| 103 |
0.02062 |
0.6177 |
b1332 |
ynaJ |
-7.81 |
0.113347 |
36 -- 54 |
40 -- 55 |
DUF2534 family putative inner membrane protein |
|
_____________35__________________55\n_____________|___________________|\n5'-AAA...ACUGA____GCC____A_______CCCGC...CCA-3'\n______________GUCA___GAGA_GAAUUUC\n______________||||___:|||_|||||||\n______________CAGU___UUCU_CUUAAAG\n3'-UUU...CCGGG___________C_______UAAAA...ACA-5'\n_____________|___________________|\n_____________56__________________39\n |
48 -- 54 |
40 -- 46 |
-13.2524 kcal/mol |
4.4222 kcal/mol |
1.01784 kcal/mol |
35 55@LB@ | |@LB@5'-AAA...ACUGA GCC A CCCGC...CCA-3'@LB@ GUCA GAGA GAAUUUC@LB@ |||| :||| |||||||@LB@ CAGU UUCU CUUAAAG@LB@3'-UUU...CCGGG C UAAAA...ACA-5'@LB@ | |@LB@ 56 39@LB@@LB@@LB@Energy -7.81 kcal/mol@LB@Hybridization Energy -13.2524 kcal/mol@LB@Unfolding Energy - mRNA 4.4222 kcal/mol@LB@Unfolding Energy - sRNA 1.01784 kcal/mol@LB@@LB@Position - mRNA 36 -- 54@LB@Position - sRNA 40 -- 55@LB@Position Seed - mRNA 48 -- 54@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 90 |
0.01863 |
0.6177 |
b0659 |
ybeY |
-9.29 |
0.057244 |
42 -- 51 |
47 -- 56 |
ssRNA-specific endoribonuclease; 16S rRNA 3' end maturation and quality control co-endoribonuclease working with RNase R; rRNA transcription antitermination factor |
|
_____________41_________52\n_____________|__________|\n5'-ACU...GCCGA__________AUCAG...CGC-3'\n______________UGUCGAAGAG\n______________:|||:|||||\n______________GCAGUUUCUC\n3'-UUU...ACCGG__________CUUAA...ACA-5'\n_____________|__________|\n_____________57_________46\n |
45 -- 51 |
47 -- 53 |
-13.0692 kcal/mol |
2.86289 kcal/mol |
0.911734 kcal/mol |
41 52@LB@ | |@LB@5'-ACU...GCCGA AUCAG...CGC-3'@LB@ UGUCGAAGAG@LB@ :|||:|||||@LB@ GCAGUUUCUC@LB@3'-UUU...ACCGG CUUAA...ACA-5'@LB@ | |@LB@ 57 46@LB@@LB@@LB@Energy -9.29 kcal/mol@LB@Hybridization Energy -13.0692 kcal/mol@LB@Unfolding Energy - mRNA 2.86289 kcal/mol@LB@Unfolding Energy - sRNA 0.911734 kcal/mol@LB@@LB@Position - mRNA 42 -- 51@LB@Position - sRNA 47 -- 56@LB@Position Seed - mRNA 45 -- 51@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 10 |
0.001925 |
0.593 |
b2910 |
zapA |
-12.97 |
0.010115 |
44 -- 65 |
38 -- 56 |
FtsZ stabilizer |
|
_____________43_____________________66\n_____________|______________________|\n5'-GUU...UUCGU______AG________A_____GAUAU...AUC-3'\n______________CGUCAA__GGAGGAAU_UUCAU\n______________||||||__:|||||||_|||||\n______________GCAGUU__UCUCCUUA_AAGUA\n3'-UUU...ACCGG______________________AAAAA...ACA-5'\n_____________|______________________|\n_____________57_____________________37\n |
53 -- 59 |
43 -- 49 |
-19.9082 kcal/mol |
5.76295 kcal/mol |
1.17918 kcal/mol |
43 66@LB@ | |@LB@5'-GUU...UUCGU AG A GAUAU...AUC-3'@LB@ CGUCAA GGAGGAAU UUCAU@LB@ |||||| :||||||| |||||@LB@ GCAGUU UCUCCUUA AAGUA@LB@3'-UUU...ACCGG AAAAA...ACA-5'@LB@ | |@LB@ 57 37@LB@@LB@@LB@Energy -12.97 kcal/mol@LB@Hybridization Energy -19.9082 kcal/mol@LB@Unfolding Energy - mRNA 5.76295 kcal/mol@LB@Unfolding Energy - sRNA 1.17918 kcal/mol@LB@@LB@Position - mRNA 44 -- 65@LB@Position - sRNA 38 -- 56@LB@Position Seed - mRNA 53 -- 59@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 68 |
0.01422 |
0.6177 |
b3826 |
yigL |
-7.04 |
0.159921 |
44 -- 50 |
49 -- 55 |
pyridoxal phosphate phosphatase |
|
_____________43______51\n_____________|_______|\n5'-GCA...AUCCU_______GAGGA...CGC-3'\n______________GUCGAAG\n______________|||:|||\n______________CAGUUUC\n3'-UUU...CCGGG_______UCCUU...ACA-5'\n_____________|_______|\n_____________56______48\n |
44 -- 50 |
49 -- 55 |
-7.68974 kcal/mol |
0.331193 kcal/mol |
0.314364 kcal/mol |
43 51@LB@ | |@LB@5'-GCA...AUCCU GAGGA...CGC-3'@LB@ GUCGAAG@LB@ |||:|||@LB@ CAGUUUC@LB@3'-UUU...CCGGG UCCUU...ACA-5'@LB@ | |@LB@ 56 48@LB@@LB@@LB@Energy -7.04 kcal/mol@LB@Hybridization Energy -7.68974 kcal/mol@LB@Unfolding Energy - mRNA 0.331193 kcal/mol@LB@Unfolding Energy - sRNA 0.314364 kcal/mol@LB@@LB@Position - mRNA 44 -- 50@LB@Position - sRNA 49 -- 55@LB@Position Seed - mRNA 44 -- 50@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 94 |
0.01884 |
0.6177 |
b2048 |
cpsG |
-10.80 |
0.028164 |
47 -- 56 |
45 -- 54 |
phosphomannomutase |
|
_____________46_________57\n_____________|__________|\n5'-GGG...UUAUC__________UGAUG...GCG-3'\n______________UCGAAGAGGA\n______________||:|||||||\n______________AGUUUCUCCU\n3'-UUU...CGGGC__________UAAAG...ACA-5'\n_____________|__________|\n_____________55_________44\n |
50 -- 56 |
45 -- 51 |
-14.144 kcal/mol |
2.41054 kcal/mol |
0.929144 kcal/mol |
46 57@LB@ | |@LB@5'-GGG...UUAUC UGAUG...GCG-3'@LB@ UCGAAGAGGA@LB@ ||:|||||||@LB@ AGUUUCUCCU@LB@3'-UUU...CGGGC UAAAG...ACA-5'@LB@ | |@LB@ 55 44@LB@@LB@@LB@Energy -10.80 kcal/mol@LB@Hybridization Energy -14.144 kcal/mol@LB@Unfolding Energy - mRNA 2.41054 kcal/mol@LB@Unfolding Energy - sRNA 0.929144 kcal/mol@LB@@LB@Position - mRNA 47 -- 56@LB@Position - sRNA 45 -- 54@LB@Position Seed - mRNA 50 -- 56@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 114 |
0.02277 |
0.6177 |
b4077 |
gltP |
-4.92 |
0.386213 |
48 -- 56 |
47 -- 55 |
glutamate/aspartate:proton symporter |
|
_____________47________57\n_____________|_________|\n5'-GCC...CUGUU_________UUGCG...GCG-3'\n______________GUUAAAGGG\n______________||:||||:|\n______________CAGUUUCUC\n3'-UUU...CCGGG_________CUUAA...ACA-5'\n_____________|_________|\n_____________56________46\n |
50 -- 56 |
47 -- 53 |
-9.45392 kcal/mol |
3.63887 kcal/mol |
0.899516 kcal/mol |
47 57@LB@ | |@LB@5'-GCC...CUGUU UUGCG...GCG-3'@LB@ GUUAAAGGG@LB@ ||:||||:|@LB@ CAGUUUCUC@LB@3'-UUU...CCGGG CUUAA...ACA-5'@LB@ | |@LB@ 56 46@LB@@LB@@LB@Energy -4.92 kcal/mol@LB@Hybridization Energy -9.45392 kcal/mol@LB@Unfolding Energy - mRNA 3.63887 kcal/mol@LB@Unfolding Energy - sRNA 0.899516 kcal/mol@LB@@LB@Position - mRNA 48 -- 56@LB@Position - sRNA 47 -- 55@LB@Position Seed - mRNA 50 -- 56@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 127 |
0.0247 |
0.6177 |
b3306 |
rpsH |
-8.61 |
0.078593 |
53 -- 64 |
46 -- 57 |
30S ribosomal subunit protein S8 |
|
_____________52___________65\n_____________|____________|\n5'-AGC...CGCUG________C___UCGUC...AAG-3'\n______________CCGUCAAA_AGG\n______________||||||||_|||\n______________GGCAGUUU_UCC\n3'-UUU...AACCG________C___UUAAA...ACA-5'\n_____________|____________|\n_____________58___________45\n |
54 -- 60 |
50 -- 56 |
-14.2597 kcal/mol |
2.91134 kcal/mol |
2.7365 kcal/mol |
52 65@LB@ | |@LB@5'-AGC...CGCUG C UCGUC...AAG-3'@LB@ CCGUCAAA AGG@LB@ |||||||| |||@LB@ GGCAGUUU UCC@LB@3'-UUU...AACCG C UUAAA...ACA-5'@LB@ | |@LB@ 58 45@LB@@LB@@LB@Energy -8.61 kcal/mol@LB@Hybridization Energy -14.2597 kcal/mol@LB@Unfolding Energy - mRNA 2.91134 kcal/mol@LB@Unfolding Energy - sRNA 2.7365 kcal/mol@LB@@LB@Position - mRNA 53 -- 64@LB@Position - sRNA 46 -- 57@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 88 |
0.01799 |
0.6177 |
b0415 |
ribE |
-8.66 |
0.076826 |
57 -- 64 |
47 -- 54 |
riboflavin synthase beta chain |
|
_____________56_______65\n_____________|________|\n5'-CGG...UAAAU________AUACG...GUG-3'\n______________UCAAAGAG\n______________||||||||\n______________AGUUUCUC\n3'-UUU...CGGGC________CUUAA...ACA-5'\n_____________|________|\n_____________55_______46\n |
58 -- 64 |
47 -- 53 |
-10.4141 kcal/mol |
0.855178 kcal/mol |
0.897871 kcal/mol |
56 65@LB@ | |@LB@5'-CGG...UAAAU AUACG...GUG-3'@LB@ UCAAAGAG@LB@ ||||||||@LB@ AGUUUCUC@LB@3'-UUU...CGGGC CUUAA...ACA-5'@LB@ | |@LB@ 55 46@LB@@LB@@LB@Energy -8.66 kcal/mol@LB@Hybridization Energy -10.4141 kcal/mol@LB@Unfolding Energy - mRNA 0.855178 kcal/mol@LB@Unfolding Energy - sRNA 0.897871 kcal/mol@LB@@LB@Position - mRNA 57 -- 64@LB@Position - sRNA 47 -- 54@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 6 |
0.0006545 |
0.351 |
b1857 |
znuA |
-11.78 |
0.017745 |
58 -- 67 |
45 -- 54 |
zinc ABC transporter periplasmic binding protein |
|
_____________57_________68\n_____________|__________|\n5'-GCG...ACACA__________CGCGG...AAC-3'\n______________UCAGAGAGGA\n______________|||:||||||\n______________AGUUUCUCCU\n3'-UUU...CGGGC__________UAAAG...ACA-5'\n_____________|__________|\n_____________55_________44\n |
61 -- 67 |
45 -- 51 |
-14.7441 kcal/mol |
2.03423 kcal/mol |
0.929144 kcal/mol |
57 68@LB@ | |@LB@5'-GCG...ACACA CGCGG...AAC-3'@LB@ UCAGAGAGGA@LB@ |||:||||||@LB@ AGUUUCUCCU@LB@3'-UUU...CGGGC UAAAG...ACA-5'@LB@ | |@LB@ 55 44@LB@@LB@@LB@Energy -11.78 kcal/mol@LB@Hybridization Energy -14.7441 kcal/mol@LB@Unfolding Energy - mRNA 2.03423 kcal/mol@LB@Unfolding Energy - sRNA 0.929144 kcal/mol@LB@@LB@Position - mRNA 58 -- 67@LB@Position - sRNA 45 -- 54@LB@Position Seed - mRNA 61 -- 67@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 140 |
0.02703 |
0.6177 |
b3447 |
ggt |
-5.41 |
0.319095 |
66 -- 81 |
38 -- 54 |
gamma-glutamyltranspeptidase |
|
_____________65________________82\n_____________|_________________|\n5'-GUU...AAGAA________UC_______CGCGU...CGU-3'\n______________UCAGA_AG__GUUUCAU\n______________|||:|_||__:||||||\n______________AGUUU_UC__UAAAGUA\n3'-UUU...CGGGC_____C__CU_______AAAAA...ACA-5'\n_____________|_________________|\n_____________55________________37\n |
75 -- 81 |
38 -- 44 |
-8.61894 kcal/mol |
2.03989 kcal/mol |
1.17036 kcal/mol |
65 82@LB@ | |@LB@5'-GUU...AAGAA UC CGCGU...CGU-3'@LB@ UCAGA AG GUUUCAU@LB@ |||:| || :||||||@LB@ AGUUU UC UAAAGUA@LB@3'-UUU...CGGGC C CU AAAAA...ACA-5'@LB@ | |@LB@ 55 37@LB@@LB@@LB@Energy -5.41 kcal/mol@LB@Hybridization Energy -8.61894 kcal/mol@LB@Unfolding Energy - mRNA 2.03989 kcal/mol@LB@Unfolding Energy - sRNA 1.17036 kcal/mol@LB@@LB@Position - mRNA 66 -- 81@LB@Position - sRNA 38 -- 54@LB@Position Seed - mRNA 75 -- 81@LB@Position Seed - sRNA 38 -- 44@LB@ |
