167 |
0.03387 |
0.6177 |
b3980 |
tufB |
-7.70 |
0.119070 |
183 -- 194 |
44 -- 55 |
translation elongation factor EF-Tu 2 |
b3339 |
_____________182__________195\n_____________|____________|\n5'-UCC...UCCGU___UU_______CAAUC...CUA-3'\n______________GUC__AGAGGGA\n______________|||__|||||:|\n______________CAG__UCUCCUU\n3'-UUU...CCGGG___UU_______AAAGU...ACA-5'\n_____________|____________|\n_____________56___________43\n |
188 -- 194 |
44 -- 50 |
-14.3886 kcal/mol |
5.74361 kcal/mol |
0.941432 kcal/mol |
182 195@LB@ | |@LB@5'-UCC...UCCGU UU CAAUC...CUA-3'@LB@ GUC AGAGGGA@LB@ ||| |||||:|@LB@ CAG UCUCCUU@LB@3'-UUU...CCGGG UU AAAGU...ACA-5'@LB@ | |@LB@ 56 43@LB@@LB@@LB@Energy -7.70 kcal/mol@LB@Hybridization Energy -14.3886 kcal/mol@LB@Unfolding Energy - mRNA 5.74361 kcal/mol@LB@Unfolding Energy - sRNA 0.941432 kcal/mol@LB@@LB@Position - mRNA 183 -- 194@LB@Position - sRNA 44 -- 55@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 44 -- 50@LB@ |
168 |
0.03398 |
0.6177 |
b0321 |
yahG |
-8.56 |
0.080369 |
183 -- 192 |
44 -- 53 |
DUF1116 family protein |
b4572 |
_____________182________193\n_____________|__________|\n5'-AUC...AUCUG__________GAAGC...AAC-3'\n______________CAAAGGGGAG\n______________|||||:|||:\n______________GUUUCUCCUU\n3'-UUU...GGGCA__________AAAGU...ACA-5'\n_____________|__________|\n_____________54_________43\n |
186 -- 192 |
44 -- 50 |
-12.9704 kcal/mol |
3.47901 kcal/mol |
0.927997 kcal/mol |
182 193@LB@ | |@LB@5'-AUC...AUCUG GAAGC...AAC-3'@LB@ CAAAGGGGAG@LB@ |||||:|||:@LB@ GUUUCUCCUU@LB@3'-UUU...GGGCA AAAGU...ACA-5'@LB@ | |@LB@ 54 43@LB@@LB@@LB@Energy -8.56 kcal/mol@LB@Hybridization Energy -12.9704 kcal/mol@LB@Unfolding Energy - mRNA 3.47901 kcal/mol@LB@Unfolding Energy - sRNA 0.927997 kcal/mol@LB@@LB@Position - mRNA 183 -- 192@LB@Position - sRNA 44 -- 53@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 44 -- 50@LB@ |
9 |
0.001801 |
0.593 |
b1276 |
acnA |
-10.22 |
0.037037 |
184 -- 198 |
44 -- 55 |
aconitate hydratase 1; aconitase A |
|
_____________183_____________199\n_____________|_______________|\n5'-CUU...ACCCU____UUA________CUAUG...GCG-3'\n______________GUCA___AGGAGGAG\n______________||||___|:|||||:\n______________CAGU___UUCUCCUU\n3'-UUU...CCGGG_______________AAAGU...ACA-5'\n_____________|_______________|\n_____________56______________43\n |
192 -- 198 |
44 -- 50 |
-13.3918 kcal/mol |
2.22696 kcal/mol |
0.941432 kcal/mol |
183 199@LB@ | |@LB@5'-CUU...ACCCU UUA CUAUG...GCG-3'@LB@ GUCA AGGAGGAG@LB@ |||| |:|||||:@LB@ CAGU UUCUCCUU@LB@3'-UUU...CCGGG AAAGU...ACA-5'@LB@ | |@LB@ 56 43@LB@@LB@@LB@Energy -10.22 kcal/mol@LB@Hybridization Energy -13.3918 kcal/mol@LB@Unfolding Energy - mRNA 2.22696 kcal/mol@LB@Unfolding Energy - sRNA 0.941432 kcal/mol@LB@@LB@Position - mRNA 184 -- 198@LB@Position - sRNA 44 -- 55@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 44 -- 50@LB@ |
20 |
0.00399 |
0.5992 |
b4175 |
hflC |
-10.54 |
0.031960 |
184 -- 196 |
43 -- 56 |
HflB protease modulator specific for phage lambda cII repressor |
|
_____________183____________197\n_____________|______________|\n5'-UUA...ACCAG______________AACGA...GUU-3'\n______________CGUCAGGG_GGAAU\n______________|||||::|_|||||\n______________GCAGUUUC_CCUUA\n3'-UUU...ACCGG________U_____AAGUA...ACA-5'\n_____________|______________|\n_____________57_____________42\n |
185 -- 191 |
49 -- 55 |
-15.8123 kcal/mol |
4.32193 kcal/mol |
0.953958 kcal/mol |
183 197@LB@ | |@LB@5'-UUA...ACCAG AACGA...GUU-3'@LB@ CGUCAGGG GGAAU@LB@ |||||::| |||||@LB@ GCAGUUUC CCUUA@LB@3'-UUU...ACCGG U AAGUA...ACA-5'@LB@ | |@LB@ 57 42@LB@@LB@@LB@Energy -10.54 kcal/mol@LB@Hybridization Energy -15.8123 kcal/mol@LB@Unfolding Energy - mRNA 4.32193 kcal/mol@LB@Unfolding Energy - sRNA 0.953958 kcal/mol@LB@@LB@Position - mRNA 184 -- 196@LB@Position - sRNA 43 -- 56@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 49 -- 55@LB@ |
29 |
0.005664 |
0.6127 |
b3831 |
udp |
-8.88 |
0.069383 |
184 -- 196 |
42 -- 54 |
uridine phosphorylase |
|
_____________183___________197\n_____________|_____________|\n5'-AUC...CCGAU___C_________GUAUA...AGA-3'\n______________UCA_AGAGGAGUU\n______________|||_||||||:||\n______________AGU_UCUCCUUAA\n3'-UUU...CGGGC___U_________AGUAA...ACA-5'\n_____________|_____________|\n_____________55____________41\n |
190 -- 196 |
42 -- 48 |
-14.4874 kcal/mol |
4.66075 kcal/mol |
0.945538 kcal/mol |
183 197@LB@ | |@LB@5'-AUC...CCGAU C GUAUA...AGA-3'@LB@ UCA AGAGGAGUU@LB@ ||| ||||||:||@LB@ AGU UCUCCUUAA@LB@3'-UUU...CGGGC U AGUAA...ACA-5'@LB@ | |@LB@ 55 41@LB@@LB@@LB@Energy -8.88 kcal/mol@LB@Hybridization Energy -14.4874 kcal/mol@LB@Unfolding Energy - mRNA 4.66075 kcal/mol@LB@Unfolding Energy - sRNA 0.945538 kcal/mol@LB@@LB@Position - mRNA 184 -- 196@LB@Position - sRNA 42 -- 54@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 42 -- 48@LB@ |
34 |
0.007003 |
0.6129 |
b4199 |
yjfY |
-12.43 |
0.013073 |
184 -- 195 |
46 -- 57 |
YhcN family protein periplasmic |
|
_____________183__________196\n_____________|____________|\n5'-AGG...GUCAG____________UAUCU...ACG-3'\n______________CCGUCGAGGAGG\n______________|||||:|:||||\n______________GGCAGUUUCUCC\n3'-UUU...AACCG____________UUAAA...ACA-5'\n_____________|____________|\n_____________58___________45\n |
189 -- 195 |
46 -- 52 |
-19.9606 kcal/mol |
4.79886 kcal/mol |
2.7365 kcal/mol |
183 196@LB@ | |@LB@5'-AGG...GUCAG UAUCU...ACG-3'@LB@ CCGUCGAGGAGG@LB@ |||||:|:||||@LB@ GGCAGUUUCUCC@LB@3'-UUU...AACCG UUAAA...ACA-5'@LB@ | |@LB@ 58 45@LB@@LB@@LB@Energy -12.43 kcal/mol@LB@Hybridization Energy -19.9606 kcal/mol@LB@Unfolding Energy - mRNA 4.79886 kcal/mol@LB@Unfolding Energy - sRNA 2.7365 kcal/mol@LB@@LB@Position - mRNA 184 -- 195@LB@Position - sRNA 46 -- 57@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 46 -- 52@LB@ |
43 |
0.008509 |
0.6129 |
b4322 |
uxuA |
-11.91 |
0.016653 |
184 -- 195 |
44 -- 55 |
mannonate hydrolase |
|
_____________183__________196\n_____________|____________|\n5'-CAU...ACUAU__G_________AAAUC...AUA-3'\n______________GU_AAAGAGGAA\n______________||_|||||||||\n______________CA_UUUCUCCUU\n3'-UUU...CCGGG__G_________AAAGU...ACA-5'\n_____________|____________|\n_____________56___________43\n |
189 -- 195 |
44 -- 50 |
-15.5118 kcal/mol |
2.65561 kcal/mol |
0.941432 kcal/mol |
183 196@LB@ | |@LB@5'-CAU...ACUAU G AAAUC...AUA-3'@LB@ GU AAAGAGGAA@LB@ || |||||||||@LB@ CA UUUCUCCUU@LB@3'-UUU...CCGGG G AAAGU...ACA-5'@LB@ | |@LB@ 56 43@LB@@LB@@LB@Energy -11.91 kcal/mol@LB@Hybridization Energy -15.5118 kcal/mol@LB@Unfolding Energy - mRNA 2.65561 kcal/mol@LB@Unfolding Energy - sRNA 0.941432 kcal/mol@LB@@LB@Position - mRNA 184 -- 195@LB@Position - sRNA 44 -- 55@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 44 -- 50@LB@ |
44 |
0.008636 |
0.6129 |
b3317 |
rplB |
-9.78 |
0.045660 |
184 -- 194 |
43 -- 55 |
50S ribosomal subunit protein L2 |
|
_____________183___________195\n_____________|_____________|\n5'-GCA...AGUAA_____________AAUAC...UGC-3'\n______________GUC__GGAGGAGU\n______________|||__:|||||:|\n______________CAG__UCUCCUUA\n3'-UUU...CCGGG___UU________AAGUA...ACA-5'\n_____________|_____________|\n_____________56____________42\n |
188 -- 194 |
43 -- 49 |
-13.3143 kcal/mol |
2.58995 kcal/mol |
0.946481 kcal/mol |
183 195@LB@ | |@LB@5'-GCA...AGUAA AAUAC...UGC-3'@LB@ GUC GGAGGAGU@LB@ ||| :|||||:|@LB@ CAG UCUCCUUA@LB@3'-UUU...CCGGG UU AAGUA...ACA-5'@LB@ | |@LB@ 56 42@LB@@LB@@LB@Energy -9.78 kcal/mol@LB@Hybridization Energy -13.3143 kcal/mol@LB@Unfolding Energy - mRNA 2.58995 kcal/mol@LB@Unfolding Energy - sRNA 0.946481 kcal/mol@LB@@LB@Position - mRNA 184 -- 194@LB@Position - sRNA 43 -- 55@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 43 -- 49@LB@ |
66 |
0.01414 |
0.6177 |
b0440 |
hupB |
-10.30 |
0.035643 |
184 -- 193 |
44 -- 53 |
HU DNA-binding transcriptional regulator beta subunit |
|
_____________183________194\n_____________|__________|\n5'-CGC...AAUUA__________GAGAA...CUG-3'\n______________UAAAGAGGAA\n______________:|||||||||\n______________GUUUCUCCUU\n3'-UUU...GGGCA__________AAAGU...ACA-5'\n_____________|__________|\n_____________54_________43\n |
187 -- 193 |
44 -- 50 |
-11.552 kcal/mol |
0.319105 kcal/mol |
0.927997 kcal/mol |
183 194@LB@ | |@LB@5'-CGC...AAUUA GAGAA...CUG-3'@LB@ UAAAGAGGAA@LB@ :|||||||||@LB@ GUUUCUCCUU@LB@3'-UUU...GGGCA AAAGU...ACA-5'@LB@ | |@LB@ 54 43@LB@@LB@@LB@Energy -10.30 kcal/mol@LB@Hybridization Energy -11.552 kcal/mol@LB@Unfolding Energy - mRNA 0.319105 kcal/mol@LB@Unfolding Energy - sRNA 0.927997 kcal/mol@LB@@LB@Position - mRNA 184 -- 193@LB@Position - sRNA 44 -- 53@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 44 -- 50@LB@ |
79 |
0.01695 |
0.6177 |
b0435 |
bolA |
-9.02 |
0.064980 |
184 -- 202 |
38 -- 55 |
stationary-phase morphogene transcriptional repressor for mreB; also regulator for dacA dacC and ampC |
|
_____________183_________________203\n_____________|___________________|\n5'-UGA...GCGUU___G______AU_______GAUGA...CCG-3'\n______________GUC_GAGGAG__AUUUCAU\n______________|||_:|:|||__|||||||\n______________CAG_UUUCUC__UAAAGUA\n3'-UUU...CCGGG__________CU_______AAAAA...ACA-5'\n_____________|___________________|\n_____________56__________________37\n |
196 -- 202 |
38 -- 44 |
-15.2358 kcal/mol |
5.04311 kcal/mol |
1.17036 kcal/mol |
183 203@LB@ | |@LB@5'-UGA...GCGUU G AU GAUGA...CCG-3'@LB@ GUC GAGGAG AUUUCAU@LB@ ||| :|:||| |||||||@LB@ CAG UUUCUC UAAAGUA@LB@3'-UUU...CCGGG CU AAAAA...ACA-5'@LB@ | |@LB@ 56 37@LB@@LB@@LB@Energy -9.02 kcal/mol@LB@Hybridization Energy -15.2358 kcal/mol@LB@Unfolding Energy - mRNA 5.04311 kcal/mol@LB@Unfolding Energy - sRNA 1.17036 kcal/mol@LB@@LB@Position - mRNA 184 -- 202@LB@Position - sRNA 38 -- 55@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 38 -- 44@LB@ |