140 |
0.01495 |
0.3575 |
b2415 |
ptsH |
-9.89 |
0.288161 |
112 -- 122 |
24 -- 34 |
phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr) |
|
_____________111____________123\n_____________|______________|\n5'-UUG...CAAUA_____UA_______ACCGC...UUA-3'\n______________CAGGC__AAGUCGA\n______________|||||__|||||:|\n______________GUCCG__UUCAGUU\n3'-UUU...ACUAC______________GAAAG...UAG-5'\n_____________|______________|\n_____________35_____________23\n |
138 -- 144 |
150 -- 156 |
-14.4294 kcal/mol |
3.35524 kcal/mol |
6.54796 kcal/mol |
111 123@LB@ | |@LB@5'-UUG...CAAUA UA ACCGC...UUA-3'@LB@ CAGGC AAGUCGA@LB@ ||||| |||||:|@LB@ GUCCG UUCAGUU@LB@3'-UUU...ACUAC GAAAG...UAG-5'@LB@ | |@LB@ 35 23@LB@@LB@@LB@Energy -9.89 kcal/mol@LB@Hybridization Energy -14.4294 kcal/mol@LB@Unfolding Energy - mRNA 3.35524 kcal/mol@LB@Unfolding Energy - sRNA 6.54796 kcal/mol@LB@@LB@Position - mRNA 112 -- 122@LB@Position - sRNA 24 -- 34@LB@Position Seed - mRNA 138 -- 144@LB@Position Seed - sRNA 150 -- 156@LB@ |
34 |
0.002769 |
0.2736 |
b2416 |
ptsI |
-14.05 |
0.042463 |
178 -- 225 |
128 -- 177 |
PEP-protein phosphotransferase of PTS system (enzyme I) |
|
_____________177_________________________________________226\n_____________|___________________________________________|\n5'-GUG...AAAAA_________AGUAAGGUAGGGU______UU______UU_____AUCCC...CCG-3'\n______________UCAGUCACA_____________UAUGAU__CAGGCA__UUAGC\n______________|||||||||_____________:|||||__||||||__|:|:|\n______________AGUCAGUGU_____________GUACUA__GUCCGU__AGUUG\n3'-UUU...UUAUG____________________________C_______UC_____AAAGU...UAG-5'\n_____________|___________________________________________|\n_____________178_________________________________________127\n |
180 -- 186 |
169 -- 175 |
-30.6202 kcal/mol |
5.78851 kcal/mol |
8.17404 kcal/mol |
177 226@LB@ | |@LB@5'-GUG...AAAAA AGUAAGGUAGGGU UU UU AUCCC...CCG-3'@LB@ UCAGUCACA UAUGAU CAGGCA UUAGC@LB@ ||||||||| :||||| |||||| |:|:|@LB@ AGUCAGUGU GUACUA GUCCGU AGUUG@LB@3'-UUU...UUAUG C UC AAAGU...UAG-5'@LB@ | |@LB@ 178 127@LB@@LB@@LB@Energy -14.05 kcal/mol@LB@Hybridization Energy -30.6202 kcal/mol@LB@Unfolding Energy - mRNA 5.78851 kcal/mol@LB@Unfolding Energy - sRNA 8.17404 kcal/mol@LB@@LB@Position - mRNA 178 -- 225@LB@Position - sRNA 128 -- 177@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 169 -- 175@LB@ |
55 |
0.005617 |
0.3247 |
b2829 |
ptsP |
-11.41 |
0.146041 |
68 -- 133 |
122 -- 174 |
PEP-protein phosphotransferase enzyme I; GAF domain containing protein |
|
______________68____________________________________________________________134\n______________|_____________________________________________________________|\n___________5'-_______UACACCAGA__U_____G_______AUG___AAGU_________C______G___GGUGG...UGG-3'\n______________CCAGCAG_________GU_UGA_C_GCUGGCG___GGU____UACUGGUAU_CGGUCA_ACA\n______________|||||||_________||_|:|_|_|||||||___|:|____:||:::||:_|:||||_|||\n______________GGUCGUC_________CA_AUU_G_CGACCGC___CUA____GUGGUUAUG_GUCAGU_UGU\n___3'-UUUUUUUU__________________U___A_A_______CCA___AAAU_________A______G___ACUAC...UAG-5'\n_____________|______________________________________________________________|\n_____________175____________________________________________________________121\n |
25 -- 31 |
197 -- 203 |
-46.8098 kcal/mol |
17.4414 kcal/mol |
18.4949 kcal/mol |
68 134@LB@ | |@LB@ 5'- UACACCAGA U G AUG AAGU C G GGUGG...UGG-3'@LB@ CCAGCAG GU UGA C GCUGGCG GGU UACUGGUAU CGGUCA ACA@LB@ ||||||| || |:| | ||||||| |:| :||:::||: |:|||| |||@LB@ GGUCGUC CA AUU G CGACCGC CUA GUGGUUAUG GUCAGU UGU@LB@ 3'-UUUUUUUU U A A CCA AAAU A G ACUAC...UAG-5'@LB@ | |@LB@ 175 121@LB@@LB@@LB@Energy -11.41 kcal/mol@LB@Hybridization Energy -46.8098 kcal/mol@LB@Unfolding Energy - mRNA 17.4414 kcal/mol@LB@Unfolding Energy - sRNA 18.4949 kcal/mol@LB@@LB@Position - mRNA 68 -- 133@LB@Position - sRNA 122 -- 174@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 197 -- 203@LB@ |
8 |
0.0005643 |
0.1842 |
b2557 |
purL |
-10.01 |
0.273478 |
129 -- 143 |
111 -- 124 |
phosphoribosylformyl-glycineamide synthetase |
|
_____________128______________144\n_____________|________________|\n5'-AGG...UUGGG________AA______AAGAC...UUU-3'\n______________UACACCGA__GCUUAG\n______________||||||:|__:||:||\n______________AUGUGGUU__UGAGUC\n3'-UUU...CUAAA________A_______AGUGU...UAG-5'\n_____________|________________|\n_____________125______________110\n |
172 -- 178 |
181 -- 187 |
-14.8421 kcal/mol |
1.97129 kcal/mol |
3.669 kcal/mol |
128 144@LB@ | |@LB@5'-AGG...UUGGG AA AAGAC...UUU-3'@LB@ UACACCGA GCUUAG@LB@ ||||||:| :||:||@LB@ AUGUGGUU UGAGUC@LB@3'-UUU...CUAAA A AGUGU...UAG-5'@LB@ | |@LB@ 125 110@LB@@LB@@LB@Energy -10.01 kcal/mol@LB@Hybridization Energy -14.8421 kcal/mol@LB@Unfolding Energy - mRNA 1.97129 kcal/mol@LB@Unfolding Energy - sRNA 3.669 kcal/mol@LB@@LB@Position - mRNA 129 -- 143@LB@Position - sRNA 111 -- 124@LB@Position Seed - mRNA 172 -- 178@LB@Position Seed - sRNA 181 -- 187@LB@ |
162 |
0.01805 |
0.3749 |
b2499 |
purM |
-13.07 |
0.067336 |
182 -- 195 |
13 -- 27 |
phosphoribosylaminoimidazole synthetase |
|
_____________181______196\n_____________|________|\n__________5'-U________AUGGU...CGC-3'\n______________AUAUUCAG\n______________|||:||||\n______________UAUGAGUC\n3'-UUU...GUGGU________AGUGU...UAG-5'\n_____________|________|\n_____________28_______12\n |
3 -- 9 |
174 -- 180 |
-7.89877 kcal/mol |
1.882 kcal/mol |
0.273058 kcal/mol |
181 196@LB@ | |@LB@ 5'-U AUGGU...CGC-3'@LB@ AUAUUCAG@LB@ |||:||||@LB@ UAUGAGUC@LB@3'-UUU...GUGGU AGUGU...UAG-5'@LB@ | |@LB@ 28 12@LB@@LB@@LB@Energy -13.07 kcal/mol@LB@Hybridization Energy -7.89877 kcal/mol@LB@Unfolding Energy - mRNA 1.882 kcal/mol@LB@Unfolding Energy - sRNA 0.273058 kcal/mol@LB@@LB@Position - mRNA 182 -- 195@LB@Position - sRNA 13 -- 27@LB@Position Seed - mRNA 3 -- 9@LB@Position Seed - sRNA 174 -- 180@LB@ |
191 |
0.02237 |
0.3833 |
b1658 |
purR |
-11.05 |
0.172432 |
254 -- 265 |
163 -- 174 |
transcriptional repressor hypoxanthine-binding |
|
_____________253_______________266\n_____________|_________________|\n5'-UUU...CUACA___GU____________CAACA...GCA-3'\n______________ACU__GUCACACGUGAU\n______________|||__|||||||:||||\n______________UGA__CAGUGUGUACUA\n3'-UUU...GGUUA___GU____________CGUCC...UAG-5'\n_____________|_________________|\n_____________175_______________162\n |
259 -- 265 |
163 -- 169 |
-20.3148 kcal/mol |
3.57431 kcal/mol |
4.30742 kcal/mol |
253 266@LB@ | |@LB@5'-UUU...CUACA GU CAACA...GCA-3'@LB@ ACU GUCACACGUGAU@LB@ ||| |||||||:||||@LB@ UGA CAGUGUGUACUA@LB@3'-UUU...GGUUA GU CGUCC...UAG-5'@LB@ | |@LB@ 175 162@LB@@LB@@LB@Energy -11.05 kcal/mol@LB@Hybridization Energy -20.3148 kcal/mol@LB@Unfolding Energy - mRNA 3.57431 kcal/mol@LB@Unfolding Energy - sRNA 4.30742 kcal/mol@LB@@LB@Position - mRNA 254 -- 265@LB@Position - sRNA 163 -- 174@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 163 -- 169@LB@ |
79 |
0.008119 |
0.3458 |
b0945 |
pyrD |
-11.48 |
0.141710 |
30 -- 41 |
191 -- 202 |
dihydro-orotate oxidase FMN-linked |
|
_____________29______________________42\n_____________|_______________________|\n5'-UGU...AGCAA_____________A___GA____CGU-3'\n______________UUACGCCG_UAUU_CAG__ACGC\n______________||||:||:_||:|_|||__||:|\n______________AAUGUGGU_AUGA_GUC__UGUG\n3'-UUU...ACUAA________U________AG____UACUA...UAG-5'\n_____________|_______________________|\n_____________203_____________________190\n |
277 -- 283 |
182 -- 188 |
-20.4941 kcal/mol |
3.55802 kcal/mol |
4.91485 kcal/mol |
29 42@LB@ | |@LB@5'-UGU...AGCAA A GA CGU-3'@LB@ UUACGCCG UAUU CAG ACGC@LB@ ||||:||: ||:| ||| ||:|@LB@ AAUGUGGU AUGA GUC UGUG@LB@3'-UUU...ACUAA U AG UACUA...UAG-5'@LB@ | |@LB@ 203 190@LB@@LB@@LB@Energy -11.48 kcal/mol@LB@Hybridization Energy -20.4941 kcal/mol@LB@Unfolding Energy - mRNA 3.55802 kcal/mol@LB@Unfolding Energy - sRNA 4.91485 kcal/mol@LB@@LB@Position - mRNA 30 -- 41@LB@Position - sRNA 191 -- 202@LB@Position Seed - mRNA 277 -- 283@LB@Position Seed - sRNA 182 -- 188@LB@ |
73 |
0.007584 |
0.3458 |
b0059 |
rapA |
-13.35 |
0.058963 |
263 -- 277 |
46 -- 60 |
RNA polymerase remodeling/recycling factor ATPase; RNA polymerase-associated ATP-dependent RNA translocase |
|
_____________262_____________278\n_____________|_______________|\n5'-GCU...GGAAC_______________UGCGC...UUU-3'\n______________CGUUGUCGCGGUGGA\n______________||:|||||||||::|\n______________GCGACAGCGCCAUUU\n3'-UUU...UUGAA_______________UAUCA...UAG-5'\n_____________|_______________|\n_____________61______________45\n |
269 -- 275 |
48 -- 54 |
-26.0749 kcal/mol |
7.19742 kcal/mol |
6.07408 kcal/mol |
262 278@LB@ | |@LB@5'-GCU...GGAAC UGCGC...UUU-3'@LB@ CGUUGUCGCGGUGGA@LB@ ||:|||||||||::|@LB@ GCGACAGCGCCAUUU@LB@3'-UUU...UUGAA UAUCA...UAG-5'@LB@ | |@LB@ 61 45@LB@@LB@@LB@Energy -13.35 kcal/mol@LB@Hybridization Energy -26.0749 kcal/mol@LB@Unfolding Energy - mRNA 7.19742 kcal/mol@LB@Unfolding Energy - sRNA 6.07408 kcal/mol@LB@@LB@Position - mRNA 263 -- 277@LB@Position - sRNA 46 -- 60@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 48 -- 54@LB@ |
193 |
0.0225 |
0.3833 |
b3751 |
rbsB |
-14.76 |
0.030308 |
38 -- 56 |
74 -- 93 |
D-ribose ABC transporter periplasmic binding protein; ribose chemotaxis receptor |
|
_____________37________________________________________________57\n_____________|_________________________________________________|\n___5'-GCGGUACG_____GG______GAAAA_____CA___U____________________UUAAU...UCU-3'\n______________AGUCU__CGGGCG_____GGUCG__UUG_UGGGACGUU_GAUCGGCGCA\n______________||||:__|::||:_____::|||__|||_|||||||:|_:|:|::||||\n______________UCAGG__GUUCGU_____UUAGC__AAC_ACCCUGCGA_UUGGUUGCGU\n3'-UUU...CGUAG_____AA______ACCAA____________________A__________UGGUC...UAG-5'\n_____________|_________________________________________________|\n_____________94________________________________________________73\n |
40 -- 46 |
85 -- 91 |
-47.7546 kcal/mol |
17.619 kcal/mol |
19.1533 kcal/mol |
37 57@LB@ | |@LB@ 5'-GCGGUACG GG GAAAA CA U UUAAU...UCU-3'@LB@ AGUCU CGGGCG GGUCG UUG UGGGACGUU GAUCGGCGCA@LB@ ||||: |::||: ::||| ||| |||||||:| :|:|::||||@LB@ UCAGG GUUCGU UUAGC AAC ACCCUGCGA UUGGUUGCGU@LB@3'-UUU...CGUAG AA ACCAA A UGGUC...UAG-5'@LB@ | |@LB@ 94 73@LB@@LB@@LB@Energy -14.76 kcal/mol@LB@Hybridization Energy -47.7546 kcal/mol@LB@Unfolding Energy - mRNA 17.619 kcal/mol@LB@Unfolding Energy - sRNA 19.1533 kcal/mol@LB@@LB@Position - mRNA 38 -- 56@LB@Position - sRNA 74 -- 93@LB@Position Seed - mRNA 40 -- 46@LB@Position Seed - sRNA 85 -- 91@LB@ |
63 |
0.006154 |
0.3261 |
b3750 |
rbsC |
-15.65 |
0.019915 |
89 -- 120 |
139 -- 174 |
D-ribose ABC transporter permease |
|
_____________88___________________________________121\n_____________|____________________________________|\n5'-GAU...UCAUC___________A_______UC_____GG________UACUC...UCU-3'\n______________GUCAUGCAUGA___GGGCA__UCAGC____GGAAUU\n______________||||::|||||___:||||__|||:|____:|||||\n______________CAGUGUGUACU___UCCGU__AGUUG____UCUUAA\n3'-UUU...UGAGU___________ACG_____UC_____AAAG______CGCCA...UAG-5'\n_____________|____________________________________|\n_____________175__________________________________138\n |
91 -- 97 |
166 -- 172 |
-33.4294 kcal/mol |
9.19626 kcal/mol |
8.8011 kcal/mol |
88 121@LB@ | |@LB@5'-GAU...UCAUC A UC GG UACUC...UCU-3'@LB@ GUCAUGCAUGA GGGCA UCAGC GGAAUU@LB@ ||||::||||| :|||| |||:| :|||||@LB@ CAGUGUGUACU UCCGU AGUUG UCUUAA@LB@3'-UUU...UGAGU ACG UC AAAG CGCCA...UAG-5'@LB@ | |@LB@ 175 138@LB@@LB@@LB@Energy -15.65 kcal/mol@LB@Hybridization Energy -33.4294 kcal/mol@LB@Unfolding Energy - mRNA 9.19626 kcal/mol@LB@Unfolding Energy - sRNA 8.8011 kcal/mol@LB@@LB@Position - mRNA 89 -- 120@LB@Position - sRNA 139 -- 174@LB@Position Seed - mRNA 91 -- 97@LB@Position Seed - sRNA 166 -- 172@LB@ |