8 |
0.0001267 |
0.05555 |
b2697 |
alaS |
-16.66 |
0.010303 |
247 -- 274 |
1 -- 35 |
alanyl-tRNA synthetase |
|
_____________246_________________________________275\n_____________|___________________________________|\n5'-CCA...CUUUU_______UAA______________________U__CAGCA...ACG-3'\n______________UCCAUAG____GGGACAUCA______GGUAGU_GC\n______________||||:|:____|||||||||______:|:|||_||\n______________AGGUGUU____CCCUGUAGU______UCGUCA_CG\n3'-UUU...ACCCG_______UUAC_________UUCUUU______C__-5'\n_____________|__________________________________|\n_____________36_________________________________1\n |
259 -- 265 |
16 -- 22 |
-29.5579 kcal/mol |
7.86268 kcal/mol |
5.03645 kcal/mol |
246 275@LB@ | |@LB@5'-CCA...CUUUU UAA U CAGCA...ACG-3'@LB@ UCCAUAG GGGACAUCA GGUAGU GC@LB@ ||||:|: ||||||||| :|:||| ||@LB@ AGGUGUU CCCUGUAGU UCGUCA CG@LB@3'-UUU...ACCCG UUAC UUCUUU C -5'@LB@ | |@LB@ 36 1@LB@@LB@@LB@Energy -16.66 kcal/mol@LB@Hybridization Energy -29.5579 kcal/mol@LB@Unfolding Energy - mRNA 7.86268 kcal/mol@LB@Unfolding Energy - sRNA 5.03645 kcal/mol@LB@@LB@Position - mRNA 247 -- 274@LB@Position - sRNA 1 -- 35@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 16 -- 22@LB@ |
189 |
0.01393 |
0.2529 |
b0934 |
ssuC |
-14.25 |
0.041816 |
137 -- 153 |
1 -- 17 |
aliphatic sulfonate ABC transporter permease |
|
_____________136_______________154\n_____________|_________________|\n5'-UGC...AUCCG_____C___________GAAUG...GGC-3'\n______________CAAGG_GAAGCGGUGGC\n______________|||:|_:||||:|||||\n______________GUUUC_UUUCGUCACCG\n3'-UUU...CUGUA_____U___________-5'\n_____________|________________|\n_____________18_______________1\n |
147 -- 153 |
1 -- 7 |
-24.8998 kcal/mol |
9.21593 kcal/mol |
1.43853 kcal/mol |
136 154@LB@ | |@LB@5'-UGC...AUCCG C GAAUG...GGC-3'@LB@ CAAGG GAAGCGGUGGC@LB@ |||:| :||||:|||||@LB@ GUUUC UUUCGUCACCG@LB@3'-UUU...CUGUA U -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -14.25 kcal/mol@LB@Hybridization Energy -24.8998 kcal/mol@LB@Unfolding Energy - mRNA 9.21593 kcal/mol@LB@Unfolding Energy - sRNA 1.43853 kcal/mol@LB@@LB@Position - mRNA 137 -- 153@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 1 -- 7@LB@ |
64 |
0.003422 |
0.1851 |
b4238 |
nrdD |
-18.31 |
0.003326 |
69 -- 106 |
1 -- 34 |
anaerobic ribonucleoside-triphosphate reductase |
|
_____________68_____________________________________107\n_____________|______________________________________|\n5'-UAU...GCUCC________AA__U_C_______U___U______A____GAUUG...UCG-3'\n______________CCACGAAA__GG_G_GGCGUUG_GGA_AAGCGG_UGGC\n______________||||:|||__||_|_|:|:|::_:||_||||:|_||||\n______________GGUGUUUU__CC_C_CUGUAGU_UCU_UUCGUC_ACCG\n3'-UUU...CCCGA________A_____________U___U___________-5'\n_____________|_____________________________________|\n_____________35____________________________________1\n |
84 -- 90 |
16 -- 22 |
-34.2754 kcal/mol |
11.6957 kcal/mol |
4.26884 kcal/mol |
68 107@LB@ | |@LB@5'-UAU...GCUCC AA U C U U A GAUUG...UCG-3'@LB@ CCACGAAA GG G GGCGUUG GGA AAGCGG UGGC@LB@ ||||:||| || | |:|:|:: :|| ||||:| ||||@LB@ GGUGUUUU CC C CUGUAGU UCU UUCGUC ACCG@LB@3'-UUU...CCCGA A U U -5'@LB@ | |@LB@ 35 1@LB@@LB@@LB@Energy -18.31 kcal/mol@LB@Hybridization Energy -34.2754 kcal/mol@LB@Unfolding Energy - mRNA 11.6957 kcal/mol@LB@Unfolding Energy - sRNA 4.26884 kcal/mol@LB@@LB@Position - mRNA 69 -- 106@LB@Position - sRNA 1 -- 34@LB@Position Seed - mRNA 84 -- 90@LB@Position Seed - sRNA 16 -- 22@LB@ |
84 |
0.005241 |
0.2147 |
b2513 |
yfgM |
-12.13 |
0.116945 |
176 -- 204 |
2 -- 26 |
ancillary SecYEG translocon subunit; putative anti-RcsB factor |
|
_____________175___________________________205\n_____________|_____________________________|\n5'-GGC...GUUAC____UUAAGG_________G_CAGC____AAAUU...UUG-3'\n______________UGGG______AAGGAGAAG_A____GUGG\n______________||||______||:||:|||_|____||||\n______________ACCC______UUUCUUUUC_U____CACC\n3'-UUU...GUUUU____CUGUAG_________G_________G-5'\n_____________|_____________________________|\n_____________27____________________________1\n |
188 -- 194 |
8 -- 14 |
-19.1762 kcal/mol |
4.53021 kcal/mol |
2.5184 kcal/mol |
175 205@LB@ | |@LB@5'-GGC...GUUAC UUAAGG G CAGC AAAUU...UUG-3'@LB@ UGGG AAGGAGAAG A GUGG@LB@ |||| ||:||:||| | ||||@LB@ ACCC UUUCUUUUC U CACC@LB@3'-UUU...GUUUU CUGUAG G G-5'@LB@ | |@LB@ 27 1@LB@@LB@@LB@Energy -12.13 kcal/mol@LB@Hybridization Energy -19.1762 kcal/mol@LB@Unfolding Energy - mRNA 4.53021 kcal/mol@LB@Unfolding Energy - sRNA 2.5184 kcal/mol@LB@@LB@Position - mRNA 176 -- 204@LB@Position - sRNA 2 -- 26@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 8 -- 14@LB@ |
19 |
0.000738 |
0.1243 |
b1508 |
hipB |
-18.00 |
0.004180 |
266 -- 295 |
1 -- 32 |
antitoxin of HipAB toxin-antitoxin system |
b1299 b1434 |
_____________265________________________________296\n_____________|__________________________________|\n5'-AUG...CGCCA_________CU___________C___________GAAAA-3'\n______________GCAAAAUGG__GGACG_CAGAG__GAGC__UGGC\n______________:||||||||__||||:_||:||__:|||__||||\n______________UGUUUUACC__CCUGU_GUUUC__UUCG__ACCG\n3'-UUU...CGAGG________________A_____UU____UC____-5'\n_____________|_________________________________|\n_____________33________________________________1\n |
268 -- 274 |
24 -- 30 |
-30.0826 kcal/mol |
9.54799 kcal/mol |
2.53929 kcal/mol |
265 296@LB@ | |@LB@5'-AUG...CGCCA CU C GAAAA-3'@LB@ GCAAAAUGG GGACG CAGAG GAGC UGGC@LB@ :|||||||| ||||: ||:|| :||| ||||@LB@ UGUUUUACC CCUGU GUUUC UUCG ACCG@LB@3'-UUU...CGAGG A UU UC -5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -18.00 kcal/mol@LB@Hybridization Energy -30.0826 kcal/mol@LB@Unfolding Energy - mRNA 9.54799 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 266 -- 295@LB@Position - sRNA 1 -- 32@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 24 -- 30@LB@ |
130 |
0.009344 |
0.2491 |
b2840 |
ygeA |
-9.74 |
0.301486 |
266 -- 295 |
2 -- 29 |
Asp/Glu_racemase family protein |
|
_____________265____________________________296\n_____________|______________________________|\n5'-AAA...UUGAU_____AA_________C__C___UU_____GCUUC-3'\n______________AAAUG__GGCAUUAAA_AG_GGC__GGUGG\n______________|||||__|:|||:|||_|:_:||__:||||\n______________UUUAC__CUGUAGUUU_UU_UCG__UCACC\n3'-UUU...GGUGU_____CC_________C__U__________G-5'\n_____________|______________________________|\n_____________30_____________________________1\n |
275 -- 281 |
14 -- 20 |
-20.8158 kcal/mol |
8.56062 kcal/mol |
2.51906 kcal/mol |
265 296@LB@ | |@LB@5'-AAA...UUGAU AA C C UU GCUUC-3'@LB@ AAAUG GGCAUUAAA AG GGC GGUGG@LB@ ||||| |:|||:||| |: :|| :||||@LB@ UUUAC CUGUAGUUU UU UCG UCACC@LB@3'-UUU...GGUGU CC C U G-5'@LB@ | |@LB@ 30 1@LB@@LB@@LB@Energy -9.74 kcal/mol@LB@Hybridization Energy -20.8158 kcal/mol@LB@Unfolding Energy - mRNA 8.56062 kcal/mol@LB@Unfolding Energy - sRNA 2.51906 kcal/mol@LB@@LB@Position - mRNA 266 -- 295@LB@Position - sRNA 2 -- 29@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 14 -- 20@LB@ |
54 |
0.00267 |
0.1735 |
b0131 |
panD |
-12.96 |
0.079905 |
178 -- 195 |
5 -- 22 |
aspartate 1-decarboxylase |
|
_____________177________________196\n_____________|__________________|\n5'-AUU...UUAAC____GGGU__________AAGUU...UUG-3'\n______________GACA____AGAAAGGUAG\n______________||||____|||||:|:||\n______________CUGU____UCUUUUCGUC\n3'-UUU...UACCC____AGUU__________ACCG-5'\n_____________|__________________|\n_____________23_________________4\n |
189 -- 195 |
5 -- 11 |
-16.4376 kcal/mol |
1.9462 kcal/mol |
1.53637 kcal/mol |
177 196@LB@ | |@LB@5'-AUU...UUAAC GGGU AAGUU...UUG-3'@LB@ GACA AGAAAGGUAG@LB@ |||| |||||:|:||@LB@ CUGU UCUUUUCGUC@LB@3'-UUU...UACCC AGUU ACCG-5'@LB@ | |@LB@ 23 4@LB@@LB@@LB@Energy -12.96 kcal/mol@LB@Hybridization Energy -16.4376 kcal/mol@LB@Unfolding Energy - mRNA 1.9462 kcal/mol@LB@Unfolding Energy - sRNA 1.53637 kcal/mol@LB@@LB@Position - mRNA 178 -- 195@LB@Position - sRNA 5 -- 22@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 5 -- 11@LB@ |
10 |
0.0003274 |
0.1087 |
b1020 |
phoH |
-9.93 |
0.281763 |
74 -- 85 |
48 -- 59 |
ATP-binding protein; putative PhoH family P-loop ATPase |
|
_____________73___________86\n_____________|____________|\n5'-AAU...AUGUC____________UUUUA...AAC-3'\n______________ACUGAAAUGGUG\n______________||:|||||||:|\n______________UGGCUUUACCGC\n3'-UUU...GAACU____________CCCAA...CCG-5'\n_____________|____________|\n_____________60___________47\n |
79 -- 85 |
48 -- 54 |
-17.134 kcal/mol |
3.24305 kcal/mol |
3.96136 kcal/mol |
73 86@LB@ | |@LB@5'-AAU...AUGUC UUUUA...AAC-3'@LB@ ACUGAAAUGGUG@LB@ ||:|||||||:|@LB@ UGGCUUUACCGC@LB@3'-UUU...GAACU CCCAA...CCG-5'@LB@ | |@LB@ 60 47@LB@@LB@@LB@Energy -9.93 kcal/mol@LB@Hybridization Energy -17.134 kcal/mol@LB@Unfolding Energy - mRNA 3.24305 kcal/mol@LB@Unfolding Energy - sRNA 3.96136 kcal/mol@LB@@LB@Position - mRNA 74 -- 85@LB@Position - sRNA 48 -- 59@LB@Position Seed - mRNA 79 -- 85@LB@Position Seed - sRNA 48 -- 54@LB@ |
98 |
0.006107 |
0.2179 |
b3822 |
recQ |
-9.35 |
0.343777 |
185 -- 205 |
1 -- 22 |
ATP-dependent DNA helicase |
|
_____________184_____________________206\n_____________|_______________________|\n5'-CGC...UUUCA___A_______U___U_______GCAGG...UUA-3'\n______________GGC_AUCGGGG_GAA___GUGGC\n______________|:|_|||:::|_:||___|||||\n______________CUG_UAGUUUC_UUU___CACCG\n3'-UUU...UACCC___________U___CGU_____-5'\n_____________|______________________|\n_____________23_____________________1\n |
189 -- 195 |
13 -- 19 |
-17.8698 kcal/mol |
6.98341 kcal/mol |
1.54023 kcal/mol |
184 206@LB@ | |@LB@5'-CGC...UUUCA A U U GCAGG...UUA-3'@LB@ GGC AUCGGGG GAA GUGGC@LB@ |:| |||:::| :|| |||||@LB@ CUG UAGUUUC UUU CACCG@LB@3'-UUU...UACCC U CGU -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -9.35 kcal/mol@LB@Hybridization Energy -17.8698 kcal/mol@LB@Unfolding Energy - mRNA 6.98341 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 185 -- 205@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 13 -- 19@LB@ |
164 |
0.01206 |
0.2504 |
b0882 |
clpA |
-9.12 |
0.369525 |
95 -- 107 |
48 -- 60 |
ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease chaperone activity |
|
_____________94____________108\n_____________|_____________|\n5'-UUU...GCAGA____A________AUGGU...CGC-3'\n______________AACC_AAGUGGCG\n______________||||_||:|||||\n______________UUGG_UUUACCGC\n3'-UUU...GGAAC____C________CCCAA...CCG-5'\n_____________|_____________|\n_____________61____________47\n |
101 -- 107 |
48 -- 54 |
-16.8445 kcal/mol |
3.76103 kcal/mol |
3.96136 kcal/mol |
94 108@LB@ | |@LB@5'-UUU...GCAGA A AUGGU...CGC-3'@LB@ AACC AAGUGGCG@LB@ |||| ||:|||||@LB@ UUGG UUUACCGC@LB@3'-UUU...GGAAC C CCCAA...CCG-5'@LB@ | |@LB@ 61 47@LB@@LB@@LB@Energy -9.12 kcal/mol@LB@Hybridization Energy -16.8445 kcal/mol@LB@Unfolding Energy - mRNA 3.76103 kcal/mol@LB@Unfolding Energy - sRNA 3.96136 kcal/mol@LB@@LB@Position - mRNA 95 -- 107@LB@Position - sRNA 48 -- 60@LB@Position Seed - mRNA 101 -- 107@LB@Position Seed - sRNA 48 -- 54@LB@ |