| 167 |
0.01932 |
0.3812 |
b2912 |
fau |
-13.57 |
0.053124 |
153 -- 189 |
109 -- 152 |
5-formyltetrahydrofolate cyclo-ligase family protein |
|
_____________152__________190\n_____________|____________|\n5'-GAA...UGAGC____________GUCCG...UGG-3'\n______________AUGCUCGGUC_C\n______________||:|||:|||_|\n______________UAUGAGUCAG_G\n3'-UUU...GUGGU__________U_UGUAC...UAG-5'\n_____________|____________|\n_____________153__________108\n |
31 -- 37 |
172 -- 178 |
-13.9133 kcal/mol |
3.57919 kcal/mol |
0.28482 kcal/mol |
152 190@LB@ | |@LB@5'-GAA...UGAGC GUCCG...UGG-3'@LB@ AUGCUCGGUC C@LB@ ||:|||:||| |@LB@ UAUGAGUCAG G@LB@3'-UUU...GUGGU U UGUAC...UAG-5'@LB@ | |@LB@ 153 108@LB@@LB@@LB@Energy -13.57 kcal/mol@LB@Hybridization Energy -13.9133 kcal/mol@LB@Unfolding Energy - mRNA 3.57919 kcal/mol@LB@Unfolding Energy - sRNA 0.28482 kcal/mol@LB@@LB@Position - mRNA 153 -- 189@LB@Position - sRNA 109 -- 152@LB@Position Seed - mRNA 31 -- 37@LB@Position Seed - sRNA 172 -- 178@LB@ |
| 95 |
0.01047 |
0.3575 |
b4232 |
fbp |
-15.00 |
0.027086 |
59 -- 98 |
140 -- 173 |
fructose-1 6-bisphosphatase I |
|
_____________58_______________________________________________99\n_____________|________________________________________________|\n5'-AAA...CUGCC_____UU____________U_________G_GAAAC__A_________AAUCC...CCA-3'\n______________GCUCA__UUACGCAU_AUG_CGGGCAAGU_A_____GC_UUUCAGGAU\n______________:||||__|:||:|||_|||_|:|||||||_|_____:|_||||||:||\n______________UGAGU__AGUGUGUA_UAC_GUCCGUUCA_U_____UG_AAAGUCUUA\n3'-UUU...GGUUA_____C_________C_____________G__________________ACGCC...UAG-5'\n_____________|________________________________________________|\n_____________174______________________________________________139\n |
92 -- 98 |
140 -- 146 |
-39.7088 kcal/mol |
14.0477 kcal/mol |
8.83532 kcal/mol |
58 99@LB@ | |@LB@5'-AAA...CUGCC UU U G GAAAC A AAUCC...CCA-3'@LB@ GCUCA UUACGCAU AUG CGGGCAAGU A GC UUUCAGGAU@LB@ :|||| |:||:||| ||| |:||||||| | :| ||||||:||@LB@ UGAGU AGUGUGUA UAC GUCCGUUCA U UG AAAGUCUUA@LB@3'-UUU...GGUUA C C G ACGCC...UAG-5'@LB@ | |@LB@ 174 139@LB@@LB@@LB@Energy -15.00 kcal/mol@LB@Hybridization Energy -39.7088 kcal/mol@LB@Unfolding Energy - mRNA 14.0477 kcal/mol@LB@Unfolding Energy - sRNA 8.83532 kcal/mol@LB@@LB@Position - mRNA 59 -- 98@LB@Position - sRNA 140 -- 173@LB@Position Seed - mRNA 92 -- 98@LB@Position Seed - sRNA 140 -- 146@LB@ |
| 3 |
8.668e-05 |
0.08442 |
b3892 |
fdoI |
-15.80 |
0.018551 |
255 -- 278 |
1 -- 22 |
formate dehydrogenase-O cytochrome b556 subunit |
|
_____________254_________________279\n_____________|___________________|\n5'-CCA...UGGAU____G___UC_________CUGGC...UGG-3'\n______________CACC_CCU__UGCUUCAUC\n______________||||_|||__|||||||||\n______________GUGG_GGA__ACGAAGUAG\n3'-UUU...ACCCC____G______________-5'\n_____________|__________________|\n_____________23_________________1\n |
272 -- 278 |
1 -- 7 |
-24.2792 kcal/mol |
4.44512 kcal/mol |
7.16879 kcal/mol |
254 279@LB@ | |@LB@5'-CCA...UGGAU G UC CUGGC...UGG-3'@LB@ CACC CCU UGCUUCAUC@LB@ |||| ||| |||||||||@LB@ GUGG GGA ACGAAGUAG@LB@3'-UUU...ACCCC G -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -15.80 kcal/mol@LB@Hybridization Energy -24.2792 kcal/mol@LB@Unfolding Energy - mRNA 4.44512 kcal/mol@LB@Unfolding Energy - sRNA 7.16879 kcal/mol@LB@@LB@Position - mRNA 255 -- 278@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 272 -- 278@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 94 |
0.01043 |
0.3575 |
b4293 |
fecI |
-12.90 |
0.072974 |
203 -- 229 |
60 -- 87 |
RNA polymerase sigma-19 factor fec operon-specific; ECF sigma factor |
|
_____________202_______________________230\n_____________|_________________________|\n5'-AAU...AUCCC__________UAC_____UA_____UUAGA...AGU-3'\n______________AUUUUAUACC____CUUA___ACAC\n______________||||||:|||____||:|___||||\n______________UAAAAUGUGG____GAGU___UGUG\n3'-UUU...CCCAC__________UUAU____CAG____UACUA...UAG-5'\n_____________|_________________________|\n_____________88________________________59\n |
66 -- 72 |
183 -- 189 |
-15.6606 kcal/mol |
1.17775 kcal/mol |
4.92862 kcal/mol |
202 230@LB@ | |@LB@5'-AAU...AUCCC UAC UA UUAGA...AGU-3'@LB@ AUUUUAUACC CUUA ACAC@LB@ ||||||:||| ||:| ||||@LB@ UAAAAUGUGG GAGU UGUG@LB@3'-UUU...CCCAC UUAU CAG UACUA...UAG-5'@LB@ | |@LB@ 88 59@LB@@LB@@LB@Energy -12.90 kcal/mol@LB@Hybridization Energy -15.6606 kcal/mol@LB@Unfolding Energy - mRNA 1.17775 kcal/mol@LB@Unfolding Energy - sRNA 4.92862 kcal/mol@LB@@LB@Position - mRNA 203 -- 229@LB@Position - sRNA 60 -- 87@LB@Position Seed - mRNA 66 -- 72@LB@Position Seed - sRNA 183 -- 189@LB@ |
| 29 |
0.002294 |
0.2633 |
b0624 |
flc |
-16.49 |
0.013425 |
233 -- 293 |
118 -- 176 |
fluoride efflux channel dual topology membrane protein |
|
_____________232_____________________294\n_____________|_______________________|\n5'-AAA...CGGCG_______UA______C_______AAUCA...UUC-3'\n______________UUACACU_____UCA_UCAUACA\n______________||||||:_____|||_|||:|||\n______________AAUGUGG_____AGU_AGUGUGU\n3'-UUU...ACUAA_______UUAUG___C_______ACUAC...UAG-5'\n_____________|_______________________|\n_____________177_____________________117\n |
172 -- 178 |
167 -- 173 |
-16.8792 kcal/mol |
2.93634 kcal/mol |
5.08824 kcal/mol |
232 294@LB@ | |@LB@5'-AAA...CGGCG UA C AAUCA...UUC-3'@LB@ UUACACU UCA UCAUACA@LB@ ||||||: ||| |||:|||@LB@ AAUGUGG AGU AGUGUGU@LB@3'-UUU...ACUAA UUAUG C ACUAC...UAG-5'@LB@ | |@LB@ 177 117@LB@@LB@@LB@Energy -16.49 kcal/mol@LB@Hybridization Energy -16.8792 kcal/mol@LB@Unfolding Energy - mRNA 2.93634 kcal/mol@LB@Unfolding Energy - sRNA 5.08824 kcal/mol@LB@@LB@Position - mRNA 233 -- 293@LB@Position - sRNA 118 -- 176@LB@Position Seed - mRNA 172 -- 178@LB@Position Seed - sRNA 167 -- 173@LB@ |
| 163 |
0.01822 |
0.376 |
b1073 |
flgB |
-9.73 |
0.308533 |
172 -- 220 |
24 -- 70 |
flagellar component of cell-proximal portion of basal-body rod |
|
_____________171_______221\n_____________|_________|\n5'-UGA...AACAU_________CG-3'\n______________CGCCAAUGC\n______________|:|||||:|\n______________GUGGUUAUG\n3'-UUU...AAAAU_________AGUCA...UAG-5'\n_____________|_________|\n_____________71________23\n |
292 -- 298 |
178 -- 184 |
-11.5881 kcal/mol |
1.63005 kcal/mol |
3.31726 kcal/mol |
171 221@LB@ | |@LB@5'-UGA...AACAU CG-3'@LB@ CGCCAAUGC@LB@ |:|||||:|@LB@ GUGGUUAUG@LB@3'-UUU...AAAAU AGUCA...UAG-5'@LB@ | |@LB@ 71 23@LB@@LB@@LB@Energy -9.73 kcal/mol@LB@Hybridization Energy -11.5881 kcal/mol@LB@Unfolding Energy - mRNA 1.63005 kcal/mol@LB@Unfolding Energy - sRNA 3.31726 kcal/mol@LB@@LB@Position - mRNA 172 -- 220@LB@Position - sRNA 24 -- 70@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 178 -- 184@LB@ |
| 50 |
0.004849 |
0.3217 |
b1079 |
flgH |
-12.97 |
0.070541 |
130 -- 141 |
23 -- 34 |
flagellar protein of basal-body outer-membrane L ring |
|
_____________129____________________142\n_____________|______________________|\n5'-ACU...CGAUC__A_____CA____________ACUCU...GGG-3'\n______________AG_UGCUG__AAAACUGACGCA\n______________||_|||||__||||||||||||\n______________UC_ACGAC__UUUUGACUGCGU\n3'-UUU...UUUUA________UA____________ACCCC...UAG-5'\n_____________|______________________|\n_____________35_____________________22\n |
135 -- 141 |
23 -- 29 |
-26.3449 kcal/mol |
4.56982 kcal/mol |
12.5314 kcal/mol |
129 142@LB@ | |@LB@5'-ACU...CGAUC A CA ACUCU...GGG-3'@LB@ AG UGCUG AAAACUGACGCA@LB@ || ||||| ||||||||||||@LB@ UC ACGAC UUUUGACUGCGU@LB@3'-UUU...UUUUA UA ACCCC...UAG-5'@LB@ | |@LB@ 35 22@LB@@LB@@LB@Energy -12.97 kcal/mol@LB@Hybridization Energy -26.3449 kcal/mol@LB@Unfolding Energy - mRNA 4.56982 kcal/mol@LB@Unfolding Energy - sRNA 12.5314 kcal/mol@LB@@LB@Position - mRNA 130 -- 141@LB@Position - sRNA 23 -- 34@LB@Position Seed - mRNA 135 -- 141@LB@Position Seed - sRNA 23 -- 29@LB@ |
| 58 |
0.005664 |
0.3247 |
b1878 |
flhE |
-13.77 |
0.048330 |
266 -- 286 |
140 -- 162 |
proton seal during flagellar secretion |
|
_____________265_____________________287\n_____________|_______________________|\n5'-CGU...AUGUG__________AGUGUA_______UACGC...AUC-3'\n______________GCAGGCAAGU________GGAAU\n______________||||||||||________:||||\n______________CGUCCGUUCA________UCUUA\n3'-UUU...UACUA__________GUUGAAAG_____ACGCC...UAG-5'\n_____________|_______________________|\n_____________163_____________________139\n |
269 -- 275 |
153 -- 159 |
-20.7539 kcal/mol |
2.26514 kcal/mol |
7.696 kcal/mol |
265 287@LB@ | |@LB@5'-CGU...AUGUG AGUGUA UACGC...AUC-3'@LB@ GCAGGCAAGU GGAAU@LB@ |||||||||| :||||@LB@ CGUCCGUUCA UCUUA@LB@3'-UUU...UACUA GUUGAAAG ACGCC...UAG-5'@LB@ | |@LB@ 163 139@LB@@LB@@LB@Energy -13.77 kcal/mol@LB@Hybridization Energy -20.7539 kcal/mol@LB@Unfolding Energy - mRNA 2.26514 kcal/mol@LB@Unfolding Energy - sRNA 7.696 kcal/mol@LB@@LB@Position - mRNA 266 -- 286@LB@Position - sRNA 140 -- 162@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 153 -- 159@LB@ |
| 84 |
0.009006 |
0.3575 |
b1924 |
fliD |
-8.51 |
0.498321 |
24 -- 43 |
139 -- 158 |
flagellar filament capping protein |
|
_____________23_____________44\n_____________|______________|\n5'-CGU...UAAAA____C_________UUUUU...UUU-3'\n______________CAAC_UUUAGAAUU\n______________||||_||:||||||\n______________GUUG_AAGUCUUAA\n3'-UUU...GUUCA____A_________CGCCA...UAG-5'\n_____________|______________|\n_____________159____________138\n |
37 -- 43 |
139 -- 145 |
-11.0468 kcal/mol |
1.39956 kcal/mol |
1.83266 kcal/mol |
23 44@LB@ | |@LB@5'-CGU...UAAAA C UUUUU...UUU-3'@LB@ CAAC UUUAGAAUU@LB@ |||| ||:||||||@LB@ GUUG AAGUCUUAA@LB@3'-UUU...GUUCA A CGCCA...UAG-5'@LB@ | |@LB@ 159 138@LB@@LB@@LB@Energy -8.51 kcal/mol@LB@Hybridization Energy -11.0468 kcal/mol@LB@Unfolding Energy - mRNA 1.39956 kcal/mol@LB@Unfolding Energy - sRNA 1.83266 kcal/mol@LB@@LB@Position - mRNA 24 -- 43@LB@Position - sRNA 139 -- 158@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 139 -- 145@LB@ |
| 161 |
0.01797 |
0.3749 |
b1921 |
fliZ |
-13.03 |
0.068461 |
73 -- 137 |
125 -- 204 |
RpoS antagonist; putative regulator of FliA activity |
|
_____________72__________________________________________138\n_____________|___________________________________________|\n5'-UGC...GAGGU_______AU______G___C_G___________GC________UAUUA...AUC-3'\n______________CGGG_GA_____CGC_GGU_A_UCAGUUACACA_____CAGGC\n______________||||_||_____|:|_::|_|_|||||:|||||_____|||||\n______________GCCC_CU_____GUG_UUA_U_AGUCAGUGUGU_____GUCCG\n3'-UUU...CGACC____A__AAAAU___G_____G___________ACUAC_____UUCAG...UAG-5'\n_____________|___________________________________________|\n_____________205_________________________________________124\n |
105 -- 111 |
167 -- 173 |
-36.0631 kcal/mol |
8.93512 kcal/mol |
13.9606 kcal/mol |
72 138@LB@ | |@LB@5'-UGC...GAGGU AU G C G GC UAUUA...AUC-3'@LB@ CGGG GA CGC GGU A UCAGUUACACA CAGGC@LB@ |||| || |:| ::| | |||||:||||| |||||@LB@ GCCC CU GUG UUA U AGUCAGUGUGU GUCCG@LB@3'-UUU...CGACC A AAAAU G G ACUAC UUCAG...UAG-5'@LB@ | |@LB@ 205 124@LB@@LB@@LB@Energy -13.03 kcal/mol@LB@Hybridization Energy -36.0631 kcal/mol@LB@Unfolding Energy - mRNA 8.93512 kcal/mol@LB@Unfolding Energy - sRNA 13.9606 kcal/mol@LB@@LB@Position - mRNA 73 -- 137@LB@Position - sRNA 125 -- 204@LB@Position Seed - mRNA 105 -- 111@LB@Position Seed - sRNA 167 -- 173@LB@ |
