| 93 |
0.01041 |
0.3575 |
b3556 |
cspA |
-12.65 |
0.082193 |
78 -- 98 |
139 -- 160 |
RNA chaperone and antiterminator cold-inducible |
|
_____________77_____________________99\n_____________|______________________|\n5'-AUU...UAGUA_________C____CA______AUCGU...ACU-3'\n______________AGGCAAGUC__CUU__AGAGUU\n______________|||||||||__|||__|||:||\n______________UCCGUUCAG__GAA__UCUUAA\n3'-UUU...CUACG_________UU___AG______CGCCA...UAG-5'\n_____________|______________________|\n_____________161____________________138\n |
80 -- 86 |
152 -- 158 |
-20.4019 kcal/mol |
4.68257 kcal/mol |
5.76704 kcal/mol |
77 99@LB@ | |@LB@5'-AUU...UAGUA C CA AUCGU...ACU-3'@LB@ AGGCAAGUC CUU AGAGUU@LB@ ||||||||| ||| |||:||@LB@ UCCGUUCAG GAA UCUUAA@LB@3'-UUU...CUACG UU AG CGCCA...UAG-5'@LB@ | |@LB@ 161 138@LB@@LB@@LB@Energy -12.65 kcal/mol@LB@Hybridization Energy -20.4019 kcal/mol@LB@Unfolding Energy - mRNA 4.68257 kcal/mol@LB@Unfolding Energy - sRNA 5.76704 kcal/mol@LB@@LB@Position - mRNA 78 -- 98@LB@Position - sRNA 139 -- 160@LB@Position Seed - mRNA 80 -- 86@LB@Position Seed - sRNA 152 -- 158@LB@ |
| 100 |
0.01091 |
0.3575 |
b0123 |
cueO |
-12.06 |
0.108476 |
211 -- 256 |
146 -- 195 |
multicopper oxidase (laccase) |
|
_____________210________________________________________________257\n_____________|__________________________________________________|\n5'-CUG...ACGUC_______CUUAA________C_______UG_________U__________GCCGC...CGU-3'\n______________GUGAUUU______AAUAUUC_GUCGCGC__GGUGU_GGC___UCGGCUUU\n______________|||||||______||||:||_|||:|:|__|:||:_|||___||::||||\n______________CACUAAA______UUAUGAG_CAGUGUG__CUACG_CCG___AGUUGAAA\n3'-UUU...CCGCC_______AUGUGG_______U_______UA_____U___UUC________GUCUU...UAG-5'\n_____________|__________________________________________________|\n_____________196________________________________________________145\n |
250 -- 256 |
146 -- 152 |
-42.9672 kcal/mol |
13.2361 kcal/mol |
12.9468 kcal/mol |
210 257@LB@ | |@LB@5'-CUG...ACGUC CUUAA C UG U GCCGC...CGU-3'@LB@ GUGAUUU AAUAUUC GUCGCGC GGUGU GGC UCGGCUUU@LB@ ||||||| ||||:|| |||:|:| |:||: ||| ||::||||@LB@ CACUAAA UUAUGAG CAGUGUG CUACG CCG AGUUGAAA@LB@3'-UUU...CCGCC AUGUGG U UA U UUC GUCUU...UAG-5'@LB@ | |@LB@ 196 145@LB@@LB@@LB@Energy -12.06 kcal/mol@LB@Hybridization Energy -42.9672 kcal/mol@LB@Unfolding Energy - mRNA 13.2361 kcal/mol@LB@Unfolding Energy - sRNA 12.9468 kcal/mol@LB@@LB@Position - mRNA 211 -- 256@LB@Position - sRNA 146 -- 195@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 146 -- 152@LB@ |
| 145 |
0.01541 |
0.3575 |
b1191 |
cvrA |
-14.91 |
0.028165 |
61 -- 91 |
128 -- 160 |
putative cation/proton antiporter |
|
_____________60___________________________________92\n_____________|____________________________________|\n5'-UGA...CGGGA_____CUC_______GA___________________GUUCU...CUA-3'\n______________AGGCA___AGUUGAC__UUA_____GCGGUCAUCCU\n______________|||||___|||::||__|:|_____||||||||||:\n______________UCCGU___UCAGUUG__AGU_____CGCCAGUAGGG\n3'-UUU...CUACG_______________AA___CUUAA___________UGACG...UAG-5'\n_____________|____________________________________|\n_____________161__________________________________127\n |
85 -- 91 |
128 -- 134 |
-32.547 kcal/mol |
9.03914 kcal/mol |
12.2557 kcal/mol |
60 92@LB@ | |@LB@5'-UGA...CGGGA CUC GA GUUCU...CUA-3'@LB@ AGGCA AGUUGAC UUA GCGGUCAUCCU@LB@ ||||| |||::|| |:| ||||||||||:@LB@ UCCGU UCAGUUG AGU CGCCAGUAGGG@LB@3'-UUU...CUACG AA CUUAA UGACG...UAG-5'@LB@ | |@LB@ 161 127@LB@@LB@@LB@Energy -14.91 kcal/mol@LB@Hybridization Energy -32.547 kcal/mol@LB@Unfolding Energy - mRNA 9.03914 kcal/mol@LB@Unfolding Energy - sRNA 12.2557 kcal/mol@LB@@LB@Position - mRNA 61 -- 91@LB@Position - sRNA 128 -- 160@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 128 -- 134@LB@ |
| 197 |
0.02355 |
0.3833 |
b2764 |
cysJ |
-10.17 |
0.255883 |
3 -- 30 |
98 -- 123 |
sulfite reductase alpha subunit flavoprotein |
|
_____________2________31\n_____________|________|\n5'-UUC...AACAG________ACUGG...UUG-3'\n______________CUUUGCUU\n______________|:||||||\n______________GGAACGAA\n3'-UUU...GUGGG________GUAG-5'\n_____________|________|\n_____________124______97\n |
176 -- 182 |
5 -- 11 |
-8.59037 kcal/mol |
0.881795 kcal/mol |
1.04254 kcal/mol |
2 31@LB@ | |@LB@5'-UUC...AACAG ACUGG...UUG-3'@LB@ CUUUGCUU@LB@ |:||||||@LB@ GGAACGAA@LB@3'-UUU...GUGGG GUAG-5'@LB@ | |@LB@ 124 97@LB@@LB@@LB@Energy -10.17 kcal/mol@LB@Hybridization Energy -8.59037 kcal/mol@LB@Unfolding Energy - mRNA 0.881795 kcal/mol@LB@Unfolding Energy - sRNA 1.04254 kcal/mol@LB@@LB@Position - mRNA 3 -- 30@LB@Position - sRNA 98 -- 123@LB@Position Seed - mRNA 176 -- 182@LB@Position Seed - sRNA 5 -- 11@LB@ |
| 155 |
0.01733 |
0.3749 |
b3542 |
dppC |
-14.36 |
0.036537 |
40 -- 62 |
74 -- 93 |
dipeptide/heme ABC transporter permease |
|
_____________39_______________________________________________________63\n_____________|________________________________________________________|\n5'-GGG...UCGUC____U__U___C__________UA___C_____GA_______C_____________AGAAG...UCG-3'\n______________AACU_GC_GGU__GAUCUGCUG__CGG_GUGGU___AC_CCG_GUAUUC_GUCAUA\n______________|||:_||_|||__:||||||||__|||_|||:|___||_||:_:||:||_||||:|\n______________UUGG_CG_CCA__UUAGACGAC__GCC_CACUA___UG_GGU_UAUGAG_CAGUGU\n_____3'-UUUUUU____U__U___UA_________C__________AAA__U__________U______GUACU...UAG-5'\n_____________|________________________________________________________|\n_____________94_______________________________________________________73\n |
146 -- 152 |
200 -- 206 |
-46.3163 kcal/mol |
15.5571 kcal/mol |
18.3074 kcal/mol |
39 63@LB@ | |@LB@5'-GGG...UCGUC U U C UA C GA C AGAAG...UCG-3'@LB@ AACU GC GGU GAUCUGCUG CGG GUGGU AC CCG GUAUUC GUCAUA@LB@ |||: || ||| :|||||||| ||| |||:| || ||: :||:|| ||||:|@LB@ UUGG CG CCA UUAGACGAC GCC CACUA UG GGU UAUGAG CAGUGU@LB@ 3'-UUUUUU U U UA C AAA U U GUACU...UAG-5'@LB@ | |@LB@ 94 73@LB@@LB@@LB@Energy -14.36 kcal/mol@LB@Hybridization Energy -46.3163 kcal/mol@LB@Unfolding Energy - mRNA 15.5571 kcal/mol@LB@Unfolding Energy - sRNA 18.3074 kcal/mol@LB@@LB@Position - mRNA 40 -- 62@LB@Position - sRNA 74 -- 93@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 200 -- 206@LB@ |
| 35 |
0.002845 |
0.2736 |
b3887 |
dtd |
-14.98 |
0.027287 |
55 -- 74 |
191 -- 211 |
D-tyr-tRNA(Tyr) deacylase |
|
_____________54____________________75\n_____________|_____________________|\n5'-GGA...UCAUU______G______________CCCCA...UCG-3'\n______________UAUGGU_UGCUGGCGG_UGAU\n______________|||::|_|||||||||_||||\n______________AUAUUA_ACGACCGCC_ACUA\n3'-UUU...CGUCC______G_________C____AAAUG...UAG-5'\n_____________|_____________________|\n_____________212___________________190\n |
64 -- 70 |
196 -- 202 |
-27.702 kcal/mol |
6.2401 kcal/mol |
11.5765 kcal/mol |
54 75@LB@ | |@LB@5'-GGA...UCAUU G CCCCA...UCG-3'@LB@ UAUGGU UGCUGGCGG UGAU@LB@ |||::| ||||||||| ||||@LB@ AUAUUA ACGACCGCC ACUA@LB@3'-UUU...CGUCC G C AAAUG...UAG-5'@LB@ | |@LB@ 212 190@LB@@LB@@LB@Energy -14.98 kcal/mol@LB@Hybridization Energy -27.702 kcal/mol@LB@Unfolding Energy - mRNA 6.2401 kcal/mol@LB@Unfolding Energy - sRNA 11.5765 kcal/mol@LB@@LB@Position - mRNA 55 -- 74@LB@Position - sRNA 191 -- 211@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 196 -- 202@LB@ |
| 22 |
0.001812 |
0.2633 |
b2566 |
era |
-10.12 |
0.260747 |
283 -- 292 |
16 -- 26 |
membrane-associated 16S rRNA-binding GTPase |
|
_____________282________________293\n_____________|__________________|\n5'-UUG...AAUGA_________AA_______UGCGG...UCU-3'\n______________GCAUCGAUA___AGUUAC\n______________:||:|:|||___|||:||\n______________UGUGGUUAU___UCAGUG\n3'-UUU...UAAAA_________GAG______UGUAC...UAG-5'\n_____________|__________________|\n_____________27_________________15\n |
205 -- 211 |
181 -- 187 |
-15.5423 kcal/mol |
3.87874 kcal/mol |
4.86686 kcal/mol |
282 293@LB@ | |@LB@5'-UUG...AAUGA AA UGCGG...UCU-3'@LB@ GCAUCGAUA AGUUAC@LB@ :||:|:||| |||:||@LB@ UGUGGUUAU UCAGUG@LB@3'-UUU...UAAAA GAG UGUAC...UAG-5'@LB@ | |@LB@ 27 15@LB@@LB@@LB@Energy -10.12 kcal/mol@LB@Hybridization Energy -15.5423 kcal/mol@LB@Unfolding Energy - mRNA 3.87874 kcal/mol@LB@Unfolding Energy - sRNA 4.86686 kcal/mol@LB@@LB@Position - mRNA 283 -- 292@LB@Position - sRNA 16 -- 26@LB@Position Seed - mRNA 205 -- 211@LB@Position Seed - sRNA 181 -- 187@LB@ |
| 128 |
0.01397 |
0.3575 |
b2440 |
eutC |
-11.59 |
0.134682 |
23 -- 48 |
126 -- 153 |
ethanolamine ammonia-lyase small subunit (light chain) |
|
_____________22______________________________49\n_____________|_______________________________|\n______5'-CCGCU_______G_______________AC______GACCA...ACU-3'\n______________GGGUGAU___ACAUC_AUGCUCA__UAC_CA\n______________|||||||___|||:|_||:||||__:||_||\n______________CCCACUA___UGUGG_UAUGAGU__GUG_GU\n3'-UUU...GACCG_______AAA_____U_______CA___U__ACUAC...UAG-5'\n_____________|_______________________________|\n_____________154_____________________________125\n |
19 -- 25 |
175 -- 181 |
-25.4577 kcal/mol |
6.00586 kcal/mol |
5.22711 kcal/mol |
22 49@LB@ | |@LB@ 5'-CCGCU G AC GACCA...ACU-3'@LB@ GGGUGAU ACAUC AUGCUCA UAC CA@LB@ ||||||| |||:| ||:|||| :|| ||@LB@ CCCACUA UGUGG UAUGAGU GUG GU@LB@3'-UUU...GACCG AAA U CA U ACUAC...UAG-5'@LB@ | |@LB@ 154 125@LB@@LB@@LB@Energy -11.59 kcal/mol@LB@Hybridization Energy -25.4577 kcal/mol@LB@Unfolding Energy - mRNA 6.00586 kcal/mol@LB@Unfolding Energy - sRNA 5.22711 kcal/mol@LB@@LB@Position - mRNA 23 -- 48@LB@Position - sRNA 126 -- 153@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 175 -- 181@LB@ |
| 133 |
0.01432 |
0.3575 |
b2342 |
fadI |
-11.00 |
0.176527 |
78 -- 109 |
125 -- 153 |
beta-ketoacyl-CoA thiolase anaerobic subunit |
|
_____________77________________________________110\n_____________|_________________________________|\n5'-UCC...UCUCU__UU_____CUCUC________UAGC_______UUCCC...AUG-3'\n______________UC__CUUUU_____UGU_GUCA____UCCCACU\n______________||__||||:_____||:_||||____|||||||\n______________AG__GAAAG_____ACG_CAGU____AGGGUGA\n3'-UUU...CGUUC__UU_____UCUUA___C_______________CGUAG...UAG-5'\n_____________|_________________________________|\n_____________154_______________________________124\n |
103 -- 109 |
125 -- 131 |
-19.0317 kcal/mol |
1.6674 kcal/mol |
9.91012 kcal/mol |
77 110@LB@ | |@LB@5'-UCC...UCUCU UU CUCUC UAGC UUCCC...AUG-3'@LB@ UC CUUUU UGU GUCA UCCCACU@LB@ || ||||: ||: |||| |||||||@LB@ AG GAAAG ACG CAGU AGGGUGA@LB@3'-UUU...CGUUC UU UCUUA C CGUAG...UAG-5'@LB@ | |@LB@ 154 124@LB@@LB@@LB@Energy -11.00 kcal/mol@LB@Hybridization Energy -19.0317 kcal/mol@LB@Unfolding Energy - mRNA 1.6674 kcal/mol@LB@Unfolding Energy - sRNA 9.91012 kcal/mol@LB@@LB@Position - mRNA 78 -- 109@LB@Position - sRNA 125 -- 153@LB@Position Seed - mRNA 103 -- 109@LB@Position Seed - sRNA 125 -- 131@LB@ |
| 158 |
0.01775 |
0.3749 |
b1187 |
fadR |
-13.89 |
0.045798 |
42 -- 66 |
152 -- 176 |
fatty acid metabolism regulon transcriptional regulator |
|
_____________41________________________67\n_____________|_________________________|\n5'-AAA...CUUAA______G___G__GUG_________UUGAU...CAG-3'\n______________CGGUCA_GCA_GA___AGGCAAGUC\n______________|:||||_:||_||___|||||||||\n______________GUCAGU_UGU_CU___UCCGUUCAG\n3'-UUU...UAUGA______G___A__ACG_________UUGAA...UAG-5'\n_____________|_________________________|\n_____________177_______________________151\n |
60 -- 66 |
152 -- 158 |
-31.5031 kcal/mol |
7.04431 kcal/mol |
8.02398 kcal/mol |
41 67@LB@ | |@LB@5'-AAA...CUUAA G G GUG UUGAU...CAG-3'@LB@ CGGUCA GCA GA AGGCAAGUC@LB@ |:|||| :|| || |||||||||@LB@ GUCAGU UGU CU UCCGUUCAG@LB@3'-UUU...UAUGA G A ACG UUGAA...UAG-5'@LB@ | |@LB@ 177 151@LB@@LB@@LB@Energy -13.89 kcal/mol@LB@Hybridization Energy -31.5031 kcal/mol@LB@Unfolding Energy - mRNA 7.04431 kcal/mol@LB@Unfolding Energy - sRNA 8.02398 kcal/mol@LB@@LB@Position - mRNA 42 -- 66@LB@Position - sRNA 152 -- 176@LB@Position Seed - mRNA 60 -- 66@LB@Position Seed - sRNA 152 -- 158@LB@ |
