| 85 |
0.007532 |
0.2889 |
b4252 |
tabA |
-7.64 |
0.334848 |
14 -- 22 |
41 -- 49 |
biofilm modulator regulated by toxins; DUF386 family protein cupin superfamily protein |
|
_____________13________23\n_____________|_________|\n5'-UCU...ACAGC_________GGGGG...CAA-3'\n______________UGCAAUGGC\n______________|||||||||\n______________ACGUUACCG\n3'-UUU...CCGUU_________GGUUG...UUG-5'\n_____________|_________|\n_____________50________40\n |
16 -- 22 |
41 -- 47 |
-14.0816 kcal/mol |
4.16801 kcal/mol |
2.27678 kcal/mol |
13 23@LB@ | |@LB@5'-UCU...ACAGC GGGGG...CAA-3'@LB@ UGCAAUGGC@LB@ |||||||||@LB@ ACGUUACCG@LB@3'-UUU...CCGUU GGUUG...UUG-5'@LB@ | |@LB@ 50 40@LB@@LB@@LB@Energy -7.64 kcal/mol@LB@Hybridization Energy -14.0816 kcal/mol@LB@Unfolding Energy - mRNA 4.16801 kcal/mol@LB@Unfolding Energy - sRNA 2.27678 kcal/mol@LB@@LB@Position - mRNA 14 -- 22@LB@Position - sRNA 41 -- 49@LB@Position Seed - mRNA 16 -- 22@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 159 |
0.01815 |
0.3828 |
b2418 |
pdxK |
-7.58 |
0.341503 |
51 -- 77 |
38 -- 65 |
pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase |
|
_____________50___________________________78\n_____________|____________________________|\n5'-CAU...AACGG____U____UUA___________A____GACAA...GCA-3'\n______________GGAG_GUCA___GUAGUGUAAUG__CCA\n______________|||:_:|||___|:|:||:||||__|||\n______________CCUU_UAGU___CGUUACGUUAC__GGU\n3'-UUU...UACAA____U____CAC___________CG___UGUCU...UUG-5'\n_____________|____________________________|\n_____________66___________________________37\n |
67 -- 73 |
43 -- 49 |
-23.6415 kcal/mol |
9.38399 kcal/mol |
6.67322 kcal/mol |
50 78@LB@ | |@LB@5'-CAU...AACGG U UUA A GACAA...GCA-3'@LB@ GGAG GUCA GUAGUGUAAUG CCA@LB@ |||: :||| |:|:||:|||| |||@LB@ CCUU UAGU CGUUACGUUAC GGU@LB@3'-UUU...UACAA U CAC CG UGUCU...UUG-5'@LB@ | |@LB@ 66 37@LB@@LB@@LB@Energy -7.58 kcal/mol@LB@Hybridization Energy -23.6415 kcal/mol@LB@Unfolding Energy - mRNA 9.38399 kcal/mol@LB@Unfolding Energy - sRNA 6.67322 kcal/mol@LB@@LB@Position - mRNA 51 -- 77@LB@Position - sRNA 38 -- 65@LB@Position Seed - mRNA 67 -- 73@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 157 |
0.01802 |
0.3828 |
b3693 |
dgoK |
-7.47 |
0.356536 |
125 -- 141 |
46 -- 60 |
2-oxo-3-deoxygalactonate kinase |
|
_____________124_______________142\n_____________|_________________|\n5'-CAG...ACGAC_____GAC_________GCAGA...CAG-3'\n______________AUCAG___GGCGAUGCG\n______________|||||___|||:||||:\n______________UAGUC___CCGUUACGU\n3'-UUU...CCUUU_____A___________UACCG...UUG-5'\n_____________|_________________|\n_____________61________________45\n |
134 -- 140 |
47 -- 53 |
-18.5317 kcal/mol |
7.63037 kcal/mol |
3.43341 kcal/mol |
124 142@LB@ | |@LB@5'-CAG...ACGAC GAC GCAGA...CAG-3'@LB@ AUCAG GGCGAUGCG@LB@ ||||| |||:||||:@LB@ UAGUC CCGUUACGU@LB@3'-UUU...CCUUU A UACCG...UUG-5'@LB@ | |@LB@ 61 45@LB@@LB@@LB@Energy -7.47 kcal/mol@LB@Hybridization Energy -18.5317 kcal/mol@LB@Unfolding Energy - mRNA 7.63037 kcal/mol@LB@Unfolding Energy - sRNA 3.43341 kcal/mol@LB@@LB@Position - mRNA 125 -- 141@LB@Position - sRNA 46 -- 60@LB@Position Seed - mRNA 134 -- 140@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 148 |
0.01733 |
0.3828 |
b1760 |
ynjH |
-7.42 |
0.362448 |
2 -- 64 |
11 -- 71 |
DUF1496 family protein |
|
_____________1________________________________________________________________65\n_____________|________________________________________________________________|\n__________5'-U_______UUUAU____U___CUUU______U_______UAUACCAUCAAGAA____________CAAGA...AAG-3'\n______________UAUGUUG_____GUCA_GUG____UGCAGU__UUCGAC______________UGUGACGGUAAG\n______________|||||||_____:|||_|||____||||:|__::|:||______________||||||::|||:\n______________AUACAAC_____UAGU_CAC____ACGUUA__GGGUUG______________ACACUGUUAUUU\n3'-UUU...AAAAU_______CUUU_________CGUU______CC______UCUUUUAUUUUAG_____________CCGUA...UUG-5'\n_____________|________________________________________________________________|\n_____________72_______________________________________________________________10\n |
58 -- 64 |
11 -- 17 |
-35.6179 kcal/mol |
16.0903 kcal/mol |
12.1045 kcal/mol |
1 65@LB@ | |@LB@ 5'-U UUUAU U CUUU U UAUACCAUCAAGAA CAAGA...AAG-3'@LB@ UAUGUUG GUCA GUG UGCAGU UUCGAC UGUGACGGUAAG@LB@ ||||||| :||| ||| ||||:| ::|:|| ||||||::|||:@LB@ AUACAAC UAGU CAC ACGUUA GGGUUG ACACUGUUAUUU@LB@3'-UUU...AAAAU CUUU CGUU CC UCUUUUAUUUUAG CCGUA...UUG-5'@LB@ | |@LB@ 72 10@LB@@LB@@LB@Energy -7.42 kcal/mol@LB@Hybridization Energy -35.6179 kcal/mol@LB@Unfolding Energy - mRNA 16.0903 kcal/mol@LB@Unfolding Energy - sRNA 12.1045 kcal/mol@LB@@LB@Position - mRNA 2 -- 64@LB@Position - sRNA 11 -- 71@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 155 |
0.01799 |
0.3828 |
b1446 |
ydcY |
-7.41 |
0.363872 |
123 -- 175 |
11 -- 59 |
DUF2526 family protein |
|
_____________122______________________________________________________176\n_____________|________________________________________________________|\n5'-UAU...CUUAC___C____U___AC_____A___C_____CUU___UC_____GA___AU_______UUUCA...ACG-3'\n______________UCA_UGGC__UG____GGC_CCA_GCAGA___AUA__AUUUG__UGA__CGAUAAA\n______________|||_||||__||____|||_|||_:||||___|||__||:||__|||__|:|||||\n______________AGU_ACCG__AC____CCG_GGU_UGUCU___UAU__UAGAC__ACU__GUUAUUU\n3'-UUU...CUUUU___C____UU__GUUA_____________UU____UU___________________CCGUA...UUG-5'\n_____________|________________________________________________________|\n_____________60_______________________________________________________10\n |
169 -- 175 |
11 -- 17 |
-29.7235 kcal/mol |
11.188 kcal/mol |
11.1233 kcal/mol |
122 176@LB@ | |@LB@5'-UAU...CUUAC C U AC A C CUU UC GA AU UUUCA...ACG-3'@LB@ UCA UGGC UG GGC CCA GCAGA AUA AUUUG UGA CGAUAAA@LB@ ||| |||| || ||| ||| :|||| ||| ||:|| ||| |:|||||@LB@ AGU ACCG AC CCG GGU UGUCU UAU UAGAC ACU GUUAUUU@LB@3'-UUU...CUUUU C UU GUUA UU UU CCGUA...UUG-5'@LB@ | |@LB@ 60 10@LB@@LB@@LB@Energy -7.41 kcal/mol@LB@Hybridization Energy -29.7235 kcal/mol@LB@Unfolding Energy - mRNA 11.188 kcal/mol@LB@Unfolding Energy - sRNA 11.1233 kcal/mol@LB@@LB@Position - mRNA 123 -- 175@LB@Position - sRNA 11 -- 59@LB@Position Seed - mRNA 169 -- 175@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 18 |
0.0007704 |
0.1438 |
b4526 |
ydaE |
-7.35 |
0.372707 |
186 -- 222 |
21 -- 54 |
conserved protein Rac prophage |
|
_____________185___________________________________223\n_____________|_____________________________________|\n5'-ACU...GUAAA_____A__C_____GA____UA____________G__CUUAC...UAU-3'\n______________GGCGG_GU_AUGGU__UGAC__AGAAAAUAAAAU_UG\n______________|||::_|:_||||:__::||__||||||||||||_||\n______________CCGUU_CG_UACCG__GUUG__UCUUUUAUUUUA_AC\n3'-UUU...AGUCA_____A__U_____G___________________G__ACUGU...UUG-5'\n_____________|_____________________________________|\n_____________55____________________________________20\n |
212 -- 218 |
25 -- 31 |
-28.7009 kcal/mol |
12.2907 kcal/mol |
9.06413 kcal/mol |
185 223@LB@ | |@LB@5'-ACU...GUAAA A C GA UA G CUUAC...UAU-3'@LB@ GGCGG GU AUGGU UGAC AGAAAAUAAAAU UG@LB@ |||:: |: ||||: ::|| |||||||||||| ||@LB@ CCGUU CG UACCG GUUG UCUUUUAUUUUA AC@LB@3'-UUU...AGUCA A U G G ACUGU...UUG-5'@LB@ | |@LB@ 55 20@LB@@LB@@LB@Energy -7.35 kcal/mol@LB@Hybridization Energy -28.7009 kcal/mol@LB@Unfolding Energy - mRNA 12.2907 kcal/mol@LB@Unfolding Energy - sRNA 9.06413 kcal/mol@LB@@LB@Position - mRNA 186 -- 222@LB@Position - sRNA 21 -- 54@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 153 |
0.01791 |
0.3828 |
b2384 |
ypdE |
-7.27 |
0.383330 |
233 -- 249 |
39 -- 54 |
aminopeptidase |
b4305 b3898 |
_____________232_______________250\n_____________|_________________|\n5'-AUU...AGCGA____G_______C____CCUCG...UGC-3'\n______________GGCA_AUGCGAU_GCCU\n______________||||_||||:||_|||:\n______________CCGU_UACGUUA_CGGG\n3'-UUU...AGUCA____________C____UUGUC...UUG-5'\n_____________|_________________|\n_____________55________________38\n |
238 -- 244 |
44 -- 50 |
-20.1031 kcal/mol |
8.07514 kcal/mol |
4.76022 kcal/mol |
232 250@LB@ | |@LB@5'-AUU...AGCGA G C CCUCG...UGC-3'@LB@ GGCA AUGCGAU GCCU@LB@ |||| ||||:|| |||:@LB@ CCGU UACGUUA CGGG@LB@3'-UUU...AGUCA C UUGUC...UUG-5'@LB@ | |@LB@ 55 38@LB@@LB@@LB@Energy -7.27 kcal/mol@LB@Hybridization Energy -20.1031 kcal/mol@LB@Unfolding Energy - mRNA 8.07514 kcal/mol@LB@Unfolding Energy - sRNA 4.76022 kcal/mol@LB@@LB@Position - mRNA 233 -- 249@LB@Position - sRNA 39 -- 54@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 179 |
0.02223 |
0.4143 |
b2167 |
fruA |
-7.15 |
0.399094 |
192 -- 200 |
5 -- 13 |
fused fructose-specific PTS enzymes: IIBcomponent/IIC components |
|
_____________191_______201\n_____________|_________|\n5'-CGC...GCAGG_________AUGAA...AAA-3'\n______________AGAGGCAUA\n______________|:|||||||\n______________UUUCCGUAU\n3'-UUU...UGUUA_________AUUG-5'\n_____________|_________|\n_____________14________4\n |
194 -- 200 |
5 -- 11 |
-11.8443 kcal/mol |
1.8873 kcal/mol |
2.80332 kcal/mol |
191 201@LB@ | |@LB@5'-CGC...GCAGG AUGAA...AAA-3'@LB@ AGAGGCAUA@LB@ |:|||||||@LB@ UUUCCGUAU@LB@3'-UUU...UGUUA AUUG-5'@LB@ | |@LB@ 14 4@LB@@LB@@LB@Energy -7.15 kcal/mol@LB@Hybridization Energy -11.8443 kcal/mol@LB@Unfolding Energy - mRNA 1.8873 kcal/mol@LB@Unfolding Energy - sRNA 2.80332 kcal/mol@LB@@LB@Position - mRNA 192 -- 200@LB@Position - sRNA 5 -- 13@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 5 -- 11@LB@ |
| 35 |
0.002227 |
0.2088 |
b1482 |
osmC |
-7.15 |
0.399399 |
183 -- 208 |
14 -- 42 |
lipoyl-dependent Cys-based peroxidase hydroperoxide resistance; salt-shock inducible membrane protein; peroxiredoxin |
|
_____________182___________________________209\n_____________|_____________________________|\n5'-UAG...UUUAA_____________GCAACAA_________CCAUA...CGU-3'\n______________GCCC_ACAGGAGA_________UGACAAU\n______________||||_||||:|:|_________|||||||\n______________CGGG_UGUCUUUU_________ACUGUUA\n3'-UUU...GUUAC____U________AUUUUAGAC_______UUUCC...UUG-5'\n_____________|_____________________________|\n_____________43____________________________13\n |
202 -- 208 |
14 -- 20 |
-22.1887 kcal/mol |
4.46968 kcal/mol |
10.5676 kcal/mol |
182 209@LB@ | |@LB@5'-UAG...UUUAA GCAACAA CCAUA...CGU-3'@LB@ GCCC ACAGGAGA UGACAAU@LB@ |||| ||||:|:| |||||||@LB@ CGGG UGUCUUUU ACUGUUA@LB@3'-UUU...GUUAC U AUUUUAGAC UUUCC...UUG-5'@LB@ | |@LB@ 43 13@LB@@LB@@LB@Energy -7.15 kcal/mol@LB@Hybridization Energy -22.1887 kcal/mol@LB@Unfolding Energy - mRNA 4.46968 kcal/mol@LB@Unfolding Energy - sRNA 10.5676 kcal/mol@LB@@LB@Position - mRNA 183 -- 208@LB@Position - sRNA 14 -- 42@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 46 |
0.003168 |
0.2306 |
b3066 |
dnaG |
-7.10 |
0.407270 |
188 -- 205 |
41 -- 63 |
DNA primase |
|
_____________187_____________________206\n_____________|_______________________|\n5'-ACC...UGCUA____________CU_________UGGAC...GCA-3'\n______________AAAAUCGG_GGC______AUGGC\n______________||||||:|_|||______|||||\n______________UUUUAGUC_CCG______UACCG\n3'-UUU...CAACC________A___UUACGU_____GGUUG...UUG-5'\n_____________|_______________________|\n_____________64______________________40\n |
189 -- 195 |
56 -- 62 |
-16.4791 kcal/mol |
5.10709 kcal/mol |
4.27657 kcal/mol |
187 206@LB@ | |@LB@5'-ACC...UGCUA CU UGGAC...GCA-3'@LB@ AAAAUCGG GGC AUGGC@LB@ ||||||:| ||| |||||@LB@ UUUUAGUC CCG UACCG@LB@3'-UUU...CAACC A UUACGU GGUUG...UUG-5'@LB@ | |@LB@ 64 40@LB@@LB@@LB@Energy -7.10 kcal/mol@LB@Hybridization Energy -16.4791 kcal/mol@LB@Unfolding Energy - mRNA 5.10709 kcal/mol@LB@Unfolding Energy - sRNA 4.27657 kcal/mol@LB@@LB@Position - mRNA 188 -- 205@LB@Position - sRNA 41 -- 63@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 56 -- 62@LB@ |
