47 |
0.002271 |
0.1648 |
b3169 |
nusA |
-13.61 |
0.058009 |
55 -- 79 |
4 -- 28 |
transcription termination/antitermination L factor |
|
_____________54__________________________80\n_____________|___________________________|\n5'-UUG...UCGUA_____CA________UC__________AGACG...CAG-3'\n______________AAUGG__GGGCGUUA____AAAGCGGU\n______________|||||__||:|:|:|____|||||:||\n______________UUACC__CCUGUAGU____UUUCGUCA\n3'-UUU...GUGUU_______________UUCU________CCG-5'\n_____________|___________________________|\n_____________29__________________________3\n |
73 -- 79 |
4 -- 10 |
-21.8237 kcal/mol |
5.69952 kcal/mol |
2.51457 kcal/mol |
54 80@LB@ | |@LB@5'-UUG...UCGUA CA UC AGACG...CAG-3'@LB@ AAUGG GGGCGUUA AAAGCGGU@LB@ ||||| ||:|:|:| |||||:||@LB@ UUACC CCUGUAGU UUUCGUCA@LB@3'-UUU...GUGUU UUCU CCG-5'@LB@ | |@LB@ 29 3@LB@@LB@@LB@Energy -13.61 kcal/mol@LB@Hybridization Energy -21.8237 kcal/mol@LB@Unfolding Energy - mRNA 5.69952 kcal/mol@LB@Unfolding Energy - sRNA 2.51457 kcal/mol@LB@@LB@Position - mRNA 55 -- 79@LB@Position - sRNA 4 -- 28@LB@Position Seed - mRNA 73 -- 79@LB@Position Seed - sRNA 4 -- 10@LB@ |
123 |
0.008923 |
0.2491 |
b3243 |
aaeR |
-15.21 |
0.024673 |
72 -- 99 |
1 -- 34 |
transcriptional regulator for aaeXAB operon |
|
_____________71_________________________________100\n_____________|__________________________________|\n5'-AAC...UGUCG________AA__________________C_____GAGAG...UCA-3'\n______________CCGCAGAG___GGGCAU____GGAAAGC_G_GGC\n______________||:||:|:___||:|||____|:|||||_|_|||\n______________GGUGUUUU___CCUGUA____CUUUUCG_C_CCG\n3'-UUU...CCCGA________ACC______GUUU_______U_A___-5'\n_____________|_________________________________|\n_____________35________________________________1\n |
88 -- 94 |
7 -- 13 |
-28.4227 kcal/mol |
8.94529 kcal/mol |
4.26884 kcal/mol |
71 100@LB@ | |@LB@5'-AAC...UGUCG AA C GAGAG...UCA-3'@LB@ CCGCAGAG GGGCAU GGAAAGC G GGC@LB@ ||:||:|: ||:||| |:||||| | |||@LB@ GGUGUUUU CCUGUA CUUUUCG C CCG@LB@3'-UUU...CCCGA ACC GUUU U A -5'@LB@ | |@LB@ 35 1@LB@@LB@@LB@Energy -15.21 kcal/mol@LB@Hybridization Energy -28.4227 kcal/mol@LB@Unfolding Energy - mRNA 8.94529 kcal/mol@LB@Unfolding Energy - sRNA 4.26884 kcal/mol@LB@@LB@Position - mRNA 72 -- 99@LB@Position - sRNA 1 -- 34@LB@Position Seed - mRNA 88 -- 94@LB@Position Seed - sRNA 7 -- 13@LB@ |
198 |
0.01428 |
0.2531 |
b4393 |
trpR |
-20.45 |
0.000581 |
86 -- 104 |
16 -- 34 |
transcriptional repressor tryptophan-binding |
|
_____________85__________________105\n_____________|___________________|\n5'-GAG...GAGCG___________________UUACU...AUC-3'\n______________CCACGGAAUGGGGACGUCG\n______________||||::|||||||||:||:\n______________GGUGUUUUACCCCUGUAGU\n3'-UUU...CCCGA___________________UUCUU...CCG-5'\n_____________|___________________|\n_____________35__________________15\n |
98 -- 104 |
16 -- 22 |
-32.2935 kcal/mol |
7.91935 kcal/mol |
3.92811 kcal/mol |
85 105@LB@ | |@LB@5'-GAG...GAGCG UUACU...AUC-3'@LB@ CCACGGAAUGGGGACGUCG@LB@ ||||::|||||||||:||:@LB@ GGUGUUUUACCCCUGUAGU@LB@3'-UUU...CCCGA UUCUU...CCG-5'@LB@ | |@LB@ 35 15@LB@@LB@@LB@Energy -20.45 kcal/mol@LB@Hybridization Energy -32.2935 kcal/mol@LB@Unfolding Energy - mRNA 7.91935 kcal/mol@LB@Unfolding Energy - sRNA 3.92811 kcal/mol@LB@@LB@Position - mRNA 86 -- 104@LB@Position - sRNA 16 -- 34@LB@Position Seed - mRNA 98 -- 104@LB@Position Seed - sRNA 16 -- 22@LB@ |
22 |
0.0008145 |
0.1243 |
b3574 |
yiaJ |
-21.10 |
0.000313 |
196 -- 241 |
1 -- 32 |
transcriptional repressor for the yiaKLMNO-lyxK-sgbHUE operon |
|
_____________195____________________________________________242\n_____________|______________________________________________|\n5'-CCC...ACGCG____________A_GAAGUGAUGGGAAAA________CG__A____GCAGG...UUG-3'\n______________ACAAAAUGGGGA_A_______________AAAGAGAA__AG_UGGC\n______________||||||||||||_|_______________|||||:||__||_||||\n______________UGUUUUACCCCU_U_______________UUUCUUUU__UC_ACCG\n3'-UUU...CGAGG____________G_AG_____________________CG_______-5'\n_____________|_____________________________________________|\n_____________33____________________________________________1\n |
226 -- 232 |
9 -- 15 |
-30.0936 kcal/mol |
6.45407 kcal/mol |
2.53929 kcal/mol |
195 242@LB@ | |@LB@5'-CCC...ACGCG A GAAGUGAUGGGAAAA CG A GCAGG...UUG-3'@LB@ ACAAAAUGGGGA A AAAGAGAA AG UGGC@LB@ |||||||||||| | |||||:|| || ||||@LB@ UGUUUUACCCCU U UUUCUUUU UC ACCG@LB@3'-UUU...CGAGG G AG CG -5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -21.10 kcal/mol@LB@Hybridization Energy -30.0936 kcal/mol@LB@Unfolding Energy - mRNA 6.45407 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 196 -- 241@LB@Position - sRNA 1 -- 32@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 9 -- 15@LB@ |
68 |
0.003723 |
0.191 |
b3131 |
agaR |
-11.10 |
0.180958 |
280 -- 299 |
5 -- 22 |
transcriptional repressor of the aga regulon |
|
_____________279__________________300\n_____________|____________________|\n5'-CAG...UCUGC____G________UGU____G-3'\n______________GACA_CAAGGGAG___GCAG\n______________||||_|||:|:|:___||||\n______________CUGU_GUUUCUUU___CGUC\n3'-UUU...UACCC____A________U______ACCG-5'\n_____________|____________________|\n_____________23___________________4\n |
286 -- 292 |
10 -- 16 |
-17.5345 kcal/mol |
4.90034 kcal/mol |
1.53637 kcal/mol |
279 300@LB@ | |@LB@5'-CAG...UCUGC G UGU G-3'@LB@ GACA CAAGGGAG GCAG@LB@ |||| |||:|:|: ||||@LB@ CUGU GUUUCUUU CGUC@LB@3'-UUU...UACCC A U ACCG-5'@LB@ | |@LB@ 23 4@LB@@LB@@LB@Energy -11.10 kcal/mol@LB@Hybridization Energy -17.5345 kcal/mol@LB@Unfolding Energy - mRNA 4.90034 kcal/mol@LB@Unfolding Energy - sRNA 1.53637 kcal/mol@LB@@LB@Position - mRNA 280 -- 299@LB@Position - sRNA 5 -- 22@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 10 -- 16@LB@ |
176 |
0.01279 |
0.2504 |
b3980 |
tufB |
-13.59 |
0.058494 |
200 -- 216 |
7 -- 22 |
translation elongation factor EF-Tu 2 |
b3339 |
_____________199_______________217\n_____________|_________________|\n5'-UCC...CAAUC______U__________UUGAA...CUA-3'\n______________GAUGUC_AAAGAAAAGU\n______________||::||_|||||||||:\n______________CUGUAG_UUUCUUUUCG\n3'-UUU...UACCC_________________UCACCG-5'\n_____________|_________________|\n_____________23________________6\n |
210 -- 216 |
7 -- 13 |
-16.0105 kcal/mol |
1.82662 kcal/mol |
0.590875 kcal/mol |
199 217@LB@ | |@LB@5'-UCC...CAAUC U UUGAA...CUA-3'@LB@ GAUGUC AAAGAAAAGU@LB@ ||::|| |||||||||:@LB@ CUGUAG UUUCUUUUCG@LB@3'-UUU...UACCC UCACCG-5'@LB@ | |@LB@ 23 6@LB@@LB@@LB@Energy -13.59 kcal/mol@LB@Hybridization Energy -16.0105 kcal/mol@LB@Unfolding Energy - mRNA 1.82662 kcal/mol@LB@Unfolding Energy - sRNA 0.590875 kcal/mol@LB@@LB@Position - mRNA 200 -- 216@LB@Position - sRNA 7 -- 22@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 7 -- 13@LB@ |
192 |
0.01406 |
0.2529 |
b4220 |
tamA |
-13.04 |
0.076745 |
183 -- 206 |
1 -- 23 |
translocation and assembly module for autotransporter export outer membrane subunit |
|
_____________182______________________207\n_____________|________________________|\n5'-CGC...AAAAA_______C_______AAU___C__UAUAU...GAC-3'\n______________GGAUAUU_AGGAGAA___GUG_GC\n______________|||:||:_|:||:||___|||_||\n______________CCUGUAG_UUCUUUU___CAC_CG\n3'-UUU...UUACC_______U_______CGU______-5'\n_____________|_______________________|\n_____________24______________________1\n |
191 -- 197 |
9 -- 15 |
-18.7095 kcal/mol |
4.09087 kcal/mol |
1.57928 kcal/mol |
182 207@LB@ | |@LB@5'-CGC...AAAAA C AAU C UAUAU...GAC-3'@LB@ GGAUAUU AGGAGAA GUG GC@LB@ |||:||: |:||:|| ||| ||@LB@ CCUGUAG UUCUUUU CAC CG@LB@3'-UUU...UUACC U CGU -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -13.04 kcal/mol@LB@Hybridization Energy -18.7095 kcal/mol@LB@Unfolding Energy - mRNA 4.09087 kcal/mol@LB@Unfolding Energy - sRNA 1.57928 kcal/mol@LB@@LB@Position - mRNA 183 -- 206@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 9 -- 15@LB@ |
186 |
0.01333 |
0.2514 |
b0084 |
ftsI |
-11.80 |
0.135121 |
196 -- 214 |
1 -- 22 |
transpeptidase involved in septal peptidoglycan synthesis; penicillin-binding protein 3 |
|
_____________195____________________215\n_____________|______________________|\n5'-GUU...AACGC_______U__________C___GAAAA...UGG-3'\n______________GACG_CA___GAAAGCAG_GGC\n______________|||:_||___:|||||||_|||\n______________CUGU_GU___UUUUCGUC_CCG\n3'-UUU...UACCC____A__UUC________A___-5'\n_____________|_____________________|\n_____________23____________________1\n |
204 -- 210 |
5 -- 11 |
-21.3841 kcal/mol |
8.04628 kcal/mol |
1.54023 kcal/mol |
195 215@LB@ | |@LB@5'-GUU...AACGC U C GAAAA...UGG-3'@LB@ GACG CA GAAAGCAG GGC@LB@ |||: || :||||||| |||@LB@ CUGU GU UUUUCGUC CCG@LB@3'-UUU...UACCC A UUC A -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -11.80 kcal/mol@LB@Hybridization Energy -21.3841 kcal/mol@LB@Unfolding Energy - mRNA 8.04628 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 196 -- 214@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 5 -- 11@LB@ |
152 |
0.01123 |
0.2504 |
b1872 |
torZ |
-17.40 |
0.006326 |
76 -- 107 |
1 -- 34 |
trimethylamine N-oxide reductase system III catalytic subunit |
b0997 b3551 |
_____________75___________________________________108\n_____________|____________________________________|\n5'-ACG...CAUUG___AA_________________CC_________A__GAAAA...AGA-3'\n______________CCA__GGAAUGGGGGCA_CGAA____AGCA_UG_GC\n______________|||__::|||||||:||_|:||____||||_||_||\n______________GGU__UUUUACCCCUGU_GUUU____UCGU_AC_CG\n3'-UUU...CCCGA___G_____________A____CUUU____C_____-5'\n_____________|___________________________________|\n_____________35__________________________________1\n |
86 -- 92 |
19 -- 25 |
-29.6219 kcal/mol |
7.95271 kcal/mol |
4.26884 kcal/mol |
75 108@LB@ | |@LB@5'-ACG...CAUUG AA CC A GAAAA...AGA-3'@LB@ CCA GGAAUGGGGGCA CGAA AGCA UG GC@LB@ ||| ::|||||||:|| |:|| |||| || ||@LB@ GGU UUUUACCCCUGU GUUU UCGU AC CG@LB@3'-UUU...CCCGA G A CUUU C -5'@LB@ | |@LB@ 35 1@LB@@LB@@LB@Energy -17.40 kcal/mol@LB@Hybridization Energy -29.6219 kcal/mol@LB@Unfolding Energy - mRNA 7.95271 kcal/mol@LB@Unfolding Energy - sRNA 4.26884 kcal/mol@LB@@LB@Position - mRNA 76 -- 107@LB@Position - sRNA 1 -- 34@LB@Position Seed - mRNA 86 -- 92@LB@Position Seed - sRNA 19 -- 25@LB@ |
39 |
0.001912 |
0.1648 |
b2532 |
trmJ |
-14.54 |
0.035636 |
97 -- 121 |
1 -- 23 |
tRNA mC32 mU32 2'-O-methyltransferase SAM-dependent |
|
_____________96________________________122\n_____________|_________________________|\n5'-CGU...UCACU_____________C__G_AAAC___GCAGA...UGU-3'\n______________GGAUGUUAAAGAA_GG_A____GGC\n______________|||::|:||||||_:|_|____|||\n______________CCUGUAGUUUCUU_UC_U____CCG\n3'-UUU...UUACC_____________U__G_CA_____-5'\n_____________|________________________|\n_____________24_______________________1\n |
103 -- 109 |
11 -- 17 |
-19.8008 kcal/mol |
3.67656 kcal/mol |
1.57928 kcal/mol |
96 122@LB@ | |@LB@5'-CGU...UCACU C G AAAC GCAGA...UGU-3'@LB@ GGAUGUUAAAGAA GG A GGC@LB@ |||::|:|||||| :| | |||@LB@ CCUGUAGUUUCUU UC U CCG@LB@3'-UUU...UUACC U G CA -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -14.54 kcal/mol@LB@Hybridization Energy -19.8008 kcal/mol@LB@Unfolding Energy - mRNA 3.67656 kcal/mol@LB@Unfolding Energy - sRNA 1.57928 kcal/mol@LB@@LB@Position - mRNA 97 -- 121@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 103 -- 109@LB@Position Seed - sRNA 11 -- 17@LB@ |