| 81 |
0.01462 |
0.5385 |
b3296 |
rpsD |
-10.19 |
0.098165 |
202 -- 218 |
60 -- 78 |
30S ribosomal subunit protein S4 |
|
_____________201_________________219\n_____________|___________________|\n5'-AAG...GAAAA____A____A_________CCUAA...AAA-3'\n______________UGGC___AG_UAUUUGGGU\n______________||||___||_||||:|:||\n______________ACCG___UC_AUAAGCUCA\n3'-CGC...GUGCA____AAA__A_________ACUCU...AAG-5'\n_____________|___________________|\n_____________79__________________59\n |
212 -- 218 |
60 -- 66 |
-14.6837 kcal/mol |
3.69927 kcal/mol |
0.797083 kcal/mol |
201 219@LB@ | |@LB@5'-AAG...GAAAA A A CCUAA...AAA-3'@LB@ UGGC AG UAUUUGGGU@LB@ |||| || ||||:|:||@LB@ ACCG UC AUAAGCUCA@LB@3'-CGC...GUGCA AAA A ACUCU...AAG-5'@LB@ | |@LB@ 79 59@LB@@LB@@LB@Energy -10.19 kcal/mol@LB@Hybridization Energy -14.6837 kcal/mol@LB@Unfolding Energy - mRNA 3.69927 kcal/mol@LB@Unfolding Energy - sRNA 0.797083 kcal/mol@LB@@LB@Position - mRNA 202 -- 218@LB@Position - sRNA 60 -- 78@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 60 -- 66@LB@ |
| 82 |
0.01477 |
0.5385 |
b3527 |
yhjJ |
-9.01 |
0.155560 |
190 -- 221 |
62 -- 91 |
putative periplasmic M16 family chaperone |
|
_____________189_______________________________222\n_____________|_________________________________|\n5'-CUC...UUGAU___________AUGCAG___ACAAAA_______CUUUU...GGC-3'\n______________CAGGGGUUCAC______GGC_______AUUCGA\n______________||:::||||||______|||_______||||||\n______________GUUUUCAAGUG______CCG_______UAAGCU\n3'-CGC...UAGGC___________CAA______AAAUCAA______CAACU...AAG-5'\n_____________|_________________________________|\n_____________92________________________________61\n |
194 -- 200 |
81 -- 87 |
-19.9715 kcal/mol |
6.94165 kcal/mol |
4.01597 kcal/mol |
189 222@LB@ | |@LB@5'-CUC...UUGAU AUGCAG ACAAAA CUUUU...GGC-3'@LB@ CAGGGGUUCAC GGC AUUCGA@LB@ ||:::|||||| ||| ||||||@LB@ GUUUUCAAGUG CCG UAAGCU@LB@3'-CGC...UAGGC CAA AAAUCAA CAACU...AAG-5'@LB@ | |@LB@ 92 61@LB@@LB@@LB@Energy -9.01 kcal/mol@LB@Hybridization Energy -19.9715 kcal/mol@LB@Unfolding Energy - mRNA 6.94165 kcal/mol@LB@Unfolding Energy - sRNA 4.01597 kcal/mol@LB@@LB@Position - mRNA 190 -- 221@LB@Position - sRNA 62 -- 91@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 81 -- 87@LB@ |
| 83 |
0.01501 |
0.5385 |
b2114 |
metG |
-6.55 |
0.379655 |
47 -- 64 |
63 -- 79 |
methionyl-tRNA synthetase |
|
_____________46_________________65\n_____________|__________________|\n5'-AUU...GUGAU_____CUG__A_______UUCAU...AUG-3'\n______________UUGGC___GG_UUGUUCG\n______________|||||___:|_||:||||\n______________AACCG___UC_AAUAAGC\n3'-CGC...AGUGC_____AAA__________UCAAC...AAG-5'\n_____________|__________________|\n_____________80_________________62\n |
58 -- 64 |
63 -- 69 |
-14.0866 kcal/mol |
6.80006 kcal/mol |
0.735636 kcal/mol |
46 65@LB@ | |@LB@5'-AUU...GUGAU CUG A UUCAU...AUG-3'@LB@ UUGGC GG UUGUUCG@LB@ ||||| :| ||:||||@LB@ AACCG UC AAUAAGC@LB@3'-CGC...AGUGC AAA UCAAC...AAG-5'@LB@ | |@LB@ 80 62@LB@@LB@@LB@Energy -6.55 kcal/mol@LB@Hybridization Energy -14.0866 kcal/mol@LB@Unfolding Energy - mRNA 6.80006 kcal/mol@LB@Unfolding Energy - sRNA 0.735636 kcal/mol@LB@@LB@Position - mRNA 47 -- 64@LB@Position - sRNA 63 -- 79@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 63 -- 69@LB@ |
| 84 |
0.01516 |
0.5385 |
b1871 |
cmoB |
-9.91 |
0.109770 |
166 -- 183 |
71 -- 87 |
tRNA (cmo5U34)-carboxymethyltransferase carboxy-SAM-dependent |
|
_____________165________________184\n_____________|__________________|\n5'-CAC...ACUUU_______U_G____A___AAAGC...AGC-3'\n______________GGUUCAC_G_UGGC_UUA\n______________:||||||_|_||||_|||\n______________UCAAGUG_C_ACCG_AAU\n3'-CGC...CGUUU_________A____A___CAAUA...AAG-5'\n_____________|__________________|\n_____________88_________________70\n |
166 -- 172 |
81 -- 87 |
-14.4863 kcal/mol |
4.01825 kcal/mol |
0.562376 kcal/mol |
165 184@LB@ | |@LB@5'-CAC...ACUUU U G A AAAGC...AGC-3'@LB@ GGUUCAC G UGGC UUA@LB@ :|||||| | |||| |||@LB@ UCAAGUG C ACCG AAU@LB@3'-CGC...CGUUU A A CAAUA...AAG-5'@LB@ | |@LB@ 88 70@LB@@LB@@LB@Energy -9.91 kcal/mol@LB@Hybridization Energy -14.4863 kcal/mol@LB@Unfolding Energy - mRNA 4.01825 kcal/mol@LB@Unfolding Energy - sRNA 0.562376 kcal/mol@LB@@LB@Position - mRNA 166 -- 183@LB@Position - sRNA 71 -- 87@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 81 -- 87@LB@ |
| 85 |
0.01519 |
0.5385 |
b0094 |
ftsA |
-12.00 |
0.047343 |
234 -- 271 |
69 -- 107 |
ATP-binding cell division FtsK recruitment protein |
|
_____________233__________________________________________272\n_____________|____________________________________________|\n5'-AAU...UAGUA_____________UGGUA___________GC_____________AGGGG...UCA-3'\n______________GGA__CUGGAGAU_____CCGCGAAGGUU__C____GCUUUAGU\n______________|||__||||||||_____||||:||:|||__|____||||||||\n______________CCU__GACCUCUA_____GGCGUUUUCAA__G____CGAAAUCA\n_________3'-CG___AG________________________GU_CAAC________AUAAG...AAG-5'\n_____________|____________________________________________|\n_____________108__________________________________________68\n |
265 -- 271 |
69 -- 75 |
-38.6824 kcal/mol |
14.7528 kcal/mol |
11.9342 kcal/mol |
233 272@LB@ | |@LB@5'-AAU...UAGUA UGGUA GC AGGGG...UCA-3'@LB@ GGA CUGGAGAU CCGCGAAGGUU C GCUUUAGU@LB@ ||| |||||||| ||||:||:||| | ||||||||@LB@ CCU GACCUCUA GGCGUUUUCAA G CGAAAUCA@LB@ 3'-CG AG GU CAAC AUAAG...AAG-5'@LB@ | |@LB@ 108 68@LB@@LB@@LB@Energy -12.00 kcal/mol@LB@Hybridization Energy -38.6824 kcal/mol@LB@Unfolding Energy - mRNA 14.7528 kcal/mol@LB@Unfolding Energy - sRNA 11.9342 kcal/mol@LB@@LB@Position - mRNA 234 -- 271@LB@Position - sRNA 69 -- 107@LB@Position Seed - mRNA 265 -- 271@LB@Position Seed - sRNA 69 -- 75@LB@ |
| 86 |
0.01521 |
0.5385 |
b0605 |
ahpC |
-11.47 |
0.058587 |
74 -- 93 |
73 -- 89 |
alkyl hydroperoxide reductase C22 subunit |
|
_____________73___________________94\n_____________|____________________|\n5'-ACC...GGUGC_________AAA____U___ACGAA...GGA-3'\n______________AAAGUUCAC___GUUG_CUU\n______________|||||||||___||||_|||\n______________UUUCAAGUG___CAAC_GAA\n3'-CGC...GGCGU________________C___AUCAA...AAG-5'\n_____________|____________________|\n_____________90___________________72\n |
76 -- 82 |
81 -- 87 |
-14.6327 kcal/mol |
2.64398 kcal/mol |
0.517627 kcal/mol |
73 94@LB@ | |@LB@5'-ACC...GGUGC AAA U ACGAA...GGA-3'@LB@ AAAGUUCAC GUUG CUU@LB@ ||||||||| |||| |||@LB@ UUUCAAGUG CAAC GAA@LB@3'-CGC...GGCGU C AUCAA...AAG-5'@LB@ | |@LB@ 90 72@LB@@LB@@LB@Energy -11.47 kcal/mol@LB@Hybridization Energy -14.6327 kcal/mol@LB@Unfolding Energy - mRNA 2.64398 kcal/mol@LB@Unfolding Energy - sRNA 0.517627 kcal/mol@LB@@LB@Position - mRNA 74 -- 93@LB@Position - sRNA 73 -- 89@LB@Position Seed - mRNA 76 -- 82@LB@Position Seed - sRNA 81 -- 87@LB@ |
| 87 |
0.01529 |
0.5385 |
b3636 |
rpmG |
-10.80 |
0.076825 |
199 -- 224 |
53 -- 84 |
50S ribosomal subunit protein L33 |
|
_____________198______________________________225\n_____________|________________________________|\n5'-CAC...AUAAA___________AA__G________________AUCAA...AAC-3'\n______________UCA___UGGCU__AG_UAUUCG___UGAGAAA\n______________|||___|||||__||_||||||___|||||||\n______________AGU___ACCGA__UC_AUAAGC___ACUCUUU\n3'-CGC...UUUCA___GCA_____AA__A______UCA_______GAGAG...AAG-5'\n_____________|________________________________|\n_____________85_______________________________52\n |
218 -- 224 |
53 -- 59 |
-20.7518 kcal/mol |
5.65772 kcal/mol |
4.29409 kcal/mol |
198 225@LB@ | |@LB@5'-CAC...AUAAA AA G AUCAA...AAC-3'@LB@ UCA UGGCU AG UAUUCG UGAGAAA@LB@ ||| ||||| || |||||| |||||||@LB@ AGU ACCGA UC AUAAGC ACUCUUU@LB@3'-CGC...UUUCA GCA AA A UCA GAGAG...AAG-5'@LB@ | |@LB@ 85 52@LB@@LB@@LB@Energy -10.80 kcal/mol@LB@Hybridization Energy -20.7518 kcal/mol@LB@Unfolding Energy - mRNA 5.65772 kcal/mol@LB@Unfolding Energy - sRNA 4.29409 kcal/mol@LB@@LB@Position - mRNA 199 -- 224@LB@Position - sRNA 53 -- 84@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 88 |
0.01545 |
0.5385 |
b3009 |
yghB |
-9.13 |
0.148475 |
202 -- 216 |
61 -- 78 |
general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter |
|
_____________201________________217\n_____________|__________________|\n5'-UCU...GUCCA_______________A__AUAUC...UUG-3'\n______________UGGCU___GUUAUUC_AG\n______________|||||___|||||||_||\n______________ACCGA___CAAUAAG_UC\n3'-CGC...GUGCA_____AAU_______C__AACUC...AAG-5'\n_____________|__________________|\n_____________79_________________60\n |
207 -- 213 |
64 -- 70 |
-14.1767 kcal/mol |
4.24529 kcal/mol |
0.796888 kcal/mol |
201 217@LB@ | |@LB@5'-UCU...GUCCA A AUAUC...UUG-3'@LB@ UGGCU GUUAUUC AG@LB@ ||||| ||||||| ||@LB@ ACCGA CAAUAAG UC@LB@3'-CGC...GUGCA AAU C AACUC...AAG-5'@LB@ | |@LB@ 79 60@LB@@LB@@LB@Energy -9.13 kcal/mol@LB@Hybridization Energy -14.1767 kcal/mol@LB@Unfolding Energy - mRNA 4.24529 kcal/mol@LB@Unfolding Energy - sRNA 0.796888 kcal/mol@LB@@LB@Position - mRNA 202 -- 216@LB@Position - sRNA 61 -- 78@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 64 -- 70@LB@ |
| 89 |
0.01549 |
0.5385 |
b3147 |
lpoA |
-11.44 |
0.059349 |
235 -- 255 |
64 -- 83 |
OM lipoprotein stimulator of MrcA transpeptidase |
|
_____________234___________________256\n_____________|_____________________|\n5'-UAU...AGCCG_______U__GCCU_______UGGCA...AUC-3'\n______________CGCGUUG_CU____GUUGUUC\n______________|:|||||_||____|||:|||\n______________GUGCAAC_GA____CAAUAAG\n3'-CGC...UUCAA_______C__AAU________CUCAA...AAG-5'\n_____________|_____________________|\n_____________84____________________63\n |
249 -- 255 |
64 -- 70 |
-16.9353 kcal/mol |
4.93537 kcal/mol |
0.560651 kcal/mol |
234 256@LB@ | |@LB@5'-UAU...AGCCG U GCCU UGGCA...AUC-3'@LB@ CGCGUUG CU GUUGUUC@LB@ |:||||| || |||:|||@LB@ GUGCAAC GA CAAUAAG@LB@3'-CGC...UUCAA C AAU CUCAA...AAG-5'@LB@ | |@LB@ 84 63@LB@@LB@@LB@Energy -11.44 kcal/mol@LB@Hybridization Energy -16.9353 kcal/mol@LB@Unfolding Energy - mRNA 4.93537 kcal/mol@LB@Unfolding Energy - sRNA 0.560651 kcal/mol@LB@@LB@Position - mRNA 235 -- 255@LB@Position - sRNA 64 -- 83@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 64 -- 70@LB@ |
| 90 |
0.01553 |
0.5385 |
b1043 |
csgC |
-15.92 |
0.009464 |
100 -- 115 |
69 -- 84 |
curli assembly protein |
|
_____________99_______________116\n_____________|________________|\n5'-GUG...GUGAC___G____________AACAA...UUA-3'\n______________UCA_GUUGGCUUUGGU\n______________|||_|||||||||:||\n______________AGU_CAACCGAAAUCA\n3'-CGC...UUUCA___G____________AUAAG...AAG-5'\n_____________|________________|\n_____________85_______________68\n |
109 -- 115 |
69 -- 75 |
-23.6243 kcal/mol |
7.14442 kcal/mol |
0.563592 kcal/mol |
99 116@LB@ | |@LB@5'-GUG...GUGAC G AACAA...UUA-3'@LB@ UCA GUUGGCUUUGGU@LB@ ||| |||||||||:||@LB@ AGU CAACCGAAAUCA@LB@3'-CGC...UUUCA G AUAAG...AAG-5'@LB@ | |@LB@ 85 68@LB@@LB@@LB@Energy -15.92 kcal/mol@LB@Hybridization Energy -23.6243 kcal/mol@LB@Unfolding Energy - mRNA 7.14442 kcal/mol@LB@Unfolding Energy - sRNA 0.563592 kcal/mol@LB@@LB@Position - mRNA 100 -- 115@LB@Position - sRNA 69 -- 84@LB@Position Seed - mRNA 109 -- 115@LB@Position Seed - sRNA 69 -- 75@LB@ |
