| 192 |
0.02397 |
0.4199 |
b2465 |
tktB |
-14.96 |
0.008038 |
72 -- 123 |
6 -- 68 |
transketolase 2 thiamine triphosphate-binding |
|
_____________71__________________________________________________________________124\n_____________|___________________________________________________________________|\n5'-AGU...GUUCC_______GCAC_____________________GG_________ACU_____________________UCGUC...CUG-3'\n______________GUUGGGA____AAUCAG____GAUGCGAUGGC____UAGAAAA____GUCUG________AAGGCAU\n______________|||||:|____||||||____:||||:|||||____:||||||____:||||________|||||||\n______________CAACCUU____UUAGUC____UUACGUUACCG____GUCUUUU____UAGAC________UUCCGUA\n3'-UUU...AUAUA_________________ACCG___________GGUU_______AUUU_____ACUGUUAU_______UAUUG-5'\n_____________|___________________________________________________________________|\n_____________69__________________________________________________________________5\n |
117 -- 123 |
6 -- 12 |
-46.2591 kcal/mol |
19.141 kcal/mol |
12.1601 kcal/mol |
71 124@LB@ | |@LB@5'-AGU...GUUCC GCAC GG ACU UCGUC...CUG-3'@LB@ GUUGGGA AAUCAG GAUGCGAUGGC UAGAAAA GUCUG AAGGCAU@LB@ |||||:| |||||| :||||:||||| :|||||| :|||| |||||||@LB@ CAACCUU UUAGUC UUACGUUACCG GUCUUUU UAGAC UUCCGUA@LB@3'-UUU...AUAUA ACCG GGUU AUUU ACUGUUAU UAUUG-5'@LB@ | |@LB@ 69 5@LB@@LB@@LB@Energy -14.96 kcal/mol@LB@Hybridization Energy -46.2591 kcal/mol@LB@Unfolding Energy - mRNA 19.141 kcal/mol@LB@Unfolding Energy - sRNA 12.1601 kcal/mol@LB@@LB@Position - mRNA 72 -- 123@LB@Position - sRNA 6 -- 68@LB@Position Seed - mRNA 117 -- 123@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 147 |
0.01713 |
0.3828 |
b3354 |
yheU |
-14.93 |
0.008191 |
201 -- 276 |
7 -- 70 |
UPF0270 family protein |
|
_____________200_____________________________________________________________________________277\n_____________|_______________________________________________________________________________|\n5'-CUG...AAAUC______AU_____C_______GACCUCUCC_____AACGC________UU____GAAAGCUU____UUAC_________CCGAU...GUA-3'\n______________AUGUUG_____UC_GUGGCAA_________CCCGA_____UGGAAAAU__AAUU________UGUG____GUGAAGGCA\n______________||||||_____||_|||||||_________|||:|_____::||||||__|||:________||||____:|:||||||\n______________UACAAC_____AG_CACCGUU_________GGGUU_____GUCUUUUA__UUAG________ACAC____UAUUUCCGU\n3'-UUU...AAAUA______CUUUU__U_______ACGUUACC___________________UU________________UGU__________AUAUUG-5'\n_____________|_______________________________________________________________________________|\n_____________71______________________________________________________________________________6\n |
270 -- 276 |
7 -- 13 |
-40.9535 kcal/mol |
13.8654 kcal/mol |
12.1606 kcal/mol |
200 277@LB@ | |@LB@5'-CUG...AAAUC AU C GACCUCUCC AACGC UU GAAAGCUU UUAC CCGAU...GUA-3'@LB@ AUGUUG UC GUGGCAA CCCGA UGGAAAAU AAUU UGUG GUGAAGGCA@LB@ |||||| || ||||||| |||:| ::|||||| |||: |||| :|:||||||@LB@ UACAAC AG CACCGUU GGGUU GUCUUUUA UUAG ACAC UAUUUCCGU@LB@3'-UUU...AAAUA CUUUU U ACGUUACC UU UGU AUAUUG-5'@LB@ | |@LB@ 71 6@LB@@LB@@LB@Energy -14.93 kcal/mol@LB@Hybridization Energy -40.9535 kcal/mol@LB@Unfolding Energy - mRNA 13.8654 kcal/mol@LB@Unfolding Energy - sRNA 12.1606 kcal/mol@LB@@LB@Position - mRNA 201 -- 276@LB@Position - sRNA 7 -- 70@LB@Position Seed - mRNA 270 -- 276@LB@Position Seed - sRNA 7 -- 13@LB@ |
| 82 |
0.006986 |
0.2822 |
b3128 |
garD |
-14.80 |
0.008847 |
185 -- 224 |
15 -- 66 |
D-galactarate dehydrogenase |
|
_____________184__________________________________________________225\n_____________|____________________________________________________|\n5'-AUA...CUGGC________AUU_____________________UC__________A_______GAAAC...UGA-3'\n______________UGGAGAAU_____GCA___CAAUGGCC_AACA______GAAAUC___GACAA\n______________||||:|||_____|||___||||||||_||||______:|||||___|||||\n______________ACCUUUUA_____CGU___GUUACCGG_UUGU______UUUUAG___CUGUU\n3'-UUU...AUACA________GUCAC___UAC________G____CUUUUA______ACA_____AUUUC...UUG-5'\n_____________|____________________________________________________|\n_____________67___________________________________________________14\n |
200 -- 206 |
40 -- 46 |
-31.4715 kcal/mol |
5.54782 kcal/mol |
11.1209 kcal/mol |
184 225@LB@ | |@LB@5'-AUA...CUGGC AUU UC A GAAAC...UGA-3'@LB@ UGGAGAAU GCA CAAUGGCC AACA GAAAUC GACAA@LB@ ||||:||| ||| |||||||| |||| :||||| |||||@LB@ ACCUUUUA CGU GUUACCGG UUGU UUUUAG CUGUU@LB@3'-UUU...AUACA GUCAC UAC G CUUUUA ACA AUUUC...UUG-5'@LB@ | |@LB@ 67 14@LB@@LB@@LB@Energy -14.80 kcal/mol@LB@Hybridization Energy -31.4715 kcal/mol@LB@Unfolding Energy - mRNA 5.54782 kcal/mol@LB@Unfolding Energy - sRNA 11.1209 kcal/mol@LB@@LB@Position - mRNA 185 -- 224@LB@Position - sRNA 15 -- 66@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 105 |
0.009758 |
0.3118 |
b4478 |
dgoD |
-14.76 |
0.009064 |
185 -- 203 |
43 -- 60 |
D-galactonate dehydratase |
|
_____________184_________________204\n_____________|___________________|\n5'-AAA...GGCGU___G__A____________AAAAU...UGA-3'\n______________AUC_AG_GGCAGUGCAAUG\n______________|||_||_||||:|||||||\n______________UAG_UC_CCGUUACGUUAC\n3'-UUU...CCUUU______A____________CGGGU...UUG-5'\n_____________|___________________|\n_____________61__________________42\n |
197 -- 203 |
43 -- 49 |
-22.2033 kcal/mol |
3.91427 kcal/mol |
3.52557 kcal/mol |
184 204@LB@ | |@LB@5'-AAA...GGCGU G A AAAAU...UGA-3'@LB@ AUC AG GGCAGUGCAAUG@LB@ ||| || ||||:|||||||@LB@ UAG UC CCGUUACGUUAC@LB@3'-UUU...CCUUU A CGGGU...UUG-5'@LB@ | |@LB@ 61 42@LB@@LB@@LB@Energy -14.76 kcal/mol@LB@Hybridization Energy -22.2033 kcal/mol@LB@Unfolding Energy - mRNA 3.91427 kcal/mol@LB@Unfolding Energy - sRNA 3.52557 kcal/mol@LB@@LB@Position - mRNA 185 -- 203@LB@Position - sRNA 43 -- 60@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 11 |
0.000438 |
0.1262 |
b0467 |
priC |
-14.72 |
0.009297 |
1 -- 37 |
32 -- 65 |
primosomal replication protein N'' |
|
______________1____________________________________38\n______________|____________________________________|\n___________5'-______GAACG_____A___CCA___CG_________UAAAC...GUU-3'\n______________GGGGAA_____GGCAA_GCA___GGC__CCAGCAGGA\n______________||::||_____|||||_|||___|||__|||:|||:|\n______________CCUUUU_____CCGUU_CGU___CCG__GGUUGUCUU\n3'-UUU...UACAA______AGUCA_____A___UA_______________UUAUU...UUG-5'\n_____________|_____________________________________|\n_____________66____________________________________31\n |
30 -- 36 |
33 -- 39 |
-34.0772 kcal/mol |
8.3902 kcal/mol |
10.9649 kcal/mol |
1 38@LB@ | |@LB@ 5'- GAACG A CCA CG UAAAC...GUU-3'@LB@ GGGGAA GGCAA GCA GGC CCAGCAGGA@LB@ ||::|| ||||| ||| ||| |||:|||:|@LB@ CCUUUU CCGUU CGU CCG GGUUGUCUU@LB@3'-UUU...UACAA AGUCA A UA UUAUU...UUG-5'@LB@ | |@LB@ 66 31@LB@@LB@@LB@Energy -14.72 kcal/mol@LB@Hybridization Energy -34.0772 kcal/mol@LB@Unfolding Energy - mRNA 8.3902 kcal/mol@LB@Unfolding Energy - sRNA 10.9649 kcal/mol@LB@@LB@Position - mRNA 1 -- 37@LB@Position - sRNA 32 -- 65@LB@Position Seed - mRNA 30 -- 36@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 19 |
0.0008126 |
0.1438 |
b1205 |
ychH |
-14.60 |
0.010030 |
245 -- 269 |
40 -- 68 |
DUF2583 family putative inner membrane protein |
|
_____________244____________________________270\n_____________|______________________________|\n5'-CAA...AUGGG___________U__________________GGCGU...UAC-3'\n______________GUUGG___GUC_GGUGGUAAUG__GUGGUC\n______________|||||___:||_:||||:||||__:|||:|\n______________CAACC___UAG_UCACCGUUAC__UACCGG\n3'-UUU...AUAUA_____UUU______________GU______GUUGU...UUG-5'\n_____________|______________________________|\n_____________69_____________________________39\n |
257 -- 263 |
48 -- 54 |
-27.4871 kcal/mol |
6.07036 kcal/mol |
6.81885 kcal/mol |
244 270@LB@ | |@LB@5'-CAA...AUGGG U GGCGU...UAC-3'@LB@ GUUGG GUC GGUGGUAAUG GUGGUC@LB@ ||||| :|| :||||:|||| :|||:|@LB@ CAACC UAG UCACCGUUAC UACCGG@LB@3'-UUU...AUAUA UUU GU GUUGU...UUG-5'@LB@ | |@LB@ 69 39@LB@@LB@@LB@Energy -14.60 kcal/mol@LB@Hybridization Energy -27.4871 kcal/mol@LB@Unfolding Energy - mRNA 6.07036 kcal/mol@LB@Unfolding Energy - sRNA 6.81885 kcal/mol@LB@@LB@Position - mRNA 245 -- 269@LB@Position - sRNA 40 -- 68@LB@Position Seed - mRNA 257 -- 263@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 111 |
0.01033 |
0.313 |
b1120 |
cobB |
-14.51 |
0.010573 |
178 -- 236 |
7 -- 64 |
deacetylase of acs and cheY chemotaxis regulator |
|
_____________177______________________________________________________________237\n_____________|________________________________________________________________|\n5'-CGC...UUUCA____UAA______GCCG__A_______AAA___CA______C____GUAC______________GGAAU...AUC-3'\n______________GAGA___AGUGGU____GA_GCAAUGG___AAC__AGAGUA___UC____UGACAG___GGGCA\n______________||:|___|||||:____:|_|||||||___|||__|:|:||___||____|||||:___:||||\n______________CUUU___UCACCG____UU_CGUUACC___UUG__UUUUAU___AG____ACUGUU___UCCGU\n3'-UUU...ACAAC____UAG____________A_______GGG___UC______UUU__AC________AUU_____AUAUUG-5'\n_____________|________________________________________________________________|\n_____________65_______________________________________________________________6\n |
198 -- 204 |
42 -- 48 |
-37.7371 kcal/mol |
11.0723 kcal/mol |
12.1536 kcal/mol |
177 237@LB@ | |@LB@5'-CGC...UUUCA UAA GCCG A AAA CA C GUAC GGAAU...AUC-3'@LB@ GAGA AGUGGU GA GCAAUGG AAC AGAGUA UC UGACAG GGGCA@LB@ ||:| |||||: :| ||||||| ||| |:|:|| || |||||: :||||@LB@ CUUU UCACCG UU CGUUACC UUG UUUUAU AG ACUGUU UCCGU@LB@3'-UUU...ACAAC UAG A GGG UC UUU AC AUU AUAUUG-5'@LB@ | |@LB@ 65 6@LB@@LB@@LB@Energy -14.51 kcal/mol@LB@Hybridization Energy -37.7371 kcal/mol@LB@Unfolding Energy - mRNA 11.0723 kcal/mol@LB@Unfolding Energy - sRNA 12.1536 kcal/mol@LB@@LB@Position - mRNA 178 -- 236@LB@Position - sRNA 7 -- 64@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 107 |
0.009921 |
0.3118 |
b0836 |
bssR |
-14.44 |
0.011050 |
12 -- 65 |
14 -- 65 |
repressor of biofilm formation by indole transport regulation |
|
_____________11____________________________________________________________66\n_____________|_____________________________________________________________|\n5'-AUU...UUACA_____G___________________A___U______UUCUG____________AUC_____CUCAU...ACA-3'\n______________GGAAA_GUCAG_GGCAG______GG_UUC_ACAGAG_____GAUAAAAUUUGU___GCAAU\n______________|||||_:||||_||||:______||_::|_|||||:_____:|||||||:|||___:||||\n______________CCUUU_UAGUC_CCGUU______CC_GGG_UGUCUU_____UUAUUUUAGACA___UGUUA\n3'-UUU...UACAA___________A_____ACGUUA______U_______________________C_______UUUCC...UUG-5'\n_____________|_____________________________________________________________|\n_____________66____________________________________________________________13\n |
46 -- 52 |
25 -- 31 |
-37.4064 kcal/mol |
11.8508 kcal/mol |
11.1173 kcal/mol |
11 66@LB@ | |@LB@5'-AUU...UUACA G A U UUCUG AUC CUCAU...ACA-3'@LB@ GGAAA GUCAG GGCAG GG UUC ACAGAG GAUAAAAUUUGU GCAAU@LB@ ||||| :|||| ||||: || ::| |||||: :|||||||:||| :||||@LB@ CCUUU UAGUC CCGUU CC GGG UGUCUU UUAUUUUAGACA UGUUA@LB@3'-UUU...UACAA A ACGUUA U C UUUCC...UUG-5'@LB@ | |@LB@ 66 13@LB@@LB@@LB@Energy -14.44 kcal/mol@LB@Hybridization Energy -37.4064 kcal/mol@LB@Unfolding Energy - mRNA 11.8508 kcal/mol@LB@Unfolding Energy - sRNA 11.1173 kcal/mol@LB@@LB@Position - mRNA 12 -- 65@LB@Position - sRNA 14 -- 65@LB@Position Seed - mRNA 46 -- 52@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 14 |
0.0005336 |
0.1268 |
b0178 |
skp |
-14.43 |
0.011083 |
94 -- 112 |
46 -- 65 |
periplasmic chaperone |
|
_____________93___________________113\n_____________|____________________|\n5'-CUC...ACAAA____UG______________GCGAU...UCC-3'\n______________GGAA___UAGUGGUAGUGUA\n______________||||___:|||||:|:||:|\n______________CCUU___GUCACCGUUACGU\n3'-UUU...UACAA____UUA_____________UACCG...UUG-5'\n_____________|____________________|\n_____________66___________________45\n |
105 -- 111 |
47 -- 53 |
-21.6303 kcal/mol |
3.11688 kcal/mol |
4.07994 kcal/mol |
93 113@LB@ | |@LB@5'-CUC...ACAAA UG GCGAU...UCC-3'@LB@ GGAA UAGUGGUAGUGUA@LB@ |||| :|||||:|:||:|@LB@ CCUU GUCACCGUUACGU@LB@3'-UUU...UACAA UUA UACCG...UUG-5'@LB@ | |@LB@ 66 45@LB@@LB@@LB@Energy -14.43 kcal/mol@LB@Hybridization Energy -21.6303 kcal/mol@LB@Unfolding Energy - mRNA 3.11688 kcal/mol@LB@Unfolding Energy - sRNA 4.07994 kcal/mol@LB@@LB@Position - mRNA 94 -- 112@LB@Position - sRNA 46 -- 65@LB@Position Seed - mRNA 105 -- 111@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 4 |
6.145e-05 |
0.05167 |
b4217 |
ytfK |
-14.33 |
0.011783 |
150 -- 205 |
11 -- 68 |
DUF1107 family protein |
|
_____________149________________________________________________________________206\n_____________|__________________________________________________________________|\n5'-GAA...UAAUA______CC___________CC___CA___GUAAUAC______________________________AAUUU...AAU-3'\n______________GUUGGG__GAUU_GUGGCA__GCA__GGC_______UCAGCAGGAGAUA_________ACAAUGAA\n______________|||||:__:||:_||||||__|||__|||_______:||:|||:|:|||_________|||||:||\n______________CAACCU__UUAG_CACCGU__CGU__CCG_______GGUUGUCUUUUAU_________UGUUAUUU\n3'-UUU...AUAUA______U_____U______UA___UA_______________________UUUAGACAC________CCGUA...UUG-5'\n_____________|__________________________________________________________________|\n_____________69_________________________________________________________________10\n |
199 -- 205 |
11 -- 17 |
-43.2853 kcal/mol |
16.8726 kcal/mol |
12.0809 kcal/mol |
149 206@LB@ | |@LB@5'-GAA...UAAUA CC CC CA GUAAUAC AAUUU...AAU-3'@LB@ GUUGGG GAUU GUGGCA GCA GGC UCAGCAGGAGAUA ACAAUGAA@LB@ |||||: :||: |||||| ||| ||| :||:|||:|:||| |||||:||@LB@ CAACCU UUAG CACCGU CGU CCG GGUUGUCUUUUAU UGUUAUUU@LB@3'-UUU...AUAUA U U UA UA UUUAGACAC CCGUA...UUG-5'@LB@ | |@LB@ 69 10@LB@@LB@@LB@Energy -14.33 kcal/mol@LB@Hybridization Energy -43.2853 kcal/mol@LB@Unfolding Energy - mRNA 16.8726 kcal/mol@LB@Unfolding Energy - sRNA 12.0809 kcal/mol@LB@@LB@Position - mRNA 150 -- 205@LB@Position - sRNA 11 -- 68@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 11 -- 17@LB@ |
