61 |
0.006025 |
0.3261 |
b4330 |
yjiH |
-10.68 |
0.204041 |
214 -- 227 |
80 -- 92 |
nucleoside recognition pore and gate family putative inner membrane transporter |
|
_____________213______228\n_____________|________|\n5'-ACU...ACAAG________GUAGC...CCG-3'\n______________GGGAUGCU\n______________||||:|||\n______________CCCUGCGA\n3'-UUU...CAACA________AUUGG...UAG-5'\n_____________|________|\n_____________93_______79\n |
215 -- 221 |
85 -- 91 |
-14.2816 kcal/mol |
2.08889 kcal/mol |
5.76908 kcal/mol |
213 228@LB@ | |@LB@5'-ACU...ACAAG GUAGC...CCG-3'@LB@ GGGAUGCU@LB@ ||||:|||@LB@ CCCUGCGA@LB@3'-UUU...CAACA AUUGG...UAG-5'@LB@ | |@LB@ 93 79@LB@@LB@@LB@Energy -10.68 kcal/mol@LB@Hybridization Energy -14.2816 kcal/mol@LB@Unfolding Energy - mRNA 2.08889 kcal/mol@LB@Unfolding Energy - sRNA 5.76908 kcal/mol@LB@@LB@Position - mRNA 214 -- 227@LB@Position - sRNA 80 -- 92@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 85 -- 91@LB@ |
156 |
0.01739 |
0.3749 |
b4332 |
yjiJ |
-7.83 |
0.625728 |
95 -- 115 |
80 -- 101 |
DUF1228 family putative inner membrane MFS superfamily transporter |
|
_____________94_______116\n_____________|________|\n5'-AAC...GGUUU________ACAUC...UUU-3'\n______________GUCGCAUA\n______________|||:||:|\n______________CAGUGUGU\n3'-UUU...UGAGU________ACUAC...UAG-5'\n_____________|________|\n_____________102______79\n |
23 -- 29 |
167 -- 173 |
-9.78459 kcal/mol |
1.62979 kcal/mol |
0.409692 kcal/mol |
94 116@LB@ | |@LB@5'-AAC...GGUUU ACAUC...UUU-3'@LB@ GUCGCAUA@LB@ |||:||:|@LB@ CAGUGUGU@LB@3'-UUU...UGAGU ACUAC...UAG-5'@LB@ | |@LB@ 102 79@LB@@LB@@LB@Energy -7.83 kcal/mol@LB@Hybridization Energy -9.78459 kcal/mol@LB@Unfolding Energy - mRNA 1.62979 kcal/mol@LB@Unfolding Energy - sRNA 0.409692 kcal/mol@LB@@LB@Position - mRNA 95 -- 115@LB@Position - sRNA 80 -- 101@LB@Position Seed - mRNA 23 -- 29@LB@Position Seed - sRNA 167 -- 173@LB@ |
192 |
0.02246 |
0.3833 |
b4340 |
yjiR |
-11.68 |
0.128907 |
36 -- 62 |
126 -- 153 |
putative DNA-binding transcriptional regulator/putative aminotransferase |
|
_____________35_______63\n_____________|________|\n5'-AGC...CAGAG________AUCCA...GUC-3'\n______________GCUUCAUC\n______________||||||||\n______________CGAAGUAG\n3'-UUU...GGGAA________-5'\n_____________|_______|\n_____________154_____126\n |
50 -- 56 |
1 -- 7 |
-12.7164 kcal/mol |
1.73081 kcal/mol |
0.703102 kcal/mol |
35 63@LB@ | |@LB@5'-AGC...CAGAG AUCCA...GUC-3'@LB@ GCUUCAUC@LB@ ||||||||@LB@ CGAAGUAG@LB@3'-UUU...GGGAA -5'@LB@ | |@LB@ 154 126@LB@@LB@@LB@Energy -11.68 kcal/mol@LB@Hybridization Energy -12.7164 kcal/mol@LB@Unfolding Energy - mRNA 1.73081 kcal/mol@LB@Unfolding Energy - sRNA 0.703102 kcal/mol@LB@@LB@Position - mRNA 36 -- 62@LB@Position - sRNA 126 -- 153@LB@Position Seed - mRNA 50 -- 56@LB@Position Seed - sRNA 1 -- 7@LB@ |
168 |
0.01937 |
0.3812 |
b4354 |
yjiY |
-11.43 |
0.145336 |
99 -- 125 |
132 -- 159 |
putative transporter |
|
_____________98__________________________________________________126\n_____________|___________________________________________________|\n5'-CUU...UACCU_____UACG_______AACUCU_____CA______A_______A_______AUUUA...ACA-3'\n______________UACUU____CGCGCGU______GGCAA__UC_ACU__CAGGAU_GCGGUCA\n______________||||:____|:|:|:|______|||||__||_|||__|||:||_|||||||\n______________AUGAG____GUGUGUA______CCGUU__AG_UGA__GUCUUA_CGCCAGU\n3'-UUU...UGGUU_____UCA________CUACGU_____C___U___AA______A_______AGGGU...UAG-5'\n_____________|___________________________________________________|\n_____________160_________________________________________________131\n |
119 -- 125 |
132 -- 138 |
-39.8751 kcal/mol |
13.2469 kcal/mol |
12.8104 kcal/mol |
98 126@LB@ | |@LB@5'-CUU...UACCU UACG AACUCU CA A A AUUUA...ACA-3'@LB@ UACUU CGCGCGU GGCAA UC ACU CAGGAU GCGGUCA@LB@ ||||: |:|:|:| ||||| || ||| |||:|| |||||||@LB@ AUGAG GUGUGUA CCGUU AG UGA GUCUUA CGCCAGU@LB@3'-UUU...UGGUU UCA CUACGU C U AA A AGGGU...UAG-5'@LB@ | |@LB@ 160 131@LB@@LB@@LB@Energy -11.43 kcal/mol@LB@Hybridization Energy -39.8751 kcal/mol@LB@Unfolding Energy - mRNA 13.2469 kcal/mol@LB@Unfolding Energy - sRNA 12.8104 kcal/mol@LB@@LB@Position - mRNA 99 -- 125@LB@Position - sRNA 132 -- 159@LB@Position Seed - mRNA 119 -- 125@LB@Position Seed - sRNA 132 -- 138@LB@ |
146 |
0.01559 |
0.358 |
b4394 |
yjjX |
-8.60 |
0.483218 |
101 -- 114 |
123 -- 137 |
non-canonical purine NTP phosphatase ITPase/XTPase |
|
_____________100__________________________________115\n_____________|____________________________________|\n5'-UGC...AAUCC______A______________UC________UU___CGAGA...CAU-3'\n______________CGCUAA_AUUCAG__GC_CAU__UGCAGGCA__UCA\n______________|:|:||_|:||||__:|_|||__||||||||__|||\n______________GUGGUU_UGAGUC__UG_GUA__ACGUCCGU__AGU\n3'-UUU...AAAAU______A______AG__U___CU________UC___UGAAA...UAG-5'\n_____________|____________________________________|\n_____________138__________________________________122\n |
254 -- 260 |
156 -- 162 |
-32.2061 kcal/mol |
8.98762 kcal/mol |
12.5635 kcal/mol |
100 115@LB@ | |@LB@5'-UGC...AAUCC A UC UU CGAGA...CAU-3'@LB@ CGCUAA AUUCAG GC CAU UGCAGGCA UCA@LB@ |:|:|| |:|||| :| ||| |||||||| |||@LB@ GUGGUU UGAGUC UG GUA ACGUCCGU AGU@LB@3'-UUU...AAAAU A AG U CU UC UGAAA...UAG-5'@LB@ | |@LB@ 138 122@LB@@LB@@LB@Energy -8.60 kcal/mol@LB@Hybridization Energy -32.2061 kcal/mol@LB@Unfolding Energy - mRNA 8.98762 kcal/mol@LB@Unfolding Energy - sRNA 12.5635 kcal/mol@LB@@LB@Position - mRNA 101 -- 114@LB@Position - sRNA 123 -- 137@LB@Position Seed - mRNA 254 -- 260@LB@Position Seed - sRNA 156 -- 162@LB@ |
126 |
0.01383 |
0.3575 |
b1843 |
yobB |
-8.48 |
0.503741 |
101 -- 118 |
168 -- 185 |
C-N hydrolase family protein |
|
_____________100____________119\n_____________|______________|\n5'-CCU...AACUU____AG________UUUCU...CCA-3'\n______________AUAC__AGUUACAC\n______________||||__|||:||||\n______________UAUG__UCAGUGUG\n3'-UUU...GUGGU____AG________UACUA...UAG-5'\n_____________|______________|\n_____________186____________167\n |
112 -- 118 |
168 -- 174 |
-13.9608 kcal/mol |
3.09724 kcal/mol |
0.286881 kcal/mol |
100 119@LB@ | |@LB@5'-CCU...AACUU AG UUUCU...CCA-3'@LB@ AUAC AGUUACAC@LB@ |||| |||:||||@LB@ UAUG UCAGUGUG@LB@3'-UUU...GUGGU AG UACUA...UAG-5'@LB@ | |@LB@ 186 167@LB@@LB@@LB@Energy -8.48 kcal/mol@LB@Hybridization Energy -13.9608 kcal/mol@LB@Unfolding Energy - mRNA 3.09724 kcal/mol@LB@Unfolding Energy - sRNA 0.286881 kcal/mol@LB@@LB@Position - mRNA 101 -- 118@LB@Position - sRNA 168 -- 185@LB@Position Seed - mRNA 112 -- 118@LB@Position Seed - sRNA 168 -- 174@LB@ |
96 |
0.01055 |
0.3575 |
b1953 |
yodD |
-11.39 |
0.147949 |
264 -- 273 |
196 -- 205 |
uncharacterized protein |
|
_____________263_____274\n_____________|_______|\n5'-CCA...UUCAC_______GUUUU...AAG-3'\n______________CUUCAUC\n______________|||||||\n______________GAAGUAG\n3'-UUU...GGAAC_______-5'\n_____________|______|\n_____________206____196\n |
33 -- 39 |
1 -- 7 |
-8.82286 kcal/mol |
0.690587 kcal/mol |
0.701705 kcal/mol |
263 274@LB@ | |@LB@5'-CCA...UUCAC GUUUU...AAG-3'@LB@ CUUCAUC@LB@ |||||||@LB@ GAAGUAG@LB@3'-UUU...GGAAC -5'@LB@ | |@LB@ 206 196@LB@@LB@@LB@Energy -11.39 kcal/mol@LB@Hybridization Energy -8.82286 kcal/mol@LB@Unfolding Energy - mRNA 0.690587 kcal/mol@LB@Unfolding Energy - sRNA 0.701705 kcal/mol@LB@@LB@Position - mRNA 264 -- 273@LB@Position - sRNA 196 -- 205@LB@Position Seed - mRNA 33 -- 39@LB@Position Seed - sRNA 1 -- 7@LB@ |
46 |
0.004081 |
0.2985 |
b2466 |
ypfG |
-10.37 |
0.233995 |
256 -- 280 |
68 -- 95 |
DUF1176 family protein |
|
_____________255_____281\n_____________|_______|\n5'-AAA...CAAAC_______UUAAU...UCA-3'\n______________GUCACAU\n______________||||||:\n______________CAGUGUG\n3'-UUU...UGAGU_______UACUA...UAG-5'\n_____________|_______|\n_____________96______67\n |
57 -- 63 |
168 -- 174 |
-9.42181 kcal/mol |
2.13246 kcal/mol |
0.260649 kcal/mol |
255 281@LB@ | |@LB@5'-AAA...CAAAC UUAAU...UCA-3'@LB@ GUCACAU@LB@ ||||||:@LB@ CAGUGUG@LB@3'-UUU...UGAGU UACUA...UAG-5'@LB@ | |@LB@ 96 67@LB@@LB@@LB@Energy -10.37 kcal/mol@LB@Hybridization Energy -9.42181 kcal/mol@LB@Unfolding Energy - mRNA 2.13246 kcal/mol@LB@Unfolding Energy - sRNA 0.260649 kcal/mol@LB@@LB@Position - mRNA 256 -- 280@LB@Position - sRNA 68 -- 95@LB@Position Seed - mRNA 57 -- 63@LB@Position Seed - sRNA 168 -- 174@LB@ |
36 |
0.002935 |
0.2744 |
b3152 |
yraR |
-13.11 |
0.066158 |
241 -- 255 |
123 -- 138 |
putative nucleoside-diphosphate-sugar epimerase |
|
_____________240______________256\n_____________|________________|\n5'-ACU...GGUGG________________GGAUG...CGA-3'\n______________GCGGUCA_CCUGCUGC\n______________|||||||_||::||||\n______________CGCCAGU_GGGUGACG\n3'-UUU...CUUAA_______A________UAGUC...UAG-5'\n_____________|________________|\n_____________139______________122\n |
241 -- 247 |
132 -- 138 |
-26.7154 kcal/mol |
6.55898 kcal/mol |
13.7588 kcal/mol |
240 256@LB@ | |@LB@5'-ACU...GGUGG GGAUG...CGA-3'@LB@ GCGGUCA CCUGCUGC@LB@ ||||||| ||::||||@LB@ CGCCAGU GGGUGACG@LB@3'-UUU...CUUAA A UAGUC...UAG-5'@LB@ | |@LB@ 139 122@LB@@LB@@LB@Energy -13.11 kcal/mol@LB@Hybridization Energy -26.7154 kcal/mol@LB@Unfolding Energy - mRNA 6.55898 kcal/mol@LB@Unfolding Energy - sRNA 13.7588 kcal/mol@LB@@LB@Position - mRNA 241 -- 255@LB@Position - sRNA 123 -- 138@LB@Position Seed - mRNA 241 -- 247@LB@Position Seed - sRNA 132 -- 138@LB@ |
43 |
0.003721 |
0.2912 |
b3232 |
zapE |
-10.85 |
0.189153 |
236 -- 256 |
70 -- 90 |
divisome ATPase |
|
_____________235___________257\n_____________|_____________|\n5'-AGG...AACGG____UU_______AACCG...AAA-3'\n______________CCUU__UUUCGUC\n______________||||__:|||:||\n______________GGAA__GAAGUAG\n3'-UUU...GUGGG____C________-5'\n_____________|____________|\n_____________91___________70\n |
146 -- 152 |
1 -- 7 |
-9.27362 kcal/mol |
0.691484 kcal/mol |
1.04836 kcal/mol |
235 257@LB@ | |@LB@5'-AGG...AACGG UU AACCG...AAA-3'@LB@ CCUU UUUCGUC@LB@ |||| :|||:||@LB@ GGAA GAAGUAG@LB@3'-UUU...GUGGG C -5'@LB@ | |@LB@ 91 70@LB@@LB@@LB@Energy -10.85 kcal/mol@LB@Hybridization Energy -9.27362 kcal/mol@LB@Unfolding Energy - mRNA 0.691484 kcal/mol@LB@Unfolding Energy - sRNA 1.04836 kcal/mol@LB@@LB@Position - mRNA 236 -- 256@LB@Position - sRNA 70 -- 90@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 1 -- 7@LB@ |