| 61 |
0.003607 |
0.1972 |
bsu06860 |
yezE |
-12.02 |
0.104394 |
226 -- 262 |
26 -- 52 |
TetR family transcriptional regulator |
|
_____________225___________________________________263\n_____________|_____________________________________|\n5'-AGG...UGAUA___CG____U___UCACAGGGC________UUU____AGAGU...UGC-3'\n______________CGG__CUUG_UCU_________GAUAGAGG___UUGG\n______________|||__||||_|||_________||||||||___||||\n______________GCC__GAAC_AGA_________CUAUCUCC___AACC\n3'-UUU...AAAAA___UA____U____________________CC_____CCUUG...AUA-5'\n_____________|_____________________________________|\n_____________53____________________________________25\n |
249 -- 255 |
32 -- 38 |
-24.4528 kcal/mol |
11.4473 kcal/mol |
0.980817 kcal/mol |
225 263@LB@ | |@LB@5'-AGG...UGAUA CG U UCACAGGGC UUU AGAGU...UGC-3'@LB@ CGG CUUG UCU GAUAGAGG UUGG@LB@ ||| |||| ||| |||||||| ||||@LB@ GCC GAAC AGA CUAUCUCC AACC@LB@3'-UUU...AAAAA UA U CC CCUUG...AUA-5'@LB@ | |@LB@ 53 25@LB@@LB@@LB@Energy -12.02 kcal/mol@LB@Hybridization Energy -24.4528 kcal/mol@LB@Unfolding Energy - mRNA 11.4473 kcal/mol@LB@Unfolding Energy - sRNA 0.980817 kcal/mol@LB@@LB@Position - mRNA 226 -- 262@LB@Position - sRNA 26 -- 52@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 62 |
0.003827 |
0.2059 |
bsu11360 |
appD |
-16.60 |
0.014008 |
157 -- 196 |
21 -- 48 |
oligopeptide transport ATP-binding protein AppD |
|
_____________156______________________________________197\n_____________|________________________________________|\n5'-AUG...CUUUC______AAACG_____CAACA_______GGAAA_______UAGCA...AAG-3'\n______________UCUUGA_____UUUGA_____AGAGGGG_____GGGGAGC\n______________||||||_____|:|||_____|||||||_____|||||:|\n______________AGAACU_____AGACU_____UCUCCCC_____CCCCUUG\n3'-UUU...AGCCU________________A___________AA__________UCUCU...AUA-5'\n_____________|________________________________________|\n_____________49_______________________________________20\n |
190 -- 196 |
21 -- 27 |
-30.7931 kcal/mol |
11.4214 kcal/mol |
2.76831 kcal/mol |
156 197@LB@ | |@LB@5'-AUG...CUUUC AAACG CAACA GGAAA UAGCA...AAG-3'@LB@ UCUUGA UUUGA AGAGGGG GGGGAGC@LB@ |||||| |:||| ||||||| |||||:|@LB@ AGAACU AGACU UCUCCCC CCCCUUG@LB@3'-UUU...AGCCU A AA UCUCU...AUA-5'@LB@ | |@LB@ 49 20@LB@@LB@@LB@Energy -16.60 kcal/mol@LB@Hybridization Energy -30.7931 kcal/mol@LB@Unfolding Energy - mRNA 11.4214 kcal/mol@LB@Unfolding Energy - sRNA 2.76831 kcal/mol@LB@@LB@Position - mRNA 157 -- 196@LB@Position - sRNA 21 -- 48@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 21 -- 27@LB@ |
| 63 |
0.003897 |
0.2064 |
bsu14900 |
ctaD |
-14.39 |
0.039562 |
155 -- 192 |
22 -- 52 |
cytochrome c oxidase subunit 1 |
|
_____________154____________________________________193\n_____________|______________________________________|\n5'-GUG...AAAAG____AAGCAA__AG__A___AA___AGAUA________GGUCA...UGG-3'\n______________CGGA______GU__GG_AGA__GGG_____UUGGGGGA\n______________||||______:|__|:_|||__|||_____||||||:|\n______________GCCU______UA__CU_UCU__CCC_____AACCCCUU\n3'-UUU...AAAAA____AGAAC___GA__A___C_________________GUCUC...AUA-5'\n_____________|______________________________________|\n_____________53_____________________________________21\n |
186 -- 192 |
22 -- 28 |
-20.3858 kcal/mol |
4.11152 kcal/mol |
1.8808 kcal/mol |
154 193@LB@ | |@LB@5'-GUG...AAAAG AAGCAA AG A AA AGAUA GGUCA...UGG-3'@LB@ CGGA GU GG AGA GGG UUGGGGGA@LB@ |||| :| |: ||| ||| ||||||:|@LB@ GCCU UA CU UCU CCC AACCCCUU@LB@3'-UUU...AAAAA AGAAC GA A C GUCUC...AUA-5'@LB@ | |@LB@ 53 21@LB@@LB@@LB@Energy -14.39 kcal/mol@LB@Hybridization Energy -20.3858 kcal/mol@LB@Unfolding Energy - mRNA 4.11152 kcal/mol@LB@Unfolding Energy - sRNA 1.8808 kcal/mol@LB@@LB@Position - mRNA 155 -- 192@LB@Position - sRNA 22 -- 52@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 22 -- 28@LB@ |
| 64 |
0.004032 |
0.2071 |
bsu23050 |
fmnP |
-11.92 |
0.108419 |
30 -- 48 |
32 -- 51 |
riboflavin transporter FmnP |
|
_____________29___________________49\n_____________|____________________|\n5'-GUG...AGUCU____GG___GAA________UUCAU...UAA-3'\n______________GGAU___GA___GAUGGAGG\n______________||||___||___|||:||||\n______________CCUA___CU___CUAUCUCC\n3'-UUU...AAAAG____GAA__AGA________CCAAC...AUA-5'\n_____________|____________________|\n_____________52___________________31\n |
42 -- 48 |
32 -- 38 |
-18.1391 kcal/mol |
5.24431 kcal/mol |
0.97021 kcal/mol |
29 49@LB@ | |@LB@5'-GUG...AGUCU GG GAA UUCAU...UAA-3'@LB@ GGAU GA GAUGGAGG@LB@ |||| || |||:||||@LB@ CCUA CU CUAUCUCC@LB@3'-UUU...AAAAG GAA AGA CCAAC...AUA-5'@LB@ | |@LB@ 52 31@LB@@LB@@LB@Energy -11.92 kcal/mol@LB@Hybridization Energy -18.1391 kcal/mol@LB@Unfolding Energy - mRNA 5.24431 kcal/mol@LB@Unfolding Energy - sRNA 0.97021 kcal/mol@LB@@LB@Position - mRNA 30 -- 48@LB@Position - sRNA 32 -- 51@LB@Position Seed - mRNA 42 -- 48@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 65 |
0.004149 |
0.2071 |
bsu25230 |
yqxD |
-11.91 |
0.108824 |
196 -- 217 |
21 -- 43 |
Evidence 4: Homologs of previously reported genes of unknown function; PubMedId: 9387153 |
|
_____________195_____________________218\n_____________|_______________________|\n5'-ACA...CAGGA____A________A____A____UACUC...CAU-3'\n______________GUUU_AUGGAGGG__UGG_GAAU\n______________:|:|_||:|||||__|||_|||:\n______________UAGA_UAUCUCCC__ACC_CUUG\n3'-UUU...AGAAC____C________CA___C____UCUCU...AUA-5'\n_____________|_______________________|\n_____________44______________________20\n |
202 -- 208 |
31 -- 37 |
-19.0868 kcal/mol |
4.40975 kcal/mol |
2.76238 kcal/mol |
195 218@LB@ | |@LB@5'-ACA...CAGGA A A A UACUC...CAU-3'@LB@ GUUU AUGGAGGG UGG GAAU@LB@ :|:| ||:||||| ||| |||:@LB@ UAGA UAUCUCCC ACC CUUG@LB@3'-UUU...AGAAC C CA C UCUCU...AUA-5'@LB@ | |@LB@ 44 20@LB@@LB@@LB@Energy -11.91 kcal/mol@LB@Hybridization Energy -19.0868 kcal/mol@LB@Unfolding Energy - mRNA 4.40975 kcal/mol@LB@Unfolding Energy - sRNA 2.76238 kcal/mol@LB@@LB@Position - mRNA 196 -- 217@LB@Position - sRNA 21 -- 43@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 31 -- 37@LB@ |
| 66 |
0.004158 |
0.2071 |
bsu22770 |
mtrB |
-14.22 |
0.042769 |
173 -- 192 |
31 -- 51 |
transcription attenuation protein MtrB |
|
_____________172___________________193\n_____________|_____________________|\n5'-UAG...CGCCA______AAUAAA_________UGCUA...ACC-3'\n______________GGA_CU______GAUAGAGGG\n______________|||_||______|||||||||\n______________CCU_GA______CUAUCUCCC\n3'-UUU...AAAAG___A__ACUAGA_________CAACC...AUA-5'\n_____________|_____________________|\n_____________52____________________30\n |
186 -- 192 |
31 -- 37 |
-18.8398 kcal/mol |
3.65373 kcal/mol |
0.970589 kcal/mol |
172 193@LB@ | |@LB@5'-UAG...CGCCA AAUAAA UGCUA...ACC-3'@LB@ GGA CU GAUAGAGGG@LB@ ||| || |||||||||@LB@ CCU GA CUAUCUCCC@LB@3'-UUU...AAAAG A ACUAGA CAACC...AUA-5'@LB@ | |@LB@ 52 30@LB@@LB@@LB@Energy -14.22 kcal/mol@LB@Hybridization Energy -18.8398 kcal/mol@LB@Unfolding Energy - mRNA 3.65373 kcal/mol@LB@Unfolding Energy - sRNA 0.970589 kcal/mol@LB@@LB@Position - mRNA 173 -- 192@LB@Position - sRNA 31 -- 51@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 31 -- 37@LB@ |
| 67 |
0.004159 |
0.2071 |
bsu31830 |
yueE |
-13.48 |
0.058566 |
169 -- 197 |
28 -- 51 |
phosphohydrolase YueE |
|
_____________168___________________________198\n_____________|_____________________________|\n5'-UAG...UGUUA___U___AAAAAU____AAA_________UCCAU...AUG-3'\n______________GGA_UCU______AUCU___GGAGGGGUU\n______________|||_|||______||||___:||||||||\n______________CCU_AGA______UAGA___UCUCCCCAA\n3'-UUU...AAAAG_______AC________CUA_________CCCCU...AUA-5'\n_____________|_____________________________|\n_____________52____________________________27\n |
191 -- 197 |
28 -- 34 |
-19.6632 kcal/mol |
5.21125 kcal/mol |
0.974859 kcal/mol |
168 198@LB@ | |@LB@5'-UAG...UGUUA U AAAAAU AAA UCCAU...AUG-3'@LB@ GGA UCU AUCU GGAGGGGUU@LB@ ||| ||| |||| :||||||||@LB@ CCU AGA UAGA UCUCCCCAA@LB@3'-UUU...AAAAG AC CUA CCCCU...AUA-5'@LB@ | |@LB@ 52 27@LB@@LB@@LB@Energy -13.48 kcal/mol@LB@Hybridization Energy -19.6632 kcal/mol@LB@Unfolding Energy - mRNA 5.21125 kcal/mol@LB@Unfolding Energy - sRNA 0.974859 kcal/mol@LB@@LB@Position - mRNA 169 -- 197@LB@Position - sRNA 28 -- 51@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 28 -- 34@LB@ |
| 68 |
0.004453 |
0.2184 |
bsu22580 |
ypiB |
-13.80 |
0.051176 |
183 -- 197 |
21 -- 39 |
Evidence 4: Homologs of previously reported genes of unknown function; PubMedId: 16847875 |
|
_____________182_________________198\n_____________|___________________|\n5'-AGC...CGAAC________A__________UACAU...ACU-3'\n______________GAUAGAGG_____GGGAAU\n______________||||||||_____|||||:\n______________CUAUCUCC_____CCCUUG\n3'-UUU...CUAGA________CCAAC______UCUCU...AUA-5'\n_____________|___________________|\n_____________40__________________20\n |
184 -- 190 |
32 -- 38 |
-18.5124 kcal/mol |
2.13446 kcal/mol |
2.58006 kcal/mol |
182 198@LB@ | |@LB@5'-AGC...CGAAC A UACAU...ACU-3'@LB@ GAUAGAGG GGGAAU@LB@ |||||||| |||||:@LB@ CUAUCUCC CCCUUG@LB@3'-UUU...CUAGA CCAAC UCUCU...AUA-5'@LB@ | |@LB@ 40 20@LB@@LB@@LB@Energy -13.80 kcal/mol@LB@Hybridization Energy -18.5124 kcal/mol@LB@Unfolding Energy - mRNA 2.13446 kcal/mol@LB@Unfolding Energy - sRNA 2.58006 kcal/mol@LB@@LB@Position - mRNA 183 -- 197@LB@Position - sRNA 21 -- 39@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 69 |
0.004753 |
0.2298 |
bsu24850 |
glcK |
-6.97 |
0.496286 |
33 -- 46 |
15 -- 29 |
glucokinase |
|
_____________32______________47\n_____________|_______________|\n5'-GCU...UUAUU____A__________CUUGA...UUC-3'\n______________UUGG__GACAGAGAG\n______________||||__:||||||||\n______________AACC__UUGUCUCUC\n3'-UUU...UCCCC____CC_________AUCGA...AUA-5'\n_____________|_______________|\n_____________30______________14\n |
40 -- 46 |
15 -- 21 |
-16.6304 kcal/mol |
3.64593 kcal/mol |
6.01316 kcal/mol |
32 47@LB@ | |@LB@5'-GCU...UUAUU A CUUGA...UUC-3'@LB@ UUGG GACAGAGAG@LB@ |||| :||||||||@LB@ AACC UUGUCUCUC@LB@3'-UUU...UCCCC CC AUCGA...AUA-5'@LB@ | |@LB@ 30 14@LB@@LB@@LB@Energy -6.97 kcal/mol@LB@Hybridization Energy -16.6304 kcal/mol@LB@Unfolding Energy - mRNA 3.64593 kcal/mol@LB@Unfolding Energy - sRNA 6.01316 kcal/mol@LB@@LB@Position - mRNA 33 -- 46@LB@Position - sRNA 15 -- 29@LB@Position Seed - mRNA 40 -- 46@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 70 |
0.004864 |
0.2318 |
bsu03720 |
gerKB |
-15.05 |
0.029438 |
176 -- 191 |
30 -- 44 |
spore germination protein KB |
|
_____________175_______________192\n_____________|_________________|\n5'-UUA...GAUUA___________AA____AAGUG...GCA-3'\n______________GGUCUGA_AGA__GGGG\n______________|:|||||_|||__||||\n______________CUAGACU_UCU__CCCC\n3'-UUU...UAGAA_______A_________AACCC...AUA-5'\n_____________|_________________|\n_____________45________________29\n |
176 -- 182 |
38 -- 44 |
-18.3492 kcal/mol |
2.32731 kcal/mol |
0.969452 kcal/mol |
175 192@LB@ | |@LB@5'-UUA...GAUUA AA AAGUG...GCA-3'@LB@ GGUCUGA AGA GGGG@LB@ |:||||| ||| ||||@LB@ CUAGACU UCU CCCC@LB@3'-UUU...UAGAA A AACCC...AUA-5'@LB@ | |@LB@ 45 29@LB@@LB@@LB@Energy -15.05 kcal/mol@LB@Hybridization Energy -18.3492 kcal/mol@LB@Unfolding Energy - mRNA 2.32731 kcal/mol@LB@Unfolding Energy - sRNA 0.969452 kcal/mol@LB@@LB@Position - mRNA 176 -- 191@LB@Position - sRNA 30 -- 44@LB@Position Seed - mRNA 176 -- 182@LB@Position Seed - sRNA 38 -- 44@LB@ |
