| 154 |
0.03071 |
0.6177 |
b0368 |
tauD |
-7.18 |
0.150437 |
69 -- 85 |
40 -- 55 |
taurine dioxygenase 2-oxoglutarate-dependent |
|
_____________68________________86\n_____________|_________________|\n5'-GUG...GUUCA_____C___U_______UCGCA...AAC-3'\n______________GUCAG_GGG_GAAUUUC\n______________||||:_|:|_|||||||\n______________CAGUU_CUC_CUUAAAG\n3'-UUU...CCGGG_____U___________UAAAA...ACA-5'\n_____________|_________________|\n_____________56________________39\n |
79 -- 85 |
40 -- 46 |
-16.0696 kcal/mol |
7.86965 kcal/mol |
1.01784 kcal/mol |
68 86@LB@ | |@LB@5'-GUG...GUUCA C U UCGCA...AAC-3'@LB@ GUCAG GGG GAAUUUC@LB@ ||||: |:| |||||||@LB@ CAGUU CUC CUUAAAG@LB@3'-UUU...CCGGG U UAAAA...ACA-5'@LB@ | |@LB@ 56 39@LB@@LB@@LB@Energy -7.18 kcal/mol@LB@Hybridization Energy -16.0696 kcal/mol@LB@Unfolding Energy - mRNA 7.86965 kcal/mol@LB@Unfolding Energy - sRNA 1.01784 kcal/mol@LB@@LB@Position - mRNA 69 -- 85@LB@Position - sRNA 40 -- 55@LB@Position Seed - mRNA 79 -- 85@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 128 |
0.02532 |
0.6177 |
b3642 |
pyrE |
-8.06 |
0.101423 |
72 -- 92 |
43 -- 68 |
orotate phosphoribosyltransferase |
|
_____________71_________________________93\n_____________|__________________________|\n5'-CGG...CUUGU_G___C____________________CGAAU...AUU-3'\n______________U_GCU__UGGCCCG____AGGGGAAU\n______________|_|||__|||||||____||:|||||\n______________A_CGA__ACCGGGC____UCUCCUUA\n3'-UUU...GUUAU_G___UA_______AGUU________AAGUA...ACA-5'\n_____________|__________________________|\n_____________69_________________________42\n |
86 -- 92 |
43 -- 49 |
-26.5136 kcal/mol |
7.12642 kcal/mol |
11.3306 kcal/mol |
71 93@LB@ | |@LB@5'-CGG...CUUGU G C CGAAU...AUU-3'@LB@ U GCU UGGCCCG AGGGGAAU@LB@ | ||| ||||||| ||:|||||@LB@ A CGA ACCGGGC UCUCCUUA@LB@3'-UUU...GUUAU G UA AGUU AAGUA...ACA-5'@LB@ | |@LB@ 69 42@LB@@LB@@LB@Energy -8.06 kcal/mol@LB@Hybridization Energy -26.5136 kcal/mol@LB@Unfolding Energy - mRNA 7.12642 kcal/mol@LB@Unfolding Energy - sRNA 11.3306 kcal/mol@LB@@LB@Position - mRNA 72 -- 92@LB@Position - sRNA 43 -- 68@LB@Position Seed - mRNA 86 -- 92@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 184 |
0.03803 |
0.6177 |
b3647 |
ligB |
-3.67 |
0.590336 |
72 -- 111 |
39 -- 67 |
DNA ligase NAD(+)-dependent |
|
_____________71________________________________________112\n_____________|_________________________________________|\n5'-GGC...GCUUC_______U________UUCACUGCAAUA____C__U_____GGAAG...AAA-3'\n______________CGC_AUU_GCCUGUCA____________AAGA_GA_UUUCA\n______________|||_|||_|||:||||____________||||_||_|||||\n______________GCG_UAA_CGGGCAGU____________UUCU_CU_AAAGU\n3'-UUU...UUAUA___A___C________________________C__U_____AAAAA...ACA-5'\n_____________|_________________________________________|\n_____________68________________________________________38\n |
80 -- 86 |
52 -- 58 |
-24.1741 kcal/mol |
6.974 kcal/mol |
13.5271 kcal/mol |
71 112@LB@ | |@LB@5'-GGC...GCUUC U UUCACUGCAAUA C U GGAAG...AAA-3'@LB@ CGC AUU GCCUGUCA AAGA GA UUUCA@LB@ ||| ||| |||:|||| |||| || |||||@LB@ GCG UAA CGGGCAGU UUCU CU AAAGU@LB@3'-UUU...UUAUA A C C U AAAAA...ACA-5'@LB@ | |@LB@ 68 38@LB@@LB@@LB@Energy -3.67 kcal/mol@LB@Hybridization Energy -24.1741 kcal/mol@LB@Unfolding Energy - mRNA 6.974 kcal/mol@LB@Unfolding Energy - sRNA 13.5271 kcal/mol@LB@@LB@Position - mRNA 72 -- 111@LB@Position - sRNA 39 -- 67@LB@Position Seed - mRNA 80 -- 86@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 95 |
0.01894 |
0.6177 |
b0407 |
yajC |
-8.94 |
0.067585 |
73 -- 105 |
45 -- 79 |
SecYEG protein translocase auxillary subunit |
|
_____________72___________________________________106\n_____________|____________________________________|\n5'-UCU...CGUUU______G___U_A___AA______A___________UAAAU...UUU-3'\n______________GAUGGC_GGU_U_CGC____GGCU__UUGAAGAGGG\n______________:|||||_::|_|_|||____|||:__|::||||||:\n______________UUACCG_UUA_A_GCG____CCGG__AGUUUCUCCU\n______3'-UUUUU______G___U_____AUAA____GC__________UAAAG...ACA-5'\n_____________|____________________________________|\n_____________80___________________________________44\n |
99 -- 105 |
45 -- 51 |
-30.8043 kcal/mol |
8.31146 kcal/mol |
13.5551 kcal/mol |
72 106@LB@ | |@LB@5'-UCU...CGUUU G U A AA A UAAAU...UUU-3'@LB@ GAUGGC GGU U CGC GGCU UUGAAGAGGG@LB@ :||||| ::| | ||| |||: |::||||||:@LB@ UUACCG UUA A GCG CCGG AGUUUCUCCU@LB@ 3'-UUUUU G U AUAA GC UAAAG...ACA-5'@LB@ | |@LB@ 80 44@LB@@LB@@LB@Energy -8.94 kcal/mol@LB@Hybridization Energy -30.8043 kcal/mol@LB@Unfolding Energy - mRNA 8.31146 kcal/mol@LB@Unfolding Energy - sRNA 13.5551 kcal/mol@LB@@LB@Position - mRNA 73 -- 105@LB@Position - sRNA 45 -- 79@LB@Position Seed - mRNA 99 -- 105@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 190 |
0.03948 |
0.6177 |
b2914 |
rpiA |
-5.25 |
0.339968 |
76 -- 83 |
45 -- 52 |
ribose 5-phosphate isomerase constitutive |
|
_____________75_______84\n_____________|________|\n5'-GAA...GGGCG________UGCCU...CAC-3'\n______________AAAGGGGA\n______________||||:|||\n______________UUUCUCCU\n3'-UUU...GGCAG________UAAAG...ACA-5'\n_____________|________|\n_____________53_______44\n |
77 -- 83 |
45 -- 51 |
-8.77639 kcal/mol |
2.67801 kcal/mol |
0.850469 kcal/mol |
75 84@LB@ | |@LB@5'-GAA...GGGCG UGCCU...CAC-3'@LB@ AAAGGGGA@LB@ ||||:|||@LB@ UUUCUCCU@LB@3'-UUU...GGCAG UAAAG...ACA-5'@LB@ | |@LB@ 53 44@LB@@LB@@LB@Energy -5.25 kcal/mol@LB@Hybridization Energy -8.77639 kcal/mol@LB@Unfolding Energy - mRNA 2.67801 kcal/mol@LB@Unfolding Energy - sRNA 0.850469 kcal/mol@LB@@LB@Position - mRNA 76 -- 83@LB@Position - sRNA 45 -- 52@LB@Position Seed - mRNA 77 -- 83@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 57 |
0.01201 |
0.6177 |
b2959 |
yggL |
-9.33 |
0.056423 |
82 -- 92 |
47 -- 57 |
DUF469 family protein |
|
_____________81__________93\n_____________|___________|\n5'-GUA...AAAAC___________CAAUG...CAU-3'\n______________CUGUCAGAGAG\n______________|:||||:||||\n______________GGCAGUUUCUC\n3'-UUU...AACCG___________CUUAA...ACA-5'\n_____________|___________|\n_____________58__________46\n |
86 -- 92 |
47 -- 53 |
-15.1623 kcal/mol |
3.10124 kcal/mol |
2.73556 kcal/mol |
81 93@LB@ | |@LB@5'-GUA...AAAAC CAAUG...CAU-3'@LB@ CUGUCAGAGAG@LB@ |:||||:||||@LB@ GGCAGUUUCUC@LB@3'-UUU...AACCG CUUAA...ACA-5'@LB@ | |@LB@ 58 46@LB@@LB@@LB@Energy -9.33 kcal/mol@LB@Hybridization Energy -15.1623 kcal/mol@LB@Unfolding Energy - mRNA 3.10124 kcal/mol@LB@Unfolding Energy - sRNA 2.73556 kcal/mol@LB@@LB@Position - mRNA 82 -- 92@LB@Position - sRNA 47 -- 57@LB@Position Seed - mRNA 86 -- 92@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 182 |
0.03771 |
0.6177 |
b0397 |
sbcC |
-11.00 |
0.025718 |
84 -- 100 |
39 -- 56 |
exonuclease dsDNA ATP-dependent |
|
_____________83_________________101\n_____________|__________________|\n5'-GAA...CUCAG___________UG_____AUCGC...UUG-3'\n______________CGUCGAAGAGG___UUCA\n______________||||:||||||___||||\n______________GCAGUUUCUCC___AAGU\n3'-UUU...ACCGG___________UUA____AAAAA...ACA-5'\n_____________|__________________|\n_____________57_________________38\n |
88 -- 94 |
46 -- 52 |
-19.0672 kcal/mol |
6.9127 kcal/mol |
1.15786 kcal/mol |
83 101@LB@ | |@LB@5'-GAA...CUCAG UG AUCGC...UUG-3'@LB@ CGUCGAAGAGG UUCA@LB@ ||||:|||||| ||||@LB@ GCAGUUUCUCC AAGU@LB@3'-UUU...ACCGG UUA AAAAA...ACA-5'@LB@ | |@LB@ 57 38@LB@@LB@@LB@Energy -11.00 kcal/mol@LB@Hybridization Energy -19.0672 kcal/mol@LB@Unfolding Energy - mRNA 6.9127 kcal/mol@LB@Unfolding Energy - sRNA 1.15786 kcal/mol@LB@@LB@Position - mRNA 84 -- 100@LB@Position - sRNA 39 -- 56@LB@Position Seed - mRNA 88 -- 94@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 78 |
0.01669 |
0.6177 |
b2764 |
cysJ |
-9.29 |
0.057302 |
85 -- 99 |
53 -- 70 |
sulfite reductase alpha subunit flavoprotein |
|
_____________84_________________100\n_____________|__________________|\n5'-UUC...UUAGU__________________UUUAA...UUG-3'\n______________UAUCGCUAU___CCCGUC\n______________|||||||||___||||||\n______________AUAGCGAUA___GGGCAG\n3'-UUU...CGGUU_________ACC______UUUCU...ACA-5'\n_____________|__________________|\n_____________71_________________52\n |
87 -- 93 |
62 -- 68 |
-22.2411 kcal/mol |
2.01357 kcal/mol |
10.9351 kcal/mol |
84 100@LB@ | |@LB@5'-UUC...UUAGU UUUAA...UUG-3'@LB@ UAUCGCUAU CCCGUC@LB@ ||||||||| ||||||@LB@ AUAGCGAUA GGGCAG@LB@3'-UUU...CGGUU ACC UUUCU...ACA-5'@LB@ | |@LB@ 71 52@LB@@LB@@LB@Energy -9.29 kcal/mol@LB@Hybridization Energy -22.2411 kcal/mol@LB@Unfolding Energy - mRNA 2.01357 kcal/mol@LB@Unfolding Energy - sRNA 10.9351 kcal/mol@LB@@LB@Position - mRNA 85 -- 99@LB@Position - sRNA 53 -- 70@LB@Position Seed - mRNA 87 -- 93@LB@Position Seed - sRNA 62 -- 68@LB@ |
| 119 |
0.02381 |
0.6177 |
b1434 |
ydcN |
-8.41 |
0.086264 |
87 -- 94 |
43 -- 50 |
putative DNA-binding transcriptional regulator |
|
_____________86_______95\n_____________|________|\n5'-CGG...UGGGU________AGAAA...CUA-3'\n______________GGAGGAAU\n______________:|||||||\n______________UCUCCUUA\n3'-UUU...CAGUU________AAGUA...ACA-5'\n_____________|________|\n_____________51_______42\n |
88 -- 94 |
43 -- 49 |
-10.2233 kcal/mol |
0.967994 kcal/mol |
0.845564 kcal/mol |
86 95@LB@ | |@LB@5'-CGG...UGGGU AGAAA...CUA-3'@LB@ GGAGGAAU@LB@ :|||||||@LB@ UCUCCUUA@LB@3'-UUU...CAGUU AAGUA...ACA-5'@LB@ | |@LB@ 51 42@LB@@LB@@LB@Energy -8.41 kcal/mol@LB@Hybridization Energy -10.2233 kcal/mol@LB@Unfolding Energy - mRNA 0.967994 kcal/mol@LB@Unfolding Energy - sRNA 0.845564 kcal/mol@LB@@LB@Position - mRNA 87 -- 94@LB@Position - sRNA 43 -- 50@LB@Position Seed - mRNA 88 -- 94@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 81 |
0.01751 |
0.6177 |
b2741 |
rpoS |
-9.52 |
0.051528 |
88 -- 101 |
44 -- 56 |
RNA polymerase sigma S (sigma 38) factor |
|
_____________87_____________102\n_____________|______________|\n5'-CGG...AAAUU_____C________AUCCG...AGG-3'\n______________CGUUA_AAGGGGAA\n______________|||:|_|||:||||\n______________GCAGU_UUCUCCUU\n3'-UUU...ACCGG______________AAAGU...ACA-5'\n_____________|______________|\n_____________57_____________43\n |
95 -- 101 |
44 -- 50 |
-13.0318 kcal/mol |
2.56318 kcal/mol |
0.948902 kcal/mol |
87 102@LB@ | |@LB@5'-CGG...AAAUU C AUCCG...AGG-3'@LB@ CGUUA AAGGGGAA@LB@ |||:| |||:||||@LB@ GCAGU UUCUCCUU@LB@3'-UUU...ACCGG AAAGU...ACA-5'@LB@ | |@LB@ 57 43@LB@@LB@@LB@Energy -9.52 kcal/mol@LB@Hybridization Energy -13.0318 kcal/mol@LB@Unfolding Energy - mRNA 2.56318 kcal/mol@LB@Unfolding Energy - sRNA 0.948902 kcal/mol@LB@@LB@Position - mRNA 88 -- 101@LB@Position - sRNA 44 -- 56@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 44 -- 50@LB@ |
