125 |
0.01377 |
0.3575 |
b2827 |
thyA |
-14.98 |
0.027366 |
100 -- 109 |
16 -- 25 |
thymidylate synthetase |
|
_____________99_____________________110\n_____________|______________________|\n5'-CAG...AAACA________A_____________AAAAG...AGA-3'\n______________GUAUUUAG__AC___UGAUGCA\n______________:||:|:||__||___|||||||\n______________UAUGAGUC__UG___ACUACGU\n3'-UUU...GUGGU________AG__UGU_______CCGUU...UAG-5'\n_____________|______________________|\n_____________26_____________________15\n |
220 -- 226 |
160 -- 166 |
-15.3976 kcal/mol |
3.04146 kcal/mol |
4.80633 kcal/mol |
99 110@LB@ | |@LB@5'-CAG...AAACA A AAAAG...AGA-3'@LB@ GUAUUUAG AC UGAUGCA@LB@ :||:|:|| || |||||||@LB@ UAUGAGUC UG ACUACGU@LB@3'-UUU...GUGGU AG UGU CCGUU...UAG-5'@LB@ | |@LB@ 26 15@LB@@LB@@LB@Energy -14.98 kcal/mol@LB@Hybridization Energy -15.3976 kcal/mol@LB@Unfolding Energy - mRNA 3.04146 kcal/mol@LB@Unfolding Energy - sRNA 4.80633 kcal/mol@LB@@LB@Position - mRNA 100 -- 109@LB@Position - sRNA 16 -- 25@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 160 -- 166@LB@ |
40 |
0.003515 |
0.2912 |
b0188 |
tilS |
-11.97 |
0.112782 |
278 -- 295 |
116 -- 133 |
tRNA(Ile)-lysidine synthetase |
|
______________278__________________296\n______________|____________________|\n___________5'-_________GG____G_____CCUUG...UGC-3'\n______________CAUCGAUGC__CAGU_GCGCA\n______________||:|:||:|__||||_:|:||\n______________GUGGUUAUG__GUCA_UGUGU\n3'-UUU...AAAAU_________A_____G_____ACUAC...UAG-5'\n_____________|_____________________|\n_____________134___________________115\n |
3 -- 9 |
178 -- 184 |
-23.3684 kcal/mol |
8.15392 kcal/mol |
5.05466 kcal/mol |
278 296@LB@ | |@LB@ 5'- GG G CCUUG...UGC-3'@LB@ CAUCGAUGC CAGU GCGCA@LB@ ||:|:||:| |||| :|:||@LB@ GUGGUUAUG GUCA UGUGU@LB@3'-UUU...AAAAU A G ACUAC...UAG-5'@LB@ | |@LB@ 134 115@LB@@LB@@LB@Energy -11.97 kcal/mol@LB@Hybridization Energy -23.3684 kcal/mol@LB@Unfolding Energy - mRNA 8.15392 kcal/mol@LB@Unfolding Energy - sRNA 5.05466 kcal/mol@LB@@LB@Position - mRNA 278 -- 295@LB@Position - sRNA 116 -- 133@LB@Position Seed - mRNA 3 -- 9@LB@Position Seed - sRNA 178 -- 184@LB@ |
183 |
0.02111 |
0.3833 |
b0461 |
tomB |
-12.41 |
0.091700 |
125 -- 158 |
128 -- 160 |
Hha toxicity attenuator; conjugation-related protein |
|
_____________124_________________________________________159\n_____________|___________________________________________|\n5'-UGC...GGAUG________CCCAAA_G_______AUC____C__C____G____UCUGU...AUC-3'\n______________AAUACUCA______A_ACAUGAU____GCA_AG_UUAA_UUUC\n______________||||||||______|_|||||||____|||_||_|:||_||||\n______________UUAUGAGU______U_UGUACUA____CGU_UC_AGUU_AAAG\n3'-UUU...UGUGG________CAG____G_______CGUC___________G____UCUUA...UAG-5'\n_____________|___________________________________________|\n_____________161_________________________________________127\n |
224 -- 230 |
163 -- 169 |
-23.2008 kcal/mol |
3.84731 kcal/mol |
8.26055 kcal/mol |
124 159@LB@ | |@LB@5'-UGC...GGAUG CCCAAA G AUC C C G UCUGU...AUC-3'@LB@ AAUACUCA A ACAUGAU GCA AG UUAA UUUC@LB@ |||||||| | ||||||| ||| || |:|| ||||@LB@ UUAUGAGU U UGUACUA CGU UC AGUU AAAG@LB@3'-UUU...UGUGG CAG G CGUC G UCUUA...UAG-5'@LB@ | |@LB@ 161 127@LB@@LB@@LB@Energy -12.41 kcal/mol@LB@Hybridization Energy -23.2008 kcal/mol@LB@Unfolding Energy - mRNA 3.84731 kcal/mol@LB@Unfolding Energy - sRNA 8.26055 kcal/mol@LB@@LB@Position - mRNA 125 -- 158@LB@Position - sRNA 128 -- 160@LB@Position Seed - mRNA 224 -- 230@LB@Position Seed - sRNA 163 -- 169@LB@ |
110 |
0.01217 |
0.3575 |
b1324 |
tpx |
-10.54 |
0.217228 |
251 -- 258 |
126 -- 133 |
lipid hydroperoxide peroxidase |
|
_____________250____________259\n_____________|______________|\n5'-GCG...ACUCC______________GUCUG...AAG-3'\n______________UUGUUGUCGCGGUG\n______________|:|:|||||||||:\n______________AGCGACAGCGCCAU\n3'-UUU...GUUGA______________UUUAU...UAG-5'\n_____________|______________|\n_____________134____________125\n |
99 -- 105 |
48 -- 54 |
-22.761 kcal/mol |
7.03952 kcal/mol |
5.88061 kcal/mol |
250 259@LB@ | |@LB@5'-GCG...ACUCC GUCUG...AAG-3'@LB@ UUGUUGUCGCGGUG@LB@ |:|:|||||||||:@LB@ AGCGACAGCGCCAU@LB@3'-UUU...GUUGA UUUAU...UAG-5'@LB@ | |@LB@ 134 125@LB@@LB@@LB@Energy -10.54 kcal/mol@LB@Hybridization Energy -22.761 kcal/mol@LB@Unfolding Energy - mRNA 7.03952 kcal/mol@LB@Unfolding Energy - sRNA 5.88061 kcal/mol@LB@@LB@Position - mRNA 251 -- 258@LB@Position - sRNA 126 -- 133@LB@Position Seed - mRNA 99 -- 105@LB@Position Seed - sRNA 48 -- 54@LB@ |
19 |
0.001698 |
0.2633 |
b2575 |
trmN |
-12.50 |
0.088044 |
81 -- 92 |
14 -- 25 |
tRNA1(Val) (adenine(37)-N6)-methyltransferase |
|
_____________80___________93\n_____________|____________|\n5'-ACC...UACAU__G_________GUAAU...GUA-3'\n______________CC_UGCUUCGUC\n______________||_||||||:||\n______________GG_ACGAAGUAG\n3'-UUU...GUGGG__A_________-5'\n_____________|___________|\n_____________26__________14\n |
222 -- 228 |
1 -- 7 |
-15.2724 kcal/mol |
3.783 kcal/mol |
1.04836 kcal/mol |
80 93@LB@ | |@LB@5'-ACC...UACAU G GUAAU...GUA-3'@LB@ CC UGCUUCGUC@LB@ || ||||||:||@LB@ GG ACGAAGUAG@LB@3'-UUU...GUGGG A -5'@LB@ | |@LB@ 26 14@LB@@LB@@LB@Energy -12.50 kcal/mol@LB@Hybridization Energy -15.2724 kcal/mol@LB@Unfolding Energy - mRNA 3.783 kcal/mol@LB@Unfolding Energy - sRNA 1.04836 kcal/mol@LB@@LB@Position - mRNA 81 -- 92@LB@Position - sRNA 14 -- 25@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 1 -- 7@LB@ |
74 |
0.007724 |
0.3458 |
b1261 |
trpB |
-16.40 |
0.014006 |
36 -- 47 |
195 -- 206 |
tryptophan synthase beta subunit |
|
_____________35___________48\n_____________|____________|\n5'-UGG...AACGU____________GGGCU...UCA-3'\n______________UCUGCUGGCGGG\n______________||||||||||||\n______________AGACGACCGCCC\n3'-UUU...AUAUU____________ACUAA...UAG-5'\n_____________|____________|\n_____________207__________194\n |
41 -- 47 |
195 -- 201 |
-26.9412 kcal/mol |
6.0368 kcal/mol |
9.05854 kcal/mol |
35 48@LB@ | |@LB@5'-UGG...AACGU GGGCU...UCA-3'@LB@ UCUGCUGGCGGG@LB@ ||||||||||||@LB@ AGACGACCGCCC@LB@3'-UUU...AUAUU ACUAA...UAG-5'@LB@ | |@LB@ 207 194@LB@@LB@@LB@Energy -16.40 kcal/mol@LB@Hybridization Energy -26.9412 kcal/mol@LB@Unfolding Energy - mRNA 6.0368 kcal/mol@LB@Unfolding Energy - sRNA 9.05854 kcal/mol@LB@@LB@Position - mRNA 36 -- 47@LB@Position - sRNA 195 -- 206@LB@Position Seed - mRNA 41 -- 47@LB@Position Seed - sRNA 195 -- 201@LB@ |
114 |
0.01268 |
0.3575 |
b0888 |
trxB |
-13.24 |
0.061992 |
5 -- 14 |
83 -- 92 |
thioredoxin reductase FAD/NAD(P)-binding |
|
_____________4__________15\n_____________|__________|\n_______5'-AACA__________UUCAU...UGC-3'\n______________GGGGCGUUUA\n______________|||:||:|||\n______________CCCUGCGAAU\n3'-UUU...CAACA__________UGGUU...UAG-5'\n_____________|__________|\n_____________93_________82\n |
7 -- 13 |
84 -- 90 |
-15.9307 kcal/mol |
0.512019 kcal/mol |
6.69187 kcal/mol |
4 15@LB@ | |@LB@ 5'-AACA UUCAU...UGC-3'@LB@ GGGGCGUUUA@LB@ |||:||:|||@LB@ CCCUGCGAAU@LB@3'-UUU...CAACA UGGUU...UAG-5'@LB@ | |@LB@ 93 82@LB@@LB@@LB@Energy -13.24 kcal/mol@LB@Hybridization Energy -15.9307 kcal/mol@LB@Unfolding Energy - mRNA 0.512019 kcal/mol@LB@Unfolding Energy - sRNA 6.69187 kcal/mol@LB@@LB@Position - mRNA 5 -- 14@LB@Position - sRNA 83 -- 92@LB@Position Seed - mRNA 7 -- 13@LB@Position Seed - sRNA 84 -- 90@LB@ |
83 |
0.008941 |
0.3575 |
b3343 |
tusB |
-13.46 |
0.055944 |
1 -- 14 |
190 -- 203 |
mnm(5)-s(2)U34-tRNA synthesis 2-thiolation protein |
|
______________1_____________15\n______________|_____________|\n___________5'-_______C______ACAUU...GCG-3'\n______________GCUGGCG_GUGAUU\n______________|||||||_||||||\n______________CGACCGC_CACUAA\n3'-UUU...UUAGA_______C______AAUGU...UAG-5'\n_____________|______________|\n_____________204____________189\n |
1 -- 7 |
197 -- 203 |
-22.3351 kcal/mol |
4.22102 kcal/mol |
9.06745 kcal/mol |
1 15@LB@ | |@LB@ 5'- C ACAUU...GCG-3'@LB@ GCUGGCG GUGAUU@LB@ ||||||| ||||||@LB@ CGACCGC CACUAA@LB@3'-UUU...UUAGA C AAUGU...UAG-5'@LB@ | |@LB@ 204 189@LB@@LB@@LB@Energy -13.46 kcal/mol@LB@Hybridization Energy -22.3351 kcal/mol@LB@Unfolding Energy - mRNA 4.22102 kcal/mol@LB@Unfolding Energy - sRNA 9.06745 kcal/mol@LB@@LB@Position - mRNA 1 -- 14@LB@Position - sRNA 190 -- 203@LB@Position Seed - mRNA 1 -- 7@LB@Position Seed - sRNA 197 -- 203@LB@ |
113 |
0.01268 |
0.3575 |
b2066 |
udk |
-9.33 |
0.364673 |
240 -- 253 |
17 -- 31 |
uridine/cytidine kinase |
|
_____________239________________254\n_____________|__________________|\n5'-CGC...UUCGU_________C__AA____CAGGU...GUG-3'\n______________CGCCCCCUU_CU__CAUC\n______________|:|||||||_||__||||\n______________GUGGGGGAA_GA__GUAG\n3'-UUU...ACCCC_________C__A_____-5'\n_____________|_________________|\n_____________32________________17\n |
161 -- 167 |
9 -- 15 |
-20.5437 kcal/mol |
3.26859 kcal/mol |
7.16879 kcal/mol |
239 254@LB@ | |@LB@5'-CGC...UUCGU C AA CAGGU...GUG-3'@LB@ CGCCCCCUU CU CAUC@LB@ |:||||||| || ||||@LB@ GUGGGGGAA GA GUAG@LB@3'-UUU...ACCCC C A -5'@LB@ | |@LB@ 32 17@LB@@LB@@LB@Energy -9.33 kcal/mol@LB@Hybridization Energy -20.5437 kcal/mol@LB@Unfolding Energy - mRNA 3.26859 kcal/mol@LB@Unfolding Energy - sRNA 7.16879 kcal/mol@LB@@LB@Position - mRNA 240 -- 253@LB@Position - sRNA 17 -- 31@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 9 -- 15@LB@ |
20 |
0.001715 |
0.2633 |
b3453 |
ugpB |
-12.22 |
0.100645 |
241 -- 257 |
18 -- 32 |
sn-glycerol-3-phosphate ABC transporter periplasmic binding protein |
|
_____________240______________258\n_____________|________________|\n5'-UUC...AAUUC_____U__________AAGAG...UGG-3'\n______________GCGCA_UCGGUACAAC\n______________:||||_:|:|:|||||\n______________UGCGU_GGUCGUGUUG\n3'-UUU...UUGGU_____U__________AAGCG...UAG-5'\n_____________|________________|\n_____________33_______________17\n |
180 -- 186 |
63 -- 69 |
-22.0099 kcal/mol |
5.49331 kcal/mol |
9.84719 kcal/mol |
240 258@LB@ | |@LB@5'-UUC...AAUUC U AAGAG...UGG-3'@LB@ GCGCA UCGGUACAAC@LB@ :|||| :|:|:|||||@LB@ UGCGU GGUCGUGUUG@LB@3'-UUU...UUGGU U AAGCG...UAG-5'@LB@ | |@LB@ 33 17@LB@@LB@@LB@Energy -12.22 kcal/mol@LB@Hybridization Energy -22.0099 kcal/mol@LB@Unfolding Energy - mRNA 5.49331 kcal/mol@LB@Unfolding Energy - sRNA 9.84719 kcal/mol@LB@@LB@Position - mRNA 241 -- 257@LB@Position - sRNA 18 -- 32@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 63 -- 69@LB@ |