| 52 |
0.003856 |
0.237 |
b2844 |
yqeF |
-12.45 |
0.034706 |
43 -- 109 |
1 -- 67 |
short chain acyltransferase |
|
_____________42______________________________________________________________________110\n_____________|_______________________________________________________________________|\n5'-CCA...CUCUA____U__________________A_____U___U_CC___UAU____C____UGCUGCUC________UU_CUUUG...UCG-3'\n______________UUGG_GGGUUAGUGGU__UGCAA___CCU_ACG_G__AGU___GUCU_UGAC________AGGCAUAU__C\n______________||||_:::|:|||||:__|||||___||:_||:_|__|:|___:|||_||||________||||||||__|\n______________AACC_UUUAGUCACCG__ACGUU___GGG_UGU_C__UUA___UAGA_ACUG________UCCGUAUA__G\n3'-UUU...UAUAC____U___________UU_____ACC___U_____UU___UUU____C____UUAUU___________UU_-5'\n_____________|______________________________________________________________________|\n_____________68_____________________________________________________________________1\n |
100 -- 106 |
4 -- 10 |
-44.1841 kcal/mol |
19.5714 kcal/mol |
12.1612 kcal/mol |
42 110@LB@ | |@LB@5'-CCA...CUCUA U A U U CC UAU C UGCUGCUC UU CUUUG...UCG-3'@LB@ UUGG GGGUUAGUGGU UGCAA CCU ACG G AGU GUCU UGAC AGGCAUAU C@LB@ |||| :::|:|||||: ||||| ||: ||: | |:| :||| |||| |||||||| |@LB@ AACC UUUAGUCACCG ACGUU GGG UGU C UUA UAGA ACUG UCCGUAUA G@LB@3'-UUU...UAUAC U UU ACC U UU UUU C UUAUU UU -5'@LB@ | |@LB@ 68 1@LB@@LB@@LB@Energy -12.45 kcal/mol@LB@Hybridization Energy -44.1841 kcal/mol@LB@Unfolding Energy - mRNA 19.5714 kcal/mol@LB@Unfolding Energy - sRNA 12.1612 kcal/mol@LB@@LB@Position - mRNA 43 -- 109@LB@Position - sRNA 1 -- 67@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 4 -- 10@LB@ |
| 109 |
0.01013 |
0.3127 |
b3805 |
hemC |
-12.29 |
0.037947 |
146 -- 209 |
1 -- 60 |
hydroxymethylbilane synthase |
|
_____________145_____________________________________________________________________210\n_____________|_______________________________________________________________________|\n5'-AAA...CUGAC____CUC_____AGG____UAG_____A________U____________________CAA______UA___AAUGU...GCC-3'\n______________AUCA___UGGCA___AUGU___GAUGG_CC_ACGGA_GAUAA______UGACGGUAA___GCAUGU__GAC\n______________||||___|||||___|||:___:||||_||_||:||_:||||______||||::|||___||||:|__:||\n______________UAGU___ACCGU___UACG___UUACC_GG_UGUCU_UUAUU______ACUGUUAUU___CGUAUA__UUG\n3'-UUU...CCUUU____C______________________G__U_____U_____UUAGAC_________UC____________-5'\n_____________|______________________________________________________________________|\n_____________61_____________________________________________________________________1\n |
189 -- 195 |
12 -- 18 |
-39.6606 kcal/mol |
15.2176 kcal/mol |
12.1554 kcal/mol |
145 210@LB@ | |@LB@5'-AAA...CUGAC CUC AGG UAG A U CAA UA AAUGU...GCC-3'@LB@ AUCA UGGCA AUGU GAUGG CC ACGGA GAUAA UGACGGUAA GCAUGU GAC@LB@ |||| ||||| |||: :|||| || ||:|| :|||| ||||::||| ||||:| :||@LB@ UAGU ACCGU UACG UUACC GG UGUCU UUAUU ACUGUUAUU CGUAUA UUG@LB@3'-UUU...CCUUU C G U U UUAGAC UC -5'@LB@ | |@LB@ 61 1@LB@@LB@@LB@Energy -12.29 kcal/mol@LB@Hybridization Energy -39.6606 kcal/mol@LB@Unfolding Energy - mRNA 15.2176 kcal/mol@LB@Unfolding Energy - sRNA 12.1554 kcal/mol@LB@@LB@Position - mRNA 146 -- 209@LB@Position - sRNA 1 -- 60@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 56 |
0.003989 |
0.237 |
b0453 |
ybaY |
-12.27 |
0.038324 |
59 -- 73 |
39 -- 55 |
outer membrane lipoprotein |
|
_____________58________________74\n_____________|_________________|\n5'-AAG...UCCGA_________________GAAUU...CAA-3'\n______________UGG__GUGCAAUGGUCU\n______________|||__:||||||||:|:\n______________ACC__UACGUUACCGGG\n3'-UUU...UAGUC___GU____________UUGUC...UUG-5'\n_____________|_________________|\n_____________56________________38\n |
67 -- 73 |
39 -- 45 |
-20.8095 kcal/mol |
3.77686 kcal/mol |
4.76312 kcal/mol |
58 74@LB@ | |@LB@5'-AAG...UCCGA GAAUU...CAA-3'@LB@ UGG GUGCAAUGGUCU@LB@ ||| :||||||||:|:@LB@ ACC UACGUUACCGGG@LB@3'-UUU...UAGUC GU UUGUC...UUG-5'@LB@ | |@LB@ 56 38@LB@@LB@@LB@Energy -12.27 kcal/mol@LB@Hybridization Energy -20.8095 kcal/mol@LB@Unfolding Energy - mRNA 3.77686 kcal/mol@LB@Unfolding Energy - sRNA 4.76312 kcal/mol@LB@@LB@Position - mRNA 59 -- 73@LB@Position - sRNA 39 -- 55@LB@Position Seed - mRNA 67 -- 73@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 58 |
0.004088 |
0.237 |
b0998 |
torD |
-12.26 |
0.038501 |
93 -- 144 |
1 -- 57 |
TorA-maturation chaperone |
|
_____________92__________________________________________________________145\n_____________|___________________________________________________________|\n5'-GGU...ACGCU_____AAAU__AGAA___A________C_______CAG________________U____GGCCC...CCA-3'\n______________GGUGG____UG_____GU_CAACGGAA_AGUGGAG___GUGAC______GGCGU_UAAC\n______________:||||____||_____|:_||||:|||_|:|::|:___|||||______|||:|_||||\n______________UCACC____AC_____CG_GUUGUCUU_UUAUUUU___CACUG______CCGUA_AUUG\n3'-UUU...UUUAG_____GUU___GUUAC__G________________AGA_____UUAUUU_____U____-5'\n_____________|__________________________________________________________|\n_____________58_________________________________________________________1\n |
111 -- 117 |
33 -- 39 |
-35.8821 kcal/mol |
11.4978 kcal/mol |
12.1233 kcal/mol |
92 145@LB@ | |@LB@5'-GGU...ACGCU AAAU AGAA A C CAG U GGCCC...CCA-3'@LB@ GGUGG UG GU CAACGGAA AGUGGAG GUGAC GGCGU UAAC@LB@ :|||| || |: ||||:||| |:|::|: ||||| |||:| ||||@LB@ UCACC AC CG GUUGUCUU UUAUUUU CACUG CCGUA AUUG@LB@3'-UUU...UUUAG GUU GUUAC G AGA UUAUUU U -5'@LB@ | |@LB@ 58 1@LB@@LB@@LB@Energy -12.26 kcal/mol@LB@Hybridization Energy -35.8821 kcal/mol@LB@Unfolding Energy - mRNA 11.4978 kcal/mol@LB@Unfolding Energy - sRNA 12.1233 kcal/mol@LB@@LB@Position - mRNA 93 -- 144@LB@Position - sRNA 1 -- 57@LB@Position Seed - mRNA 111 -- 117@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 90 |
0.007755 |
0.2889 |
b1852 |
zwf |
-12.23 |
0.039232 |
191 -- 223 |
38 -- 65 |
glucose-6-phosphate 1-dehydrogenase |
|
_____________190_______________________________224\n_____________|_________________________________|\n5'-UCA...CUUAA_______G_CA_______AAC____ACA_____GGCCU...UGG-3'\n______________GGAGAAU_A__UGGCGGU___GCAA___GCCCA\n______________|||:|||_|__||||::|___||||___|||||\n______________CCUUUUA_U__ACCGUUA___CGUU___CGGGU\n3'-UUU...UACAA_______G_C_______________AC______UGUCU...UUG-5'\n_____________|_________________________________|\n_____________66________________________________37\n |
202 -- 208 |
49 -- 55 |
-27.1425 kcal/mol |
8.24293 kcal/mol |
6.67322 kcal/mol |
190 224@LB@ | |@LB@5'-UCA...CUUAA G CA AAC ACA GGCCU...UGG-3'@LB@ GGAGAAU A UGGCGGU GCAA GCCCA@LB@ |||:||| | ||||::| |||| |||||@LB@ CCUUUUA U ACCGUUA CGUU CGGGU@LB@3'-UUU...UACAA G C AC UGUCU...UUG-5'@LB@ | |@LB@ 66 37@LB@@LB@@LB@Energy -12.23 kcal/mol@LB@Hybridization Energy -27.1425 kcal/mol@LB@Unfolding Energy - mRNA 8.24293 kcal/mol@LB@Unfolding Energy - sRNA 6.67322 kcal/mol@LB@@LB@Position - mRNA 191 -- 223@LB@Position - sRNA 38 -- 65@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 41 |
0.002667 |
0.2088 |
b2475 |
ypfJ |
-12.17 |
0.040379 |
232 -- 266 |
38 -- 70 |
putative neutral zinc metallopeptidase |
|
_____________231___________________________________267\n_____________|_____________________________________|\n5'-GUC...UGACA_______________GC____CA__UCU_________UCUAU...GCG-3'\n______________AUGUU_GAAGA_CAG__GCAA__GC___GGUGGUCCA\n______________|||||_|||:|_|||__||||__||___::|||:|||\n______________UACAA_CUUUU_GUC__CGUU__CG___UUACCGGGU\n3'-UUU...AAAUA_____C_____A___AC____A_______________UGUCU...UUG-5'\n_____________|_____________________________________|\n_____________71____________________________________37\n |
260 -- 266 |
38 -- 44 |
-27.4905 kcal/mol |
8.02084 kcal/mol |
7.29667 kcal/mol |
231 267@LB@ | |@LB@5'-GUC...UGACA GC CA UCU UCUAU...GCG-3'@LB@ AUGUU GAAGA CAG GCAA GC GGUGGUCCA@LB@ ||||| |||:| ||| |||| || ::|||:|||@LB@ UACAA CUUUU GUC CGUU CG UUACCGGGU@LB@3'-UUU...AAAUA C A AC A UGUCU...UUG-5'@LB@ | |@LB@ 71 37@LB@@LB@@LB@Energy -12.17 kcal/mol@LB@Hybridization Energy -27.4905 kcal/mol@LB@Unfolding Energy - mRNA 8.02084 kcal/mol@LB@Unfolding Energy - sRNA 7.29667 kcal/mol@LB@@LB@Position - mRNA 232 -- 266@LB@Position - sRNA 38 -- 70@LB@Position Seed - mRNA 260 -- 266@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 16 |
0.0007379 |
0.1438 |
b3838 |
tatB |
-12.16 |
0.040760 |
131 -- 190 |
7 -- 68 |
TatABCE protein translocation system subunit |
|
_____________130___________________________________________________________________191\n_____________|_____________________________________________________________________|\n5'-UCG...AAGCA_GC___UAC_______GAA_____________AA_________CGC______GCC__________A___GGUGU...CGG-3'\n______________G__GGA___GAAUCAG___CA_______GGCU__AACAGAAGA___GAAG_C____ACGAUAAAG_GCA\n______________|__|||___:||||||___||_______|||:__|||||||:|___:||:_|____||:||||||_|||\n______________C__CCU___UUUAGUC___GU_______CCGG__UUGUCUUUU___UUUU_G____UGUUAUUUC_CGU\n3'-UUU...AUAUA_AA_____________ACC__UACGUUA____G__________A______A_ACAC_____________AUAUUG-5'\n_____________|_____________________________________________________________________|\n_____________69____________________________________________________________________6\n |
180 -- 186 |
10 -- 16 |
-35.021 kcal/mol |
10.7079 kcal/mol |
12.1575 kcal/mol |
130 191@LB@ | |@LB@5'-UCG...AAGCA GC UAC GAA AA CGC GCC A GGUGU...CGG-3'@LB@ G GGA GAAUCAG CA GGCU AACAGAAGA GAAG C ACGAUAAAG GCA@LB@ | ||| :|||||| || |||: |||||||:| :||: | ||:|||||| |||@LB@ C CCU UUUAGUC GU CCGG UUGUCUUUU UUUU G UGUUAUUUC CGU@LB@3'-UUU...AUAUA AA ACC UACGUUA G A A ACAC AUAUUG-5'@LB@ | |@LB@ 69 6@LB@@LB@@LB@Energy -12.16 kcal/mol@LB@Hybridization Energy -35.021 kcal/mol@LB@Unfolding Energy - mRNA 10.7079 kcal/mol@LB@Unfolding Energy - sRNA 12.1575 kcal/mol@LB@@LB@Position - mRNA 131 -- 190@LB@Position - sRNA 7 -- 68@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 158 |
0.01805 |
0.3828 |
b0159 |
mtn |
-12.15 |
0.040782 |
203 -- 232 |
30 -- 64 |
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase |
|
_____________202_________________________________233\n_____________|___________________________________|\n5'-GAU...UCUAU______________U____U____G__________AGAAG...UCU-3'\n______________GAAAAUC___GGCA___CA_UGGU_CAAUGGAAGA\n______________|||||||___||||___||_|||:_|||::|||:|\n______________CUUUUAG___CCGU___GU_ACCG_GUUGUCUUUU\n3'-UUU...ACAAC_______UCA____UAC__U____G__________AUUUU...UUG-5'\n_____________|___________________________________|\n_____________65__________________________________29\n |
203 -- 209 |
58 -- 64 |
-29.7028 kcal/mol |
6.58654 kcal/mol |
10.9617 kcal/mol |
202 233@LB@ | |@LB@5'-GAU...UCUAU U U G AGAAG...UCU-3'@LB@ GAAAAUC GGCA CA UGGU CAAUGGAAGA@LB@ ||||||| |||| || |||: |||::|||:|@LB@ CUUUUAG CCGU GU ACCG GUUGUCUUUU@LB@3'-UUU...ACAAC UCA UAC U G AUUUU...UUG-5'@LB@ | |@LB@ 65 29@LB@@LB@@LB@Energy -12.15 kcal/mol@LB@Hybridization Energy -29.7028 kcal/mol@LB@Unfolding Energy - mRNA 6.58654 kcal/mol@LB@Unfolding Energy - sRNA 10.9617 kcal/mol@LB@@LB@Position - mRNA 203 -- 232@LB@Position - sRNA 30 -- 64@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 58 -- 64@LB@ |
| 142 |
0.01646 |
0.3828 |
b2248 |
rhmR |
-12.12 |
0.041559 |
199 -- 228 |
39 -- 72 |
putative DNA-binding transcriptional regulator for the rhm operon |
b4299 |
_____________198________________________________229\n_____________|__________________________________|\n5'-UUU...GUCCA________________A______A__UCCC____UGACA...ACA-3'\n______________GUAUGUUGGA__AUCA___GCAA_GU____GCCC\n______________:|||||||||__||||___||||_|:____||||\n______________UAUACAACCU__UAGU___CGUU_CG____CGGG\n3'-UUU...AAAAA__________UU____CAC____A__UUAC____UUGUC...UUG-5'\n_____________|__________________________________|\n_____________73_________________________________38\n |
202 -- 208 |
63 -- 69 |
-27.9384 kcal/mol |
8.52428 kcal/mol |
7.29447 kcal/mol |
198 229@LB@ | |@LB@5'-UUU...GUCCA A A UCCC UGACA...ACA-3'@LB@ GUAUGUUGGA AUCA GCAA GU GCCC@LB@ :||||||||| |||| |||| |: ||||@LB@ UAUACAACCU UAGU CGUU CG CGGG@LB@3'-UUU...AAAAA UU CAC A UUAC UUGUC...UUG-5'@LB@ | |@LB@ 73 38@LB@@LB@@LB@Energy -12.12 kcal/mol@LB@Hybridization Energy -27.9384 kcal/mol@LB@Unfolding Energy - mRNA 8.52428 kcal/mol@LB@Unfolding Energy - sRNA 7.29447 kcal/mol@LB@@LB@Position - mRNA 199 -- 228@LB@Position - sRNA 39 -- 72@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 63 -- 69@LB@ |
| 24 |
0.001299 |
0.182 |
b1267 |
yciO |
-12.11 |
0.041783 |
4 -- 24 |
36 -- 58 |
putative RNA binding protein |
|
_____________3_______________________25\n_____________|_______________________|\n________5'-GCG_____C_________C_______GAACG...CAA-3'\n______________CAGUG_CA__GCAAU_GCCCAAU\n______________|||||_||__|||||_||||||:\n______________GUCAC_GU__CGUUA_CGGGUUG\n3'-UUU...UUUUA_____C__UA_____C_______UCUUU...UUG-5'\n_____________|_______________________|\n_____________59______________________35\n |
18 -- 24 |
36 -- 42 |
-24.2706 kcal/mol |
1.86377 kcal/mol |
10.2972 kcal/mol |
3 25@LB@ | |@LB@ 5'-GCG C C GAACG...CAA-3'@LB@ CAGUG CA GCAAU GCCCAAU@LB@ ||||| || ||||| ||||||:@LB@ GUCAC GU CGUUA CGGGUUG@LB@3'-UUU...UUUUA C UA C UCUUU...UUG-5'@LB@ | |@LB@ 59 35@LB@@LB@@LB@Energy -12.11 kcal/mol@LB@Hybridization Energy -24.2706 kcal/mol@LB@Unfolding Energy - mRNA 1.86377 kcal/mol@LB@Unfolding Energy - sRNA 10.2972 kcal/mol@LB@@LB@Position - mRNA 4 -- 24@LB@Position - sRNA 36 -- 58@LB@Position Seed - mRNA 18 -- 24@LB@Position Seed - sRNA 36 -- 42@LB@ |
