB@Hybridization Energy -29.2897 kcal/mol@LB@Unfolding Energy - mRNA 7.36654 kcal/mol@LB@Unfolding Energy - sRNA 8.08958 kcal/mol@LB@@LB@Position - mRNA 102 -- 146@LB@Position - sRNA 30 -- 75@LB@Position Seed - mRNA 140 -- 146@LB@Position Seed - sRNA 30 -- 36@LB@ |
5 |
9.512e-06 |
0.006694 |
b4006 |
purH |
-17.40 |
0.004319 |
188 -- 204 |
31 -- 46 |
IMP cyclohydrolase and phosphoribosylaminoimidazolecarboxamide formyltransferase |
|
_____________187_______________205\n_____________|_________________|\n5'-GUA...AAAUC__________A______AACAA...AGC-3'\n______________CAGGGGAUUU_CCAUGC\n______________||||||||||_||||||\n______________GUCCCCUAAA_GGUACG\n3'-UUU...AGUGA_________________AAUAU...GCA-5'\n_____________|_________________|\n_____________47________________30\n |
191 -- 197 |
37 -- 43 |
-27.6893 kcal/mol |
6.33421 kcal/mol |
3.95768 kcal/mol |
187 205@LB@ | |@LB@5'-GUA...AAAUC A AACAA...AGC-3'@LB@ CAGGGGAUUU CCAUGC@LB@ |||||||||| ||||||@LB@ GUCCCCUAAA GGUACG@LB@3'-UUU...AGUGA AAUAU...GCA-5'@LB@ | |@LB@ 47 30@LB@@LB@@LB@Energy -17.40 kcal/mol@LB@Hybridization Energy -27.6893 kcal/mol@LB@Unfolding Energy - mRNA 6.33421 kcal/mol@LB@Unfolding Energy - sRNA 3.95768 kcal/mol@LB@@LB@Position - mRNA 188 -- 204@LB@Position - sRNA 31 -- 46@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 37 -- 43@LB@ |
7 |
1.819e-05 |
0.009142 |
b1849 |
purT |
-22.68 |
0.000026 |
168 -- 199 |
33 -- 74 |
phosphoribosylglycinamide formyltransferase 2 |
|
_____________167________________________________________200\n_____________|__________________________________________|\n5'-UUU...UUUAU________________AA__________________A_____UAUGA...GUC-3'\n______________ACUGCGCGCGG_AAUU___________UCAGGGGAU_UUCGU\n______________|||:|:|:|:|_||||___________|||||||||_|:|:|\n______________UGAUGUGUGUC_UUAA___________AGUCCCCUA_AGGUA\n3'-UUU...GUUUC___________G____GCAACAAAGUG_________A_____CGAAU...GCA-5'\n_____________|__________________________________________|\n_____________75_________________________________________32\n |
187 -- 193 |
39 -- 45 |
-34.2979 kcal/mol |
6.80622 kcal/mol |
4.81602 kcal/mol |
167 200@LB@ | |@LB@5'-UUU...UUUAU AA A UAUGA...GUC-3'@LB@ ACUGCGCGCGG AAUU UCAGGGGAU UUCGU@LB@ |||:|:|:|:| |||| ||||||||| |:|:|@LB@ UGAUGUGUGUC UUAA AGUCCCCUA AGGUA@LB@3'-UUU...GUUUC G GCAACAAAGUG A CGAAU...GCA-5'@LB@ | |@LB@ 75 32@LB@@LB@@LB@Energy -22.68 kcal/mol@LB@Hybridization Energy -34.2979 kcal/mol@LB@Unfolding Energy - mRNA 6.80622 kcal/mol@LB@Unfolding Energy - sRNA 4.81602 kcal/mol@LB@@LB@Position - mRNA 168 -- 199@LB@Position - sRNA 33 -- 74@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 39 -- 45@LB@ |
17 |
0.0001292 |
0.02674 |
b1854 |
pykA |
-13.69 |
0.043994 |
133 -- 157 |
36 -- 68 |
pyruvate kinase II |
|
_____________132_______________________________158\n_____________|_________________________________|\n5'-GAA...GCCAU______________A__________________AUGUU...ACG-3'\n______________CGCGGC_____GUU_UUUCAUUC___GGAUUUC\n______________|:|:||_____|||_|||||:||___|||||||\n______________GUGUCG_____CAA_AAAGUGAG___CCUAAAG\n3'-UUU...GAUGU______UUAAG___C________UCC_______GUACG...GCA-5'\n_____________|_________________________________|\n_____________69________________________________35\n |
151 -- 157 |
36 -- 42 |
-24.2432 kcal/mol |
5.79946 kcal/mol |
4.75078 kcal/mol |
132 158@LB@ | |@LB@5'-GAA...GCCAU A AUGUU...ACG-3'@LB@ CGCGGC GUU UUUCAUUC GGAUUUC@LB@ |:|:|| ||| |||||:|| |||||||@LB@ GUGUCG CAA AAAGUGAG CCUAAAG@LB@3'-UUU...GAUGU UUAAG C UCC GUACG...GCA-5'@LB@ | |@LB@ 69 35@LB@@LB@@LB@Energy -13.69 kcal/mol@LB@Hybridization Energy -24.2432 kcal/mol@LB@Unfolding Energy - mRNA 5.79946 kcal/mol@LB@Unfolding Energy - sRNA 4.75078 kcal/mol@LB@@LB@Position - mRNA 133 -- 157@LB@Position - sRNA 36 -- 68@LB@Position Seed - mRNA 151 -- 157@LB@Position Seed - sRNA 36 -- 42@LB@ |
161 |
0.00773 |
0.1668 |
b0945 |
pyrD |
-11.84 |
0.111523 |
258 -- 300 |
33 -- 77 |
dihydro-orotate oxidase FMN-linked |
|
_____________257____________________________________________300\n_____________|______________________________________________|\n5'-UGU...CUCAU___U____UUUU________A__CC__A____A_______ACG____-3'\n______________GAG_UUAC____CAGCAAUU_CG__GU_UUAC_____GGA___CCGU\n______________:||_:|||____||||||||_||__||_|:||_____|||___||:|\n______________UUC_GAUG____GUCGUUAA_GC__CA_AGUG_____CCU___GGUA\n3'-UUU...CCCGU___U____UGU____________AA__A____AGUCC___AAA____CGAAU...GCA-5'\n_____________|_______________________________________________|\n_____________78______________________________________________32\n |
271 -- 277 |
59 -- 65 |
-22.2972 kcal/mol |
5.63827 kcal/mol |
4.81602 kcal/mol |
257 300@LB@ | |@LB@5'-UGU...CUCAU U UUUU A CC A A ACG -3'@LB@ GAG UUAC CAGCAAUU CG GU UUAC GGA CCGU@LB@ :|| :||| |||||||| || || |:|| ||| ||:|@LB@ UUC GAUG GUCGUUAA GC CA AGUG CCU GGUA@LB@3'-UUU...CCCGU U UGU AA A AGUCC AAA CGAAU...GCA-5'@LB@ | |@LB@ 78 32@LB@@LB@@LB@Energy -11.84 kcal/mol@LB@Hybridization Energy -22.2972 kcal/mol@LB@Unfolding Energy - mRNA 5.63827 kcal/mol@LB@Unfolding Energy - sRNA 4.81602 kcal/mol@LB@@LB@Position - mRNA 258 -- 300@LB@Position - sRNA 33 -- 77@LB@Position Seed - mRNA 271 -- 277@LB@Position Seed - sRNA 59 -- 65@LB@ |
34 |
0.0005364 |
0.05552 |
b4244 |
pyrI |
-10.55 |
0.196904 |
198 -- 215 |
60 -- 77 |
aspartate carbamoyltransferase regulatory subunit |
|
_____________197________________216\n_____________|__________________|\n5'-UUC...AAAUA_____G_______A____AAAUU...UCA-3'\n______________GAGAU_ACACACG_UAAU\n______________:|||:_||||||:_:|||\n______________UUCUG_UGUGUGU_GUUA\n3'-UUU...CCCGU_____A_______C____AGCAA...GCA-5'\n_____________|__________________|\n_____________78_________________59\n |
204 -- 210 |
65 -- 71 |
-15.1619 kcal/mol |
1.32522 kcal/mol |
3.29036 kcal/mol |
197 216@LB@ | |@LB@5'-UUC...AAAUA G A AAAUU...UCA-3'@LB@ GAGAU ACACACG UAAU@LB@ :|||: ||||||: :|||@LB@ UUCUG UGUGUGU GUUA@LB@3'-UUU...CCCGU A C AGCAA...GCA-5'@LB@ | |@LB@ 78 59@LB@@LB@@LB@Energy -10.55 kcal/mol@LB@Hybridization Energy -15.1619 kcal/mol@LB@Unfolding Energy - mRNA 1.32522 kcal/mol@LB@Unfolding Energy - sRNA 3.29036 kcal/mol@LB@@LB@Position - mRNA 198 -- 215@LB@Position - sRNA 60 -- 77@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 65 -- 71@LB@ |
14 |
0.0001025 |
0.0245 |
b4051 |
qorA |
-14.73 |
0.024599 |
192 -- 224 |
48 -- 76 |
quinone oxidoreductase NADPH-dependent |
|
_____________191_______________________________225\n_____________|_________________________________|\n5'-CGC...GUUCU___GG___________CA__AA___AA______AAGCA...UCG-3'\n______________GGA__ACACAUGGCAA__CG__UUG__UUUCAC\n______________:||__|||||::||||__||__|||__||||||\n______________UCU__UGUGUGUCGUU__GC__AAC__AAAGUG\n3'-UUU...CCGUU___GA___________AA_______________AGUCC...GCA-5'\n_____________|_________________________________|\n_____________77________________________________47\n |
201 -- 207 |
61 -- 67 |
-23.6874 kcal/mol |
5.27405 kcal/mol |
3.68714 kcal/mol |
191 225@LB@ | |@LB@5'-CGC...GUUCU GG CA AA AA AAGCA...UCG-3'@LB@ GGA ACACAUGGCAA CG UUG UUUCAC@LB@ :|| |||||::|||| || ||| ||||||@LB@ UCU UGUGUGUCGUU GC AAC AAAGUG@LB@3'-UUU...CCGUU GA AA AGUCC...GCA-5'@LB@ | |@LB@ 77 47@LB@@LB@@LB@Energy -14.73 kcal/mol@LB@Hybridization Energy -23.6874 kcal/mol@LB@Unfolding Energy - mRNA 5.27405 kcal/mol@LB@Unfolding Energy - sRNA 3.68714 kcal/mol@LB@@LB@Position - mRNA 192 -- 224@LB@Position - sRNA 48 -- 76@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 61 -- 67@LB@ |
123 |
0.005464 |
0.1553 |
b3746 |
ravA |
-13.51 |
0.048673 |
243 -- 263 |
41 -- 65 |
hexameric AAA+ MoxR family ATPase putative molecular chaperone |
|
_____________242_______________________264\n_____________|_________________________|\n5'-UGA...GCCUG____________GAAA_________CUUUA...UAU-3'\n______________AGCAGUUCGUUG________AGGGG\n______________||||:|||||||________|||||\n______________UCGUUAAGCAAC________UCCCC\n3'-UUU...GUGUG____________AAAGUGAG_____UAAAG...GCA-5'\n_____________|_________________________|\n_____________66________________________40\n |
248 -- 254 |
54 -- 60 |
-25.3509 kcal/mol |
7.14336 kcal/mol |
4.70281 kcal/mol |
242 264@LB@ | |@LB@5'-UGA...GCCUG GAAA CUUUA...UAU-3'@LB@ AGCAGUUCGUUG AGGGG@LB@ ||||:||||||| |||||@LB@ UCGUUAAGCAAC UCCCC@LB@3'-UUU...GUGUG AAAGUGAG UAAAG...GCA-5'@LB@ | |@LB@ 66 40@LB@@LB@@LB@Energy -13.51 kcal/mol@LB@Hybridization Energy -25.3509 kcal/mol@LB@Unfolding Energy - mRNA 7.14336 kcal/mol@LB@Unfolding Energy - sRNA 4.70281 kcal/mol@LB@@LB@Position - mRNA 243 -- 263@LB@Position - sRNA 41 -- 65@LB@Position Seed - mRNA 248 -- 254@LB@Position Seed - sRNA 54 -- 60@LB@ |