181 |
0.0171 |
0.3152 |
bsu32040 |
yuiF |
-15.17 |
0.027943 |
179 -- 194 |
29 -- 51 |
amino acid transporter YuiF |
|
_____________178_____________________195\n_____________|_______________________|\n5'-ACA...CUAAA_______________________AUCAU...GGU-3'\n______________GGAUUUU_______UGGAGGGGU\n______________||||:||_______|:|||||||\n______________CCUAGAA_______AUCUCCCCA\n3'-UUU...AAAAG_______CUAGACU_________ACCCC...AUA-5'\n_____________|_______________________|\n_____________52______________________28\n |
188 -- 194 |
29 -- 35 |
-21.3957 kcal/mol |
5.25498 kcal/mol |
0.974539 kcal/mol |
178 195@LB@ | |@LB@5'-ACA...CUAAA AUCAU...GGU-3'@LB@ GGAUUUU UGGAGGGGU@LB@ ||||:|| |:|||||||@LB@ CCUAGAA AUCUCCCCA@LB@3'-UUU...AAAAG CUAGACU ACCCC...AUA-5'@LB@ | |@LB@ 52 28@LB@@LB@@LB@Energy -15.17 kcal/mol@LB@Hybridization Energy -21.3957 kcal/mol@LB@Unfolding Energy - mRNA 5.25498 kcal/mol@LB@Unfolding Energy - sRNA 0.974539 kcal/mol@LB@@LB@Position - mRNA 179 -- 194@LB@Position - sRNA 29 -- 51@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 29 -- 35@LB@ |
182 |
0.01724 |
0.3161 |
bsu22340 |
nth |
-14.82 |
0.032761 |
30 -- 59 |
25 -- 52 |
endonuclease III |
|
_____________29______________________________60\n_____________|_______________________________|\n5'-CAG...UUGAC______________A_____AGAAAAA____CUUAA...UAG-3'\n______________CGGAUUUUG_UUUG_AUGGA_______UGGG\n______________|||||:|||_|:||_||:||_______||||\n______________GCCUAGAAC_AGAC_UAUCU_______ACCC\n3'-UUU...AAAAA_________U__________CCCCA______CUUGU...AUA-5'\n_____________|_______________________________|\n_____________53______________________________24\n |
32 -- 38 |
44 -- 50 |
-22.2299 kcal/mol |
6.43208 kcal/mol |
0.980838 kcal/mol |
29 60@LB@ | |@LB@5'-CAG...UUGAC A AGAAAAA CUUAA...UAG-3'@LB@ CGGAUUUUG UUUG AUGGA UGGG@LB@ |||||:||| |:|| ||:|| ||||@LB@ GCCUAGAAC AGAC UAUCU ACCC@LB@3'-UUU...AAAAA U CCCCA CUUGU...AUA-5'@LB@ | |@LB@ 53 24@LB@@LB@@LB@Energy -14.82 kcal/mol@LB@Hybridization Energy -22.2299 kcal/mol@LB@Unfolding Energy - mRNA 6.43208 kcal/mol@LB@Unfolding Energy - sRNA 0.980838 kcal/mol@LB@@LB@Position - mRNA 30 -- 59@LB@Position - sRNA 25 -- 52@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 44 -- 50@LB@ |
183 |
0.01776 |
0.3237 |
bsu08550 |
sspK |
-13.38 |
0.060997 |
172 -- 193 |
31 -- 48 |
small acid-soluble spore protein K |
|
_____________171____________________194\n_____________|______________________|\n5'-UUU...CAACU_________C__ACC_______AUAUG...ACG-3'\n______________UUUUGAUCU_GA___UAGGGGG\n______________|:|||||||_||___|||:|||\n______________AGAACUAGA_CU___AUCUCCC\n3'-UUU...AGCCU______________________CAACC...AUA-5'\n_____________|______________________|\n_____________49_____________________30\n |
187 -- 193 |
31 -- 37 |
-20.1262 kcal/mol |
5.7766 kcal/mol |
0.970395 kcal/mol |
171 194@LB@ | |@LB@5'-UUU...CAACU C ACC AUAUG...ACG-3'@LB@ UUUUGAUCU GA UAGGGGG@LB@ |:||||||| || |||:|||@LB@ AGAACUAGA CU AUCUCCC@LB@3'-UUU...AGCCU CAACC...AUA-5'@LB@ | |@LB@ 49 30@LB@@LB@@LB@Energy -13.38 kcal/mol@LB@Hybridization Energy -20.1262 kcal/mol@LB@Unfolding Energy - mRNA 5.7766 kcal/mol@LB@Unfolding Energy - sRNA 0.970395 kcal/mol@LB@@LB@Position - mRNA 172 -- 193@LB@Position - sRNA 31 -- 48@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 31 -- 37@LB@ |
184 |
0.01795 |
0.3254 |
bsu30470 |
ytzC |
-13.40 |
0.060457 |
189 -- 197 |
28 -- 36 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________188_______198\n_____________|_________|\n5'-UUC...CAAGA_________ACUGU...AUU-3'\n______________GGAGGGGUU\n______________:||||||||\n______________UCUCCCCAA\n3'-UUU...GACUA_________CCCCU...AUA-5'\n_____________|_________|\n_____________37________27\n |
191 -- 197 |
28 -- 34 |
-16.1349 kcal/mol |
2.59994 kcal/mol |
0.134381 kcal/mol |
188 198@LB@ | |@LB@5'-UUC...CAAGA ACUGU...AUU-3'@LB@ GGAGGGGUU@LB@ :||||||||@LB@ UCUCCCCAA@LB@3'-UUU...GACUA CCCCU...AUA-5'@LB@ | |@LB@ 37 27@LB@@LB@@LB@Energy -13.40 kcal/mol@LB@Hybridization Energy -16.1349 kcal/mol@LB@Unfolding Energy - mRNA 2.59994 kcal/mol@LB@Unfolding Energy - sRNA 0.134381 kcal/mol@LB@@LB@Position - mRNA 189 -- 197@LB@Position - sRNA 28 -- 36@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 28 -- 34@LB@ |
185 |
0.01858 |
0.3269 |
bsu27560 |
hisS |
-8.40 |
0.345340 |
122 -- 132 |
25 -- 38 |
histidine--tRNA ligase |
|
_____________121____________133\n_____________|______________|\n5'-GCG...GUAUA_______C______AGUUU...CUU-3'\n______________GUAGGGG____GGG\n______________:|||:||____|||\n______________UAUCUCC____CCC\n3'-UUU...UAGAC_______CCAA___CUUGU...AUA-5'\n_____________|______________|\n_____________39_____________24\n |
122 -- 128 |
32 -- 38 |
-11.8618 kcal/mol |
2.79445 kcal/mol |
0.662893 kcal/mol |
121 133@LB@ | |@LB@5'-GCG...GUAUA C AGUUU...CUU-3'@LB@ GUAGGGG GGG@LB@ :|||:|| |||@LB@ UAUCUCC CCC@LB@3'-UUU...UAGAC CCAA CUUGU...AUA-5'@LB@ | |@LB@ 39 24@LB@@LB@@LB@Energy -8.40 kcal/mol@LB@Hybridization Energy -11.8618 kcal/mol@LB@Unfolding Energy - mRNA 2.79445 kcal/mol@LB@Unfolding Energy - sRNA 0.662893 kcal/mol@LB@@LB@Position - mRNA 122 -- 132@LB@Position - sRNA 25 -- 38@LB@Position Seed - mRNA 122 -- 128@LB@Position Seed - sRNA 32 -- 38@LB@ |
186 |
0.01872 |
0.3269 |
bsu09880 |
yhaR |
-10.74 |
0.166509 |
137 -- 152 |
16 -- 29 |
enoyl-CoA hydratase/isomerase YhaR |
|
_____________136______________153\n_____________|________________|\n5'-CAG...UUUAU_______UG_______AUGUA...AAU-3'\n______________UUGGGGA__GCGGGGA\n______________|||||||__:|:|:||\n______________AACCCCU__UGUCUCU\n3'-UUU...UCCCC________________CAUCG...AUA-5'\n_____________|________________|\n_____________30_______________15\n |
146 -- 152 |
16 -- 22 |
-19.1675 kcal/mol |
2.41685 kcal/mol |
6.01276 kcal/mol |
136 153@LB@ | |@LB@5'-CAG...UUUAU UG AUGUA...AAU-3'@LB@ UUGGGGA GCGGGGA@LB@ ||||||| :|:|:||@LB@ AACCCCU UGUCUCU@LB@3'-UUU...UCCCC CAUCG...AUA-5'@LB@ | |@LB@ 30 15@LB@@LB@@LB@Energy -10.74 kcal/mol@LB@Hybridization Energy -19.1675 kcal/mol@LB@Unfolding Energy - mRNA 2.41685 kcal/mol@LB@Unfolding Energy - sRNA 6.01276 kcal/mol@LB@@LB@Position - mRNA 137 -- 152@LB@Position - sRNA 16 -- 29@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 16 -- 22@LB@ |
187 |
0.01872 |
0.3269 |
bsu10530 |
ntdC |
-12.62 |
0.082941 |
177 -- 192 |
32 -- 53 |
NTD biosynthesis operon putative oxidoreductase NtdC |
|
_____________176____________________193\n_____________|______________________|\n5'-CCU...AUUAA_______A______________AAAUA...ACA-3'\n______________UUGGAUC_UGA______GGAGG\n______________|:|||||_|||______:||||\n______________AGCCUAG_ACU______UCUCC\n3'-UUU...AAAAA_______A___AGACUA_____CCAAC...AUA-5'\n_____________|______________________|\n_____________54_____________________31\n |
177 -- 183 |
47 -- 53 |
-16.8717 kcal/mol |
3.27102 kcal/mol |
0.981755 kcal/mol |
176 193@LB@ | |@LB@5'-CCU...AUUAA A AAAUA...ACA-3'@LB@ UUGGAUC UGA GGAGG@LB@ |:||||| ||| :||||@LB@ AGCCUAG ACU UCUCC@LB@3'-UUU...AAAAA A AGACUA CCAAC...AUA-5'@LB@ | |@LB@ 54 31@LB@@LB@@LB@Energy -12.62 kcal/mol@LB@Hybridization Energy -16.8717 kcal/mol@LB@Unfolding Energy - mRNA 3.27102 kcal/mol@LB@Unfolding Energy - sRNA 0.981755 kcal/mol@LB@@LB@Position - mRNA 177 -- 192@LB@Position - sRNA 32 -- 53@LB@Position Seed - mRNA 177 -- 183@LB@Position Seed - sRNA 47 -- 53@LB@ |
188 |
0.01873 |
0.3269 |
bsu10750 |
yisK |
-12.58 |
0.084103 |
165 -- 222 |
21 -- 51 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; Product type pe: enzyme' |
|
_____________164_________________________________________________________223\n_____________|___________________________________________________________|\n5'-UCC...AUGAA___GCAU________UAAAAGA_________AAUAACAUGAAAUUU_C_ACA_______UUUAC...UGU-3'\n______________GGA____UC_UGAUU_______UGAUGGAGG_______________G_G___GGGGAAC\n______________|||____||_||||:_______||||:||||_______________|_|___|||||||\n______________CCU____AG_ACUAG_______ACUAUCUCC_______________C_C___CCCCUUG\n3'-UUU...AAAAG_________A_______________________________________AA________UCUCU...AUA-5'\n_____________|___________________________________________________________|\n_____________52__________________________________________________________20\n |
216 -- 222 |
21 -- 27 |
-23.7404 kcal/mol |
8.38838 kcal/mol |
2.76846 kcal/mol |
164 223@LB@ | |@LB@5'-UCC...AUGAA GCAU UAAAAGA AAUAACAUGAAAUUU C ACA UUUAC...UGU-3'@LB@ GGA UC UGAUU UGAUGGAGG G G GGGGAAC@LB@ ||| || ||||: ||||:|||| | | |||||||@LB@ CCU AG ACUAG ACUAUCUCC C C CCCCUUG@LB@3'-UUU...AAAAG A AA UCUCU...AUA-5'@LB@ | |@LB@ 52 20@LB@@LB@@LB@Energy -12.58 kcal/mol@LB@Hybridization Energy -23.7404 kcal/mol@LB@Unfolding Energy - mRNA 8.38838 kcal/mol@LB@Unfolding Energy - sRNA 2.76846 kcal/mol@LB@@LB@Position - mRNA 165 -- 222@LB@Position - sRNA 21 -- 51@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 21 -- 27@LB@ |
189 |
0.01911 |
0.3269 |
bsu24290 |
xseB |
-12.91 |
0.073825 |
187 -- 193 |
30 -- 36 |
exodeoxyribonuclease 7 small subunit |
|
_____________186_____194\n_____________|_______|\n5'-CAU...AAAAG_______AAGAA...UAG-3'\n______________AGAGGGG\n______________|||||||\n______________UCUCCCC\n3'-UUU...GACUA_______AACCC...AUA-5'\n_____________|_______|\n_____________37______29\n |
187 -- 193 |
30 -- 36 |
-14.0184 kcal/mol |
0.973532 kcal/mol |
0.133643 kcal/mol |
186 194@LB@ | |@LB@5'-CAU...AAAAG AAGAA...UAG-3'@LB@ AGAGGGG@LB@ |||||||@LB@ UCUCCCC@LB@3'-UUU...GACUA AACCC...AUA-5'@LB@ | |@LB@ 37 29@LB@@LB@@LB@Energy -12.91 kcal/mol@LB@Hybridization Energy -14.0184 kcal/mol@LB@Unfolding Energy - mRNA 0.973532 kcal/mol@LB@Unfolding Energy - sRNA 0.133643 kcal/mol@LB@@LB@Position - mRNA 187 -- 193@LB@Position - sRNA 30 -- 36@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 30 -- 36@LB@ |
190 |
0.01911 |
0.3269 |
bsu05370 |
ydfD |
-12.16 |
0.099313 |
269 -- 294 |
11 -- 36 |
GntR family transcriptional regulator |
bsu10880 |
_____________268________________________295\n_____________|__________________________|\n5'-AAA...AUUAA____AAAAUA__A_____________CGAUUG-3'\n______________AGAG______GG_AAUGGAGAGUGGC\n______________||||______||_||::||||||:||\n______________UCUC______CC_UUGUCUCUCAUCG\n3'-UUU...GACUA____CCCAAC__C_____________AAGAG...AUA-5'\n_____________|__________________________|\n_____________37_________________________10\n |
288 -- 294 |
11 -- 17 |
-24.9379 kcal/mol |
3.68177 kcal/mol |
9.10067 kcal/mol |
268 295@LB@ | |@LB@5'-AAA...AUUAA AAAAUA A CGAUUG-3'@LB@ AGAG GG AAUGGAGAGUGGC@LB@ |||| || ||::||||||:||@LB@ UCUC CC UUGUCUCUCAUCG@LB@3'-UUU...GACUA CCCAAC C AAGAG...AUA-5'@LB@ | |@LB@ 37 10@LB@@LB@@LB@Energy -12.16 kcal/mol@LB@Hybridization Energy -24.9379 kcal/mol@LB@Unfolding Energy - mRNA 3.68177 kcal/mol@LB@Unfolding Energy - sRNA 9.10067 kcal/mol@LB@@LB@Position - mRNA 269 -- 294@LB@Position - sRNA 11 -- 36@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 11 -- 17@LB@ |