| 1 |
0 |
0 |
b3961 |
oxyR |
-149.65 |
0.000000 |
1 -- 105 |
1 -- 105 |
oxidative and nitrosative stress transcriptional regulator |
|
______________1________________________________________________________________________________________________________106\n______________|________________________________________________________________________________________________________|\n___________5'-_________________________________________________________________________________________________________UGUGA...GCG-3'\n______________AUCCUGGAGAUCCGCAAAAGUUCACGUUGGCUUUAGUUAUUCGAGUUGAGAAACUCUCGAAACGGGCAGUGACUUCAAGGGUUAAAAGAGGUGCCGCUCCGUUUC\n______________|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\n______________UAGGACCUCUAGGCGUUUUCAAGUGCAACCGAAAUCAAUAAGCUCAACUCUUUGAGAGCUUUGCCCGUCACUGAAGUUCCCAAUUUUCUCCACGGCGAGGCAAAG\n_______3'-CGCC_________________________________________________________________________________________________________-5'\n_____________|________________________________________________________________________________________________________|\n_____________106______________________________________________________________________________________________________1\n |
99 -- 105 |
1 -- 7 |
-211.4 kcal/mol |
28.7244 kcal/mol |
33.0219 kcal/mol |
1 106@LB@ | |@LB@ 5'- UGUGA...GCG-3'@LB@ AUCCUGGAGAUCCGCAAAAGUUCACGUUGGCUUUAGUUAUUCGAGUUGAGAAACUCUCGAAACGGGCAGUGACUUCAAGGGUUAAAAGAGGUGCCGCUCCGUUUC@LB@ |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||@LB@ UAGGACCUCUAGGCGUUUUCAAGUGCAACCGAAAUCAAUAAGCUCAACUCUUUGAGAGCUUUGCCCGUCACUGAAGUUCCCAAUUUUCUCCACGGCGAGGCAAAG@LB@ 3'-CGCC -5'@LB@ | |@LB@ 106 1@LB@@LB@@LB@Energy -149.65 kcal/mol@LB@Hybridization Energy -211.4 kcal/mol@LB@Unfolding Energy - mRNA 28.7244 kcal/mol@LB@Unfolding Energy - sRNA 33.0219 kcal/mol@LB@@LB@Position - mRNA 1 -- 105@LB@Position - sRNA 1 -- 105@LB@Position Seed - mRNA 99 -- 105@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 2 |
0.0001834 |
0.3 |
b2729 |
hypD |
-13.53 |
0.025234 |
75 -- 91 |
71 -- 87 |
hydrogenase maturation protein |
|
_____________74________________92\n_____________|_________________|\n5'-CAG...GUACU___A_____________CCAUG...GCC-3'\n______________GGU_CACGUUGGCUUUG\n______________:||_||||||||||||:\n______________UCA_GUGCAACCGAAAU\n3'-CGC...CGUUU___A_____________CAAUA...AAG-5'\n_____________|_________________|\n_____________88________________70\n |
85 -- 91 |
71 -- 77 |
-22.1935 kcal/mol |
8.09841 kcal/mol |
0.562376 kcal/mol |
74 92@LB@ | |@LB@5'-CAG...GUACU A CCAUG...GCC-3'@LB@ GGU CACGUUGGCUUUG@LB@ :|| ||||||||||||:@LB@ UCA GUGCAACCGAAAU@LB@3'-CGC...CGUUU A CAAUA...AAG-5'@LB@ | |@LB@ 88 70@LB@@LB@@LB@Energy -13.53 kcal/mol@LB@Hybridization Energy -22.1935 kcal/mol@LB@Unfolding Energy - mRNA 8.09841 kcal/mol@LB@Unfolding Energy - sRNA 0.562376 kcal/mol@LB@@LB@Position - mRNA 75 -- 91@LB@Position - sRNA 71 -- 87@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 3 |
0.0006202 |
0.5173 |
b3310 |
rplN |
-11.54 |
0.056896 |
6 -- 16 |
77 -- 87 |
50S ribosomal subunit protein L14 |
|
_____________5___________17\n_____________|___________|\n______5'-ACGCU___________UAGAG...CAG-3'\n______________GGUUCGCGUUG\n______________:||||:|||||\n______________UCAAGUGCAAC\n3'-CGC...CGUUU___________CGAAA...AAG-5'\n_____________|___________|\n_____________88__________76\n |
10 -- 16 |
77 -- 83 |
-15.9171 kcal/mol |
3.86869 kcal/mol |
0.505155 kcal/mol |
5 17@LB@ | |@LB@ 5'-ACGCU UAGAG...CAG-3'@LB@ GGUUCGCGUUG@LB@ :||||:|||||@LB@ UCAAGUGCAAC@LB@3'-CGC...CGUUU CGAAA...AAG-5'@LB@ | |@LB@ 88 76@LB@@LB@@LB@Energy -11.54 kcal/mol@LB@Hybridization Energy -15.9171 kcal/mol@LB@Unfolding Energy - mRNA 3.86869 kcal/mol@LB@Unfolding Energy - sRNA 0.505155 kcal/mol@LB@@LB@Position - mRNA 6 -- 16@LB@Position - sRNA 77 -- 87@LB@Position Seed - mRNA 10 -- 16@LB@Position Seed - sRNA 77 -- 83@LB@ |
| 4 |
0.0006326 |
0.5173 |
b3230 |
rpsI |
-11.95 |
0.048152 |
221 -- 251 |
74 -- 108 |
30S ribosomal subunit protein S9 |
|
_____________220_________________________________252\n_____________|___________________________________|\n5'-GUG...UACUA___CA_____UCG________________CA____CGCGU...GUU-3'\n______________CGG___CUGG____CCGCAAAAGUUC_CG___GCU\n______________|||___||||____||||||||||||_||___|||\n______________GCC___GACC____GGCGUUUUCAAG_GC___CGA\n__________3'-C___UAG____UCUA____________U__AAC___AAUCA...AAG-5'\n_____________|___________________________________|\n_____________109_________________________________73\n |
238 -- 244 |
83 -- 89 |
-33.5849 kcal/mol |
9.75151 kcal/mol |
11.8795 kcal/mol |
220 252@LB@ | |@LB@5'-GUG...UACUA CA UCG CA CGCGU...GUU-3'@LB@ CGG CUGG CCGCAAAAGUUC CG GCU@LB@ ||| |||| |||||||||||| || |||@LB@ GCC GACC GGCGUUUUCAAG GC CGA@LB@ 3'-C UAG UCUA U AAC AAUCA...AAG-5'@LB@ | |@LB@ 109 73@LB@@LB@@LB@Energy -11.95 kcal/mol@LB@Hybridization Energy -33.5849 kcal/mol@LB@Unfolding Energy - mRNA 9.75151 kcal/mol@LB@Unfolding Energy - sRNA 11.8795 kcal/mol@LB@@LB@Position - mRNA 221 -- 251@LB@Position - sRNA 74 -- 108@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 83 -- 89@LB@ |
| 5 |
0.0009313 |
0.5385 |
b3829 |
metE |
-12.51 |
0.038445 |
233 -- 242 |
75 -- 84 |
5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase |
|
_____________232________243\n_____________|__________|\n5'-GAG...UUCCC__________CUGCG...GUG-3'\n______________UCGCGUUGGC\n______________||:|||||||\n______________AGUGCAACCG\n3'-CGC...UUUCA__________AAAUC...AAG-5'\n_____________|__________|\n_____________85_________74\n |
236 -- 242 |
75 -- 81 |
-17.7887 kcal/mol |
4.77726 kcal/mol |
0.505918 kcal/mol |
232 243@LB@ | |@LB@5'-GAG...UUCCC CUGCG...GUG-3'@LB@ UCGCGUUGGC@LB@ ||:|||||||@LB@ AGUGCAACCG@LB@3'-CGC...UUUCA AAAUC...AAG-5'@LB@ | |@LB@ 85 74@LB@@LB@@LB@Energy -12.51 kcal/mol@LB@Hybridization Energy -17.7887 kcal/mol@LB@Unfolding Energy - mRNA 4.77726 kcal/mol@LB@Unfolding Energy - sRNA 0.505918 kcal/mol@LB@@LB@Position - mRNA 233 -- 242@LB@Position - sRNA 75 -- 84@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 75 -- 81@LB@ |
| 6 |
0.001078 |
0.5385 |
b0849 |
grxA |
-11.19 |
0.065759 |
209 -- 232 |
58 -- 81 |
glutaredoxin 1 redox coenzyme for ribonucleotide reductase (RNR1a) |
|
_____________208______________________233\n_____________|________________________|\n5'-AGU...CAAAC____AU_______C__________CCCUU...AUC-3'\n______________CGUU__UUUUGGU_GUUCGGGUUG\n______________||||__:|||:||_:||||:||||\n______________GCAA__GAAAUCA_UAAGCUCAAC\n3'-CGC...CAAGU____CC_______A__________UCUUU...AAG-5'\n_____________|________________________|\n_____________82_______________________57\n |
226 -- 232 |
58 -- 64 |
-21.2762 kcal/mol |
8.79419 kcal/mol |
1.29619 kcal/mol |
208 233@LB@ | |@LB@5'-AGU...CAAAC AU C CCCUU...AUC-3'@LB@ CGUU UUUUGGU GUUCGGGUUG@LB@ |||| :|||:|| :||||:||||@LB@ GCAA GAAAUCA UAAGCUCAAC@LB@3'-CGC...CAAGU CC A UCUUU...AAG-5'@LB@ | |@LB@ 82 57@LB@@LB@@LB@Energy -11.19 kcal/mol@LB@Hybridization Energy -21.2762 kcal/mol@LB@Unfolding Energy - mRNA 8.79419 kcal/mol@LB@Unfolding Energy - sRNA 1.29619 kcal/mol@LB@@LB@Position - mRNA 209 -- 232@LB@Position - sRNA 58 -- 81@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 58 -- 64@LB@ |
| 7 |
0.001275 |
0.5385 |
b2175 |
mepS |
-13.85 |
0.022182 |
178 -- 188 |
25 -- 35 |
murein DD-endopeptidase space-maker hydrolase mutational suppressor of prc thermosensitivity outer membrane lipoprotein weak murein LD-carboxypeptidase |
|
_____________177_________189\n_____________|___________|\n5'-CAA...UUAAG___________AAAAC...CAA-3'\n______________GACUUCAAGGG\n______________|||||||||||\n______________CUGAAGUUCCC\n3'-CGC...CGUCA___________AAUUU...AAG-5'\n_____________|___________|\n_____________36__________24\n |
182 -- 188 |
25 -- 31 |
-19.9152 kcal/mol |
2.73903 kcal/mol |
3.32958 kcal/mol |
177 189@LB@ | |@LB@5'-CAA...UUAAG AAAAC...CAA-3'@LB@ GACUUCAAGGG@LB@ |||||||||||@LB@ CUGAAGUUCCC@LB@3'-CGC...CGUCA AAUUU...AAG-5'@LB@ | |@LB@ 36 24@LB@@LB@@LB@Energy -13.85 kcal/mol@LB@Hybridization Energy -19.9152 kcal/mol@LB@Unfolding Energy - mRNA 2.73903 kcal/mol@LB@Unfolding Energy - sRNA 3.32958 kcal/mol@LB@@LB@Position - mRNA 178 -- 188@LB@Position - sRNA 25 -- 35@LB@Position Seed - mRNA 182 -- 188@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 8 |
0.001355 |
0.5385 |
b3915 |
fieF |
-13.87 |
0.021962 |
2 -- 39 |
50 -- 90 |
ferrous iron and zinc transporter |
|
_____________1_____________________________________________40\n_____________|_____________________________________________|\n__________5'-A_________U_____AA___A_____________A_U__C_____ACGUU...AUA-3'\n______________AAAAGUUCA_CGUUG__GCU________UUGAGU_G_AG_AACUC\n______________|||||||||_|||||__|||________|:||||_|_||_|||||\n______________UUUUCAAGU_GCAAC__CGA________AGCUCA_C_UC_UUGAG\n3'-CGC...AGGCG____________________AAUCAAUA______A____U_____AGCUU...AAG-5'\n_____________|_____________________________________________|\n_____________91____________________________________________49\n |
4 -- 10 |
82 -- 88 |
-26.5193 kcal/mol |
8.24047 kcal/mol |
4.40801 kcal/mol |
1 40@LB@ | |@LB@ 5'-A U AA A A U C ACGUU...AUA-3'@LB@ AAAAGUUCA CGUUG GCU UUGAGU G AG AACUC@LB@ ||||||||| ||||| ||| |:|||| | || |||||@LB@ UUUUCAAGU GCAAC CGA AGCUCA C UC UUGAG@LB@3'-CGC...AGGCG AAUCAAUA A U AGCUU...AAG-5'@LB@ | |@LB@ 91 49@LB@@LB@@LB@Energy -13.87 kcal/mol@LB@Hybridization Energy -26.5193 kcal/mol@LB@Unfolding Energy - mRNA 8.24047 kcal/mol@LB@Unfolding Energy - sRNA 4.40801 kcal/mol@LB@@LB@Position - mRNA 2 -- 39@LB@Position - sRNA 50 -- 90@LB@Position Seed - mRNA 4 -- 10@LB@Position Seed - sRNA 82 -- 88@LB@ |
| 9 |
0.0016 |
0.5385 |
b1709 |
btuD |
-9.25 |
0.141890 |
185 -- 194 |
75 -- 84 |
vitamin B12 ABC transporter ATPase |
|
_____________184________195\n_____________|__________|\n5'-GCA...UAAAC_G________AAAAU...GGC-3'\n______________U_GCGUUGGC\n______________|_:|||||||\n______________A_UGCAACCG\n3'-CGC...UUUCA_G________AAAUC...AAG-5'\n_____________|__________|\n_____________85_________74\n |
188 -- 194 |
75 -- 81 |
-15.1998 kcal/mol |
5.44246 kcal/mol |
0.505918 kcal/mol |
184 195@LB@ | |@LB@5'-GCA...UAAAC G AAAAU...GGC-3'@LB@ U GCGUUGGC@LB@ | :|||||||@LB@ A UGCAACCG@LB@3'-CGC...UUUCA G AAAUC...AAG-5'@LB@ | |@LB@ 85 74@LB@@LB@@LB@Energy -9.25 kcal/mol@LB@Hybridization Energy -15.1998 kcal/mol@LB@Unfolding Energy - mRNA 5.44246 kcal/mol@LB@Unfolding Energy - sRNA 0.505918 kcal/mol@LB@@LB@Position - mRNA 185 -- 194@LB@Position - sRNA 75 -- 84@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 75 -- 81@LB@ |
| 10 |
0.001846 |
0.5385 |
b2099 |
yegU |
-13.29 |
0.027829 |
185 -- 270 |
5 -- 83 |
ADP-ribosylglycohydrolase family protein |
|
_____________184_________________________________________________________________________________________271\n_____________|___________________________________________________________________________________________|\n5'-GUG...GUUGA___AAG__GA_______AA___AAAC____CGU________U__UCUUUAU__________G_______A__C__U____A__________AGCUU...CAC-3'\n______________CAC___GG____AGUUA__UGA____AGAA___AUUCUCGG_GC_______GGGCAG__GC_UUAGGGG_UG_GA_GGGG_UGCC_CUCCG\n______________|||___||____|||||__:||____||||___|:|||||:_:|_______||||||__:|_|:|:|||_|:_:|_|:||_||||_|||||\n______________GUG___CC____UCAAU__GCU____UCUU___UGAGAGCU_UG_______CCCGUC__UG_AGUUCCC_AU_UU_CUCC_ACGG_GAGGC\n3'-CGC...UUCAA___CAA__GAAA_____AA___CAAC_______________U_______________AC__A_______A__U____________C_____AAAG-5'\n_____________|___________________________________________________________________________________________|\n_____________84__________________________________________________________________________________________4\n |
243 -- 249 |
25 -- 31 |
-60.0716 kcal/mol |
25.1194 kcal/mol |
21.6578 kcal/mol |
184 271@LB@ | |@LB@5'-GUG...GUUGA AAG GA AA AAAC CGU U UCUUUAU G A C U A AGCUU...CAC-3'@LB@ CAC GG AGUUA UGA AGAA AUUCUCGG GC GGGCAG GC UUAGGGG UG GA GGGG UGCC CUCCG@LB@ ||| || ||||| :|| |||| |:|||||: :| |||||| :| |:|:||| |: :| |:|| |||| |||||@LB@ GUG CC UCAAU GCU UCUU UGAGAGCU UG CCCGUC UG AGUUCCC AU UU CUCC ACGG GAGGC@LB@3'-CGC...UUCAA CAA GAAA AA CAAC U AC A A U C AAAG-5'@LB@ | |@LB@ 84 4@LB@@LB@@LB@Energy -13.29 kcal/mol@LB@Hybridization Energy -60.0716 kcal/mol@LB@Unfolding Energy - mRNA 25.1194 kcal/mol@LB@Unfolding Energy - sRNA 21.6578 kcal/mol@LB@@LB@Position - mRNA 185 -- 270@LB@Position - sRNA 5 -- 83@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 25 -- 31@LB@ |
