| 198 |
0.02539 |
0.4256 |
b1624 |
ydgJ |
-9.27 |
0.170491 |
217 -- 246 |
45 -- 70 |
putative oxidoreductase |
|
_____________216____________________________247\n_____________|______________________________|\n5'-GUA...CAUCC________UU______GUA____U______GCAAA...CGG-3'\n______________GUGUUGGG__GAUUGG___UGGU_AUGCGA\n______________:||||||:__:||::|___|||:_||||:|\n______________UACAACCU__UUAGUC___ACCG_UACGUU\n3'-UUU...AAAUA________U______________U______ACCGG...UUG-5'\n_____________|______________________________|\n_____________71_____________________________44\n |
218 -- 224 |
63 -- 69 |
-23.4852 kcal/mol |
9.77058 kcal/mol |
4.44589 kcal/mol |
216 247@LB@ | |@LB@5'-GUA...CAUCC UU GUA U GCAAA...CGG-3'@LB@ GUGUUGGG GAUUGG UGGU AUGCGA@LB@ :||||||: :||::| |||: ||||:|@LB@ UACAACCU UUAGUC ACCG UACGUU@LB@3'-UUU...AAAUA U U ACCGG...UUG-5'@LB@ | |@LB@ 71 44@LB@@LB@@LB@Energy -9.27 kcal/mol@LB@Hybridization Energy -23.4852 kcal/mol@LB@Unfolding Energy - mRNA 9.77058 kcal/mol@LB@Unfolding Energy - sRNA 4.44589 kcal/mol@LB@@LB@Position - mRNA 217 -- 246@LB@Position - sRNA 45 -- 70@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 63 -- 69@LB@ |
| 28 |
0.001683 |
0.2021 |
b0166 |
dapD |
-9.25 |
0.172213 |
119 -- 166 |
9 -- 65 |
2 3 4 5-tetrahydropyridine-2-carboxylate N-succinyltransferase |
|
_____________118___________________________________________________________167\n_____________|_____________________________________________________________|\n5'-UUG...CAGCA_____UGC_____C_______A___A_____UC______________CAA___________GUGAU...AGG-3'\n______________GGAAG___AUCAG_GGU__UG_CAG_GGCCC____________AAUC____ACGAUAAAGG\n______________||||:___|||||_||:__||_||:_|||||____________||||____||:|||||||\n______________CCUUU___UAGUC_CCG__AC_GUU_CCGGG____________UUAG____UGUUAUUUCC\n3'-UUU...UACAA_____________A___UU______A_____UUGUCUUUUAUU____ACAC__________GUAUAUUG-5'\n_____________|_____________________________________________________________|\n_____________66____________________________________________________________8\n |
160 -- 166 |
9 -- 15 |
-36.4613 kcal/mol |
16.0785 kcal/mol |
11.1365 kcal/mol |
118 167@LB@ | |@LB@5'-UUG...CAGCA UGC C A A UC CAA GUGAU...AGG-3'@LB@ GGAAG AUCAG GGU UG CAG GGCCC AAUC ACGAUAAAGG@LB@ ||||: ||||| ||: || ||: ||||| |||| ||:|||||||@LB@ CCUUU UAGUC CCG AC GUU CCGGG UUAG UGUUAUUUCC@LB@3'-UUU...UACAA A UU A UUGUCUUUUAUU ACAC GUAUAUUG-5'@LB@ | |@LB@ 66 8@LB@@LB@@LB@Energy -9.25 kcal/mol@LB@Hybridization Energy -36.4613 kcal/mol@LB@Unfolding Energy - mRNA 16.0785 kcal/mol@LB@Unfolding Energy - sRNA 11.1365 kcal/mol@LB@@LB@Position - mRNA 119 -- 166@LB@Position - sRNA 9 -- 65@LB@Position Seed - mRNA 160 -- 166@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 168 |
0.01999 |
0.3993 |
b2171 |
yeiP |
-9.24 |
0.172435 |
8 -- 24 |
39 -- 54 |
elongation factor P-like protein |
|
_____________7_________________25\n_____________|_________________|\n____5'-UUGAAGG__________CAC____CGCAA...GCG-3'\n______________GGCAGUGCAA___GCCC\n______________||||:|||||___||||\n______________CCGUUACGUU___CGGG\n3'-UUU...AGUCA__________AC_____UUGUC...UUG-5'\n_____________|_________________|\n_____________55________________38\n |
11 -- 17 |
45 -- 51 |
-22.1688 kcal/mol |
8.16527 kcal/mol |
4.76022 kcal/mol |
7 25@LB@ | |@LB@ 5'-UUGAAGG CAC CGCAA...GCG-3'@LB@ GGCAGUGCAA GCCC@LB@ ||||:||||| ||||@LB@ CCGUUACGUU CGGG@LB@3'-UUU...AGUCA AC UUGUC...UUG-5'@LB@ | |@LB@ 55 38@LB@@LB@@LB@Energy -9.24 kcal/mol@LB@Hybridization Energy -22.1688 kcal/mol@LB@Unfolding Energy - mRNA 8.16527 kcal/mol@LB@Unfolding Energy - sRNA 4.76022 kcal/mol@LB@@LB@Position - mRNA 8 -- 24@LB@Position - sRNA 39 -- 54@LB@Position Seed - mRNA 11 -- 17@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 67 |
0.005347 |
0.2645 |
b4278 |
insG |
-9.22 |
0.173962 |
151 -- 164 |
45 -- 58 |
IS4 transposase |
|
_____________150____________165\n_____________|______________|\n5'-GUU...CGAUC_______U______GAAUC...CUC-3'\n______________CAGUGGC_GUGUAA\n______________|||||||_:||:||\n______________GUCACCG_UACGUU\n3'-UUU...UUUUA_______U______ACCGG...UUG-5'\n_____________|______________|\n_____________59_____________44\n |
151 -- 157 |
52 -- 58 |
-18.8848 kcal/mol |
6.17717 kcal/mol |
3.48403 kcal/mol |
150 165@LB@ | |@LB@5'-GUU...CGAUC U GAAUC...CUC-3'@LB@ CAGUGGC GUGUAA@LB@ ||||||| :||:||@LB@ GUCACCG UACGUU@LB@3'-UUU...UUUUA U ACCGG...UUG-5'@LB@ | |@LB@ 59 44@LB@@LB@@LB@Energy -9.22 kcal/mol@LB@Hybridization Energy -18.8848 kcal/mol@LB@Unfolding Energy - mRNA 6.17717 kcal/mol@LB@Unfolding Energy - sRNA 3.48403 kcal/mol@LB@@LB@Position - mRNA 151 -- 164@LB@Position - sRNA 45 -- 58@LB@Position Seed - mRNA 151 -- 157@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 134 |
0.01498 |
0.3759 |
b3388 |
damX |
-9.22 |
0.174550 |
186 -- 204 |
42 -- 59 |
cell division protein that binds to the septal ring |
|
_____________185__________________205\n_____________|____________________|\n5'-GGG...ACCUU_____________UA_____AUGAA...AAC-3'\n______________UUAGUGG_GGUGU__AAUGG\n______________|:|||||_::||:__|||||\n______________AGUCACC_UUACG__UUACC\n3'-UUU...CUUUU_______G____________GGGUU...UUG-5'\n_____________|____________________|\n_____________60___________________41\n |
186 -- 192 |
53 -- 59 |
-16.4488 kcal/mol |
3.53707 kcal/mol |
3.69565 kcal/mol |
185 205@LB@ | |@LB@5'-GGG...ACCUU UA AUGAA...AAC-3'@LB@ UUAGUGG GGUGU AAUGG@LB@ |:||||| ::||: |||||@LB@ AGUCACC UUACG UUACC@LB@3'-UUU...CUUUU G GGGUU...UUG-5'@LB@ | |@LB@ 60 41@LB@@LB@@LB@Energy -9.22 kcal/mol@LB@Hybridization Energy -16.4488 kcal/mol@LB@Unfolding Energy - mRNA 3.53707 kcal/mol@LB@Unfolding Energy - sRNA 3.69565 kcal/mol@LB@@LB@Position - mRNA 186 -- 204@LB@Position - sRNA 42 -- 59@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 118 |
0.01176 |
0.3326 |
b3601 |
mtlR |
-9.20 |
0.175568 |
190 -- 199 |
44 -- 53 |
mannitol operon repressor |
|
_____________189________200\n_____________|__________|\n5'-UAU...AUAAA__________AAUGG...UUG-3'\n______________GCAAUGCAAU\n______________||||||||||\n______________CGUUACGUUA\n3'-UUU...GUCAC__________CCGGG...UUG-5'\n_____________|__________|\n_____________54_________43\n |
193 -- 199 |
44 -- 50 |
-14.2394 kcal/mol |
1.82821 kcal/mol |
3.20822 kcal/mol |
189 200@LB@ | |@LB@5'-UAU...AUAAA AAUGG...UUG-3'@LB@ GCAAUGCAAU@LB@ ||||||||||@LB@ CGUUACGUUA@LB@3'-UUU...GUCAC CCGGG...UUG-5'@LB@ | |@LB@ 54 43@LB@@LB@@LB@Energy -9.20 kcal/mol@LB@Hybridization Energy -14.2394 kcal/mol@LB@Unfolding Energy - mRNA 1.82821 kcal/mol@LB@Unfolding Energy - sRNA 3.20822 kcal/mol@LB@@LB@Position - mRNA 190 -- 199@LB@Position - sRNA 44 -- 53@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 163 |
0.01899 |
0.3918 |
b0037 |
caiC |
-9.20 |
0.176089 |
195 -- 204 |
42 -- 51 |
putative crotonobetaine/carnitine-CoA ligase |
|
_____________194________205\n_____________|__________|\n5'-CGG...AUAGA__________AUAUC...GAG-3'\n______________GGUGCAAUGG\n______________::||||||||\n______________UUACGUUACC\n3'-UUU...CACCG__________GGGUU...UUG-5'\n_____________|__________|\n_____________52_________41\n |
198 -- 204 |
42 -- 48 |
-13.9036 kcal/mol |
2.50026 kcal/mol |
2.20704 kcal/mol |
194 205@LB@ | |@LB@5'-CGG...AUAGA AUAUC...GAG-3'@LB@ GGUGCAAUGG@LB@ ::||||||||@LB@ UUACGUUACC@LB@3'-UUU...CACCG GGGUU...UUG-5'@LB@ | |@LB@ 52 41@LB@@LB@@LB@Energy -9.20 kcal/mol@LB@Hybridization Energy -13.9036 kcal/mol@LB@Unfolding Energy - mRNA 2.50026 kcal/mol@LB@Unfolding Energy - sRNA 2.20704 kcal/mol@LB@@LB@Position - mRNA 195 -- 204@LB@Position - sRNA 42 -- 51@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 128 |
0.01375 |
0.3614 |
b1271 |
yciK |
-9.18 |
0.177475 |
2 -- 35 |
4 -- 52 |
putative EmrKY-TolC system oxoacyl-(acyl carrier protein) reductase |
|
_____________1_________________________________________________36\n_____________|_________________________________________________|\n__________5'-A___C__UU___________UUU________________C__________UAAGC...CAC-3'\n______________CAA_GC__UGGCUC_ACAG_______________ACAA___AGGCAUGU\n______________|||_||__||||:|_||||_______________||||___||||||:|\n______________GUU_CG__ACCGGG_UGUC_______________UGUU___UCCGUAUA\n3'-UUU...UCACC___A__UU______U____UUUUAUUUUAGACAC____AUU________UUG-5'\n_____________|_________________________________________________|\n_____________53________________________________________________3\n |
29 -- 35 |
4 -- 10 |
-28.8633 kcal/mol |
7.6461 kcal/mol |
12.0385 kcal/mol |
1 36@LB@ | |@LB@ 5'-A C UU UUU C UAAGC...CAC-3'@LB@ CAA GC UGGCUC ACAG ACAA AGGCAUGU@LB@ ||| || ||||:| |||| |||| ||||||:|@LB@ GUU CG ACCGGG UGUC UGUU UCCGUAUA@LB@3'-UUU...UCACC A UU U UUUUAUUUUAGACAC AUU UUG-5'@LB@ | |@LB@ 53 3@LB@@LB@@LB@Energy -9.18 kcal/mol@LB@Hybridization Energy -28.8633 kcal/mol@LB@Unfolding Energy - mRNA 7.6461 kcal/mol@LB@Unfolding Energy - sRNA 12.0385 kcal/mol@LB@@LB@Position - mRNA 2 -- 35@LB@Position - sRNA 4 -- 52@LB@Position Seed - mRNA 29 -- 35@LB@Position Seed - sRNA 4 -- 10@LB@ |
| 144 |
0.01658 |
0.3828 |
b3731 |
atpC |
-9.12 |
0.181998 |
70 -- 89 |
6 -- 25 |
F1 sector of membrane-bound ATP synthase epsilon subunit |
|
_____________69___________________90\n_____________|____________________|\n5'-UCC...ACACC___C_____UU_________CAUGG...UGG-3'\n______________AUC_GUGGC__UAAAGGCAU\n______________|||_|||:|__|||||||||\n______________UAG_CACUG__AUUUCCGUA\n3'-UUU...UAUUU___A_____UU_________UAUUG-5'\n_____________|____________________|\n_____________26___________________5\n |
83 -- 89 |
6 -- 12 |
-21.8685 kcal/mol |
8.00712 kcal/mol |
4.73944 kcal/mol |
69 90@LB@ | |@LB@5'-UCC...ACACC C UU CAUGG...UGG-3'@LB@ AUC GUGGC UAAAGGCAU@LB@ ||| |||:| |||||||||@LB@ UAG CACUG AUUUCCGUA@LB@3'-UUU...UAUUU A UU UAUUG-5'@LB@ | |@LB@ 26 5@LB@@LB@@LB@Energy -9.12 kcal/mol@LB@Hybridization Energy -21.8685 kcal/mol@LB@Unfolding Energy - mRNA 8.00712 kcal/mol@LB@Unfolding Energy - sRNA 4.73944 kcal/mol@LB@@LB@Position - mRNA 70 -- 89@LB@Position - sRNA 6 -- 25@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 62 |
0.004714 |
0.2539 |
b0973 |
hyaB |
-9.08 |
0.185506 |
169 -- 187 |
48 -- 64 |
hydrogenase 1 large subunit |
|
_____________168_________________188\n_____________|___________________|\n5'-GGU...AAACC___C_____CCA_______AGGAU...GCG-3'\n______________GAA_AUCAG___GGCAAUG\n______________|||_|||||___|||||||\n______________CUU_UAGUC___CCGUUAC\n3'-UUU...ACAAC___U_____A_________GUUAC...UUG-5'\n_____________|___________________|\n_____________65__________________47\n |
181 -- 187 |
48 -- 54 |
-17.0784 kcal/mol |
4.02672 kcal/mol |
3.97302 kcal/mol |
168 188@LB@ | |@LB@5'-GGU...AAACC C CCA AGGAU...GCG-3'@LB@ GAA AUCAG GGCAAUG@LB@ ||| ||||| |||||||@LB@ CUU UAGUC CCGUUAC@LB@3'-UUU...ACAAC U A GUUAC...UUG-5'@LB@ | |@LB@ 65 47@LB@@LB@@LB@Energy -9.08 kcal/mol@LB@Hybridization Energy -17.0784 kcal/mol@LB@Unfolding Energy - mRNA 4.02672 kcal/mol@LB@Unfolding Energy - sRNA 3.97302 kcal/mol@LB@@LB@Position - mRNA 169 -- 187@LB@Position - sRNA 48 -- 64@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 48 -- 54@LB@ |
