161 |
0.01452 |
0.3008 |
bsu04700 |
rsbU |
-15.42 |
0.024826 |
142 -- 163 |
16 -- 38 |
phosphoserine phosphatase RsbU |
|
_____________141_____________________164\n_____________|_______________________|\n5'-CUG...AUUCC____C____GAA___________UACAA...UCA-3'\n______________GUAG_GGGG____GGAACAGAGA\n______________:|||_||||____||||||||||\n______________UAUC_CCCC____CCUUGUCUCU\n3'-UUU...UAGAC____U____AACC__________CAUCG...AUA-5'\n_____________|_______________________|\n_____________39______________________15\n |
157 -- 163 |
16 -- 22 |
-28.36 kcal/mol |
3.46196 kcal/mol |
9.47701 kcal/mol |
141 164@LB@ | |@LB@5'-CUG...AUUCC C GAA UACAA...UCA-3'@LB@ GUAG GGGG GGAACAGAGA@LB@ :||| |||| ||||||||||@LB@ UAUC CCCC CCUUGUCUCU@LB@3'-UUU...UAGAC U AACC CAUCG...AUA-5'@LB@ | |@LB@ 39 15@LB@@LB@@LB@Energy -15.42 kcal/mol@LB@Hybridization Energy -28.36 kcal/mol@LB@Unfolding Energy - mRNA 3.46196 kcal/mol@LB@Unfolding Energy - sRNA 9.47701 kcal/mol@LB@@LB@Position - mRNA 142 -- 163@LB@Position - sRNA 16 -- 38@LB@Position Seed - mRNA 157 -- 163@LB@Position Seed - sRNA 16 -- 22@LB@ |
162 |
0.01461 |
0.3008 |
bsu28700 |
ysfE |
-18.20 |
0.006050 |
31 -- 59 |
26 -- 51 |
Evidence 5: No homology to any previously reported sequences |
bsu26940 |
_____________30____________________________60\n_____________|_____________________________|\n5'-AAG...UAGAA___CUA____AAA__CUG___________CAAUG...AAA-3'\n______________GGA___UUGA___UG___AGAGGGGUUGG\n______________|||___||||___||___|||||||||||\n______________CCU___AACU___AC___UCUCCCCAACC\n3'-UUU...AAAAG___AG_____AG___UA____________CCUUG...AUA-5'\n_____________|_____________________________|\n_____________52____________________________25\n |
53 -- 59 |
26 -- 32 |
-27.3955 kcal/mol |
8.22133 kcal/mol |
0.975822 kcal/mol |
30 60@LB@ | |@LB@5'-AAG...UAGAA CUA AAA CUG CAAUG...AAA-3'@LB@ GGA UUGA UG AGAGGGGUUGG@LB@ ||| |||| || |||||||||||@LB@ CCU AACU AC UCUCCCCAACC@LB@3'-UUU...AAAAG AG AG UA CCUUG...AUA-5'@LB@ | |@LB@ 52 25@LB@@LB@@LB@Energy -18.20 kcal/mol@LB@Hybridization Energy -27.3955 kcal/mol@LB@Unfolding Energy - mRNA 8.22133 kcal/mol@LB@Unfolding Energy - sRNA 0.975822 kcal/mol@LB@@LB@Position - mRNA 31 -- 59@LB@Position - sRNA 26 -- 51@LB@Position Seed - mRNA 53 -- 59@LB@Position Seed - sRNA 26 -- 32@LB@ |
163 |
0.01533 |
0.3122 |
bsu19639 |
yoyE |
-15.95 |
0.019304 |
185 -- 198 |
25 -- 39 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________184_____________199\n_____________|_______________|\n5'-UCA...CGCAG__A____________ACAUG...AAU-3'\n______________GA_GGAGGGGU_GGG\n______________||_:|||||||_|||\n______________CU_UCUCCCCA_CCC\n3'-UUU...CUAGA__A________A___CUUGU...AUA-5'\n_____________|_______________|\n_____________40______________24\n |
189 -- 195 |
29 -- 35 |
-22.4813 kcal/mol |
5.74668 kcal/mol |
0.783603 kcal/mol |
184 199@LB@ | |@LB@5'-UCA...CGCAG A ACAUG...AAU-3'@LB@ GA GGAGGGGU GGG@LB@ || :||||||| |||@LB@ CU UCUCCCCA CCC@LB@3'-UUU...CUAGA A A CUUGU...AUA-5'@LB@ | |@LB@ 40 24@LB@@LB@@LB@Energy -15.95 kcal/mol@LB@Hybridization Energy -22.4813 kcal/mol@LB@Unfolding Energy - mRNA 5.74668 kcal/mol@LB@Unfolding Energy - sRNA 0.783603 kcal/mol@LB@@LB@Position - mRNA 185 -- 198@LB@Position - sRNA 25 -- 39@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 29 -- 35@LB@ |
164 |
0.01535 |
0.3122 |
bsu39720 |
iolE |
-13.03 |
0.070250 |
182 -- 189 |
30 -- 37 |
inosose dehydratase |
|
_____________181______190\n_____________|________|\n5'-GUU...AGUAU________AGGCA...UAA-3'\n______________UAGAGGGG\n______________||||||||\n______________AUCUCCCC\n3'-UUU...AGACU________AACCC...AUA-5'\n_____________|________|\n_____________38_______29\n |
183 -- 189 |
30 -- 36 |
-14.5397 kcal/mol |
1.33978 kcal/mol |
0.165704 kcal/mol |
181 190@LB@ | |@LB@5'-GUU...AGUAU AGGCA...UAA-3'@LB@ UAGAGGGG@LB@ ||||||||@LB@ AUCUCCCC@LB@3'-UUU...AGACU AACCC...AUA-5'@LB@ | |@LB@ 38 29@LB@@LB@@LB@Energy -13.03 kcal/mol@LB@Hybridization Energy -14.5397 kcal/mol@LB@Unfolding Energy - mRNA 1.33978 kcal/mol@LB@Unfolding Energy - sRNA 0.165704 kcal/mol@LB@@LB@Position - mRNA 182 -- 189@LB@Position - sRNA 30 -- 37@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 30 -- 36@LB@ |
165 |
0.01546 |
0.3127 |
bsu02230 |
purT |
-12.11 |
0.100898 |
185 -- 195 |
30 -- 39 |
phosphoribosylglycinamide formyltransferase |
|
_____________184_________196\n_____________|___________|\n5'-GAU...GAACA___A_______CAAAG...UUG-3'\n______________GAU_GGAGGGG\n______________|||_:||||||\n______________CUA_UCUCCCC\n3'-UUU...CUAGA___________AACCC...AUA-5'\n_____________|___________|\n_____________40__________29\n |
189 -- 195 |
30 -- 36 |
-15.5568 kcal/mol |
2.66346 kcal/mol |
0.779184 kcal/mol |
184 196@LB@ | |@LB@5'-GAU...GAACA A CAAAG...UUG-3'@LB@ GAU GGAGGGG@LB@ ||| :||||||@LB@ CUA UCUCCCC@LB@3'-UUU...CUAGA AACCC...AUA-5'@LB@ | |@LB@ 40 29@LB@@LB@@LB@Energy -12.11 kcal/mol@LB@Hybridization Energy -15.5568 kcal/mol@LB@Unfolding Energy - mRNA 2.66346 kcal/mol@LB@Unfolding Energy - sRNA 0.779184 kcal/mol@LB@@LB@Position - mRNA 185 -- 195@LB@Position - sRNA 30 -- 39@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 30 -- 36@LB@ |
166 |
0.01583 |
0.3152 |
bsu38190 |
galT |
-8.42 |
0.343831 |
170 -- 181 |
16 -- 26 |
galactose-1-phosphate uridylyltransferase |
|
_____________169__________182\n_____________|____________|\n5'-GGG...GGAGA_______A____ACUAA...AUG-3'\n______________GGGAGCG_GAGA\n______________||||:|:_||||\n______________CCCUUGU_CUCU\n3'-UUU...CCAAC____________CAUCG...AUA-5'\n_____________|____________|\n_____________27___________15\n |
170 -- 176 |
20 -- 26 |
-15.5563 kcal/mol |
1.12924 kcal/mol |
6.00672 kcal/mol |
169 182@LB@ | |@LB@5'-GGG...GGAGA A ACUAA...AUG-3'@LB@ GGGAGCG GAGA@LB@ ||||:|: ||||@LB@ CCCUUGU CUCU@LB@3'-UUU...CCAAC CAUCG...AUA-5'@LB@ | |@LB@ 27 15@LB@@LB@@LB@Energy -8.42 kcal/mol@LB@Hybridization Energy -15.5563 kcal/mol@LB@Unfolding Energy - mRNA 1.12924 kcal/mol@LB@Unfolding Energy - sRNA 6.00672 kcal/mol@LB@@LB@Position - mRNA 170 -- 181@LB@Position - sRNA 16 -- 26@LB@Position Seed - mRNA 170 -- 176@LB@Position Seed - sRNA 20 -- 26@LB@ |
167 |
0.01619 |
0.3152 |
bsu31500 |
yuxK |
-13.98 |
0.047449 |
182 -- 199 |
26 -- 51 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________181__________________________200\n_____________|____________________________|\n5'-UAC...UUAAA______________________AUA___AGUGA...ACG-3'\n______________GGAUC__________GGAGGGG___UGG\n______________|||||__________:||||||___|||\n______________CCUAG__________UCUCCCC___ACC\n3'-UUU...AAAAG_____AACUAGACUA_______A_____CCUUG...AUA-5'\n_____________|____________________________|\n_____________52___________________________25\n |
187 -- 193 |
30 -- 36 |
-20.9361 kcal/mol |
5.98517 kcal/mol |
0.975822 kcal/mol |
181 200@LB@ | |@LB@5'-UAC...UUAAA AUA AGUGA...ACG-3'@LB@ GGAUC GGAGGGG UGG@LB@ ||||| :|||||| |||@LB@ CCUAG UCUCCCC ACC@LB@3'-UUU...AAAAG AACUAGACUA A CCUUG...AUA-5'@LB@ | |@LB@ 52 25@LB@@LB@@LB@Energy -13.98 kcal/mol@LB@Hybridization Energy -20.9361 kcal/mol@LB@Unfolding Energy - mRNA 5.98517 kcal/mol@LB@Unfolding Energy - sRNA 0.975822 kcal/mol@LB@@LB@Position - mRNA 182 -- 199@LB@Position - sRNA 26 -- 51@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 30 -- 36@LB@ |
168 |
0.01631 |
0.3152 |
bsu14170 |
ykuP |
-12.43 |
0.089417 |
80 -- 100 |
11 -- 27 |
flavodoxin-2 |
|
_____________79____________________101\n_____________|_____________________|\n5'-CAC...AUUAA___ACAU______________CAAUC...UAG-3'\n______________GGG____GGAUGGAGAGUGGC\n______________|||____|:|::||||||:||\n______________CCC____CUUGUCUCUCAUCG\n3'-UUU...CCCAA_____________________AAGAG...AUA-5'\n_____________|_____________________|\n_____________28____________________10\n |
94 -- 100 |
11 -- 17 |
-24.7716 kcal/mol |
6.31596 kcal/mol |
6.0284 kcal/mol |
79 101@LB@ | |@LB@5'-CAC...AUUAA ACAU CAAUC...UAG-3'@LB@ GGG GGAUGGAGAGUGGC@LB@ ||| |:|::||||||:||@LB@ CCC CUUGUCUCUCAUCG@LB@3'-UUU...CCCAA AAGAG...AUA-5'@LB@ | |@LB@ 28 10@LB@@LB@@LB@Energy -12.43 kcal/mol@LB@Hybridization Energy -24.7716 kcal/mol@LB@Unfolding Energy - mRNA 6.31596 kcal/mol@LB@Unfolding Energy - sRNA 6.0284 kcal/mol@LB@@LB@Position - mRNA 80 -- 100@LB@Position - sRNA 11 -- 27@LB@Position Seed - mRNA 94 -- 100@LB@Position Seed - sRNA 11 -- 17@LB@ |
169 |
0.01639 |
0.3152 |
bsu07850 |
yfkM |
-11.33 |
0.135062 |
186 -- 208 |
22 -- 34 |
general stress protein 18 |
|
_____________185_____________________209\n_____________|_______________________|\n5'-UGU...AAAGC___A___UAUGAAUCA_______AAAAA...CUG-3'\n______________GGG_GGU_________UGGGGAA\n______________:||_|||_________|||||||\n______________UCC_CCA_________ACCCCUU\n3'-UUU...CUAUC_______________________GUCUC...AUA-5'\n_____________|_______________________|\n_____________35______________________21\n |
202 -- 208 |
22 -- 28 |
-15.0114 kcal/mol |
2.66027 kcal/mol |
1.02154 kcal/mol |
185 209@LB@ | |@LB@5'-UGU...AAAGC A UAUGAAUCA AAAAA...CUG-3'@LB@ GGG GGU UGGGGAA@LB@ :|| ||| |||||||@LB@ UCC CCA ACCCCUU@LB@3'-UUU...CUAUC GUCUC...AUA-5'@LB@ | |@LB@ 35 21@LB@@LB@@LB@Energy -11.33 kcal/mol@LB@Hybridization Energy -15.0114 kcal/mol@LB@Unfolding Energy - mRNA 2.66027 kcal/mol@LB@Unfolding Energy - sRNA 1.02154 kcal/mol@LB@@LB@Position - mRNA 186 -- 208@LB@Position - sRNA 22 -- 34@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 22 -- 28@LB@ |
170 |
0.0164 |
0.3152 |
bsu13090 |
ykkC |
-8.27 |
0.358617 |
162 -- 212 |
23 -- 55 |
multidrug resistance protein |
|
_____________161__________________________________________________213\n_____________|____________________________________________________|\n5'-UCA...UUUGU_______GAA____A__A_______AA__AAUGACUCAAAAU_AAA______UUGGU...CCA-3'\n______________UUUCGGA___UCUU_AU__GAUAGA__GG_____________G___UGGGGA\n______________|||||||___||||_||__||||||__||_____________|___||||||\n______________AAAGCCU___AGAA_UA__CUAUCU__CC_____________C___ACCCCU\n3'-UUU...UCAAA______________C__GA______C_________________A________UGUCU...AUA-5'\n_____________|____________________________________________________|\n_____________56___________________________________________________22\n |
162 -- 168 |
49 -- 55 |
-21.902 kcal/mol |
11.1231 kcal/mol |
2.51158 kcal/mol |
161 213@LB@ | |@LB@5'-UCA...UUUGU GAA A A AA AAUGACUCAAAAU AAA UUGGU...CCA-3'@LB@ UUUCGGA UCUU AU GAUAGA GG G UGGGGA@LB@ ||||||| |||| || |||||| || | ||||||@LB@ AAAGCCU AGAA UA CUAUCU CC C ACCCCU@LB@3'-UUU...UCAAA C GA C A UGUCU...AUA-5'@LB@ | |@LB@ 56 22@LB@@LB@@LB@Energy -8.27 kcal/mol@LB@Hybridization Energy -21.902 kcal/mol@LB@Unfolding Energy - mRNA 11.1231 kcal/mol@LB@Unfolding Energy - sRNA 2.51158 kcal/mol@LB@@LB@Position - mRNA 162 -- 212@LB@Position - sRNA 23 -- 55@LB@Position Seed - mRNA 162 -- 168@LB@Position Seed - sRNA 49 -- 55@LB@ |