| 31 |
0.005384 |
0.5385 |
b0159 |
mtn |
-14.65 |
0.015942 |
9 -- 52 |
71 -- 108 |
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase |
|
_____________8____________________________________________53\n_____________|____________________________________________|\n___5'-GAUACGCC__C____G__CUC_A____________UC_______C_______ACGCC...UCU-3'\n______________CG_GAUC_CU___G_AGAUCCGCAGGA__UCAUGUU_GGUUUUA\n______________||_||||_||___|_|||||||||::|__|||:|||_||:||||\n______________GC_CUAG_GA___C_UCUAGGCGUUUU__AGUGCAA_CCGAAAU\n__________3'-C__________C________________CA_______________CAAUA...AAG-5'\n_____________|____________________________________________|\n_____________109__________________________________________70\n |
46 -- 52 |
71 -- 77 |
-39.2779 kcal/mol |
12.7007 kcal/mol |
11.9275 kcal/mol |
8 53@LB@ | |@LB@ 5'-GAUACGCC C G CUC A UC C ACGCC...UCU-3'@LB@ CG GAUC CU G AGAUCCGCAGGA UCAUGUU GGUUUUA@LB@ || |||| || | |||||||||::| |||:||| ||:||||@LB@ GC CUAG GA C UCUAGGCGUUUU AGUGCAA CCGAAAU@LB@ 3'-C C CA CAAUA...AAG-5'@LB@ | |@LB@ 109 70@LB@@LB@@LB@Energy -14.65 kcal/mol@LB@Hybridization Energy -39.2779 kcal/mol@LB@Unfolding Energy - mRNA 12.7007 kcal/mol@LB@Unfolding Energy - sRNA 11.9275 kcal/mol@LB@@LB@Position - mRNA 9 -- 52@LB@Position - sRNA 71 -- 108@LB@Position Seed - mRNA 46 -- 52@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 32 |
0.005403 |
0.5385 |
b0951 |
pqiB |
-10.24 |
0.095947 |
95 -- 108 |
69 -- 82 |
paraquat-inducible SoxRS-regulated MCE domain protein |
|
_____________94_____________109\n_____________|______________|\n5'-CUG...CAUUA_____U________CGUCA...UUC-3'\n______________AUGUU_GCUUUAGU\n______________|:|||_||||||||\n______________UGCAA_CGAAAUCA\n3'-CGC...UCAAG_____C________AUAAG...AAG-5'\n_____________|______________|\n_____________83_____________68\n |
102 -- 108 |
69 -- 75 |
-13.4891 kcal/mol |
2.8545 kcal/mol |
0.389912 kcal/mol |
94 109@LB@ | |@LB@5'-CUG...CAUUA U CGUCA...UUC-3'@LB@ AUGUU GCUUUAGU@LB@ |:||| ||||||||@LB@ UGCAA CGAAAUCA@LB@3'-CGC...UCAAG C AUAAG...AAG-5'@LB@ | |@LB@ 83 68@LB@@LB@@LB@Energy -10.24 kcal/mol@LB@Hybridization Energy -13.4891 kcal/mol@LB@Unfolding Energy - mRNA 2.8545 kcal/mol@LB@Unfolding Energy - sRNA 0.389912 kcal/mol@LB@@LB@Position - mRNA 95 -- 108@LB@Position - sRNA 69 -- 82@LB@Position Seed - mRNA 102 -- 108@LB@Position Seed - sRNA 69 -- 75@LB@ |
| 33 |
0.006009 |
0.5385 |
b1264 |
trpE |
-12.63 |
0.036478 |
39 -- 48 |
79 -- 88 |
component I of anthranilate synthase |
|
_____________38_________49\n_____________|__________|\n5'-UGU...UACGC__________AAAAA...CGG-3'\n______________AAGUUCACGU\n______________||||||||||\n______________UUCAAGUGCA\n3'-CGC...GCGUU__________ACCGA...AAG-5'\n_____________|__________|\n_____________89_________78\n |
42 -- 48 |
79 -- 85 |
-13.8612 kcal/mol |
0.721964 kcal/mol |
0.505265 kcal/mol |
38 49@LB@ | |@LB@5'-UGU...UACGC AAAAA...CGG-3'@LB@ AAGUUCACGU@LB@ ||||||||||@LB@ UUCAAGUGCA@LB@3'-CGC...GCGUU ACCGA...AAG-5'@LB@ | |@LB@ 89 78@LB@@LB@@LB@Energy -12.63 kcal/mol@LB@Hybridization Energy -13.8612 kcal/mol@LB@Unfolding Energy - mRNA 0.721964 kcal/mol@LB@Unfolding Energy - sRNA 0.505265 kcal/mol@LB@@LB@Position - mRNA 39 -- 48@LB@Position - sRNA 79 -- 88@LB@Position Seed - mRNA 42 -- 48@LB@Position Seed - sRNA 79 -- 85@LB@ |
| 34 |
0.00612 |
0.5385 |
b1837 |
yebW |
-12.39 |
0.040382 |
203 -- 226 |
63 -- 86 |
uncharacterized protein |
|
_____________202______________________227\n_____________|________________________|\n5'-ACC...GAAAU_______C____ACUUU_______CUACC...UGA-3'\n______________GUUCGCG_UGGU_____UUGUUUG\n______________||||:||_|||:_____||:||:|\n______________CAAGUGC_ACCG_____AAUAAGC\n3'-CGC...GUUUU_______A____AAAUC_______UCAAC...AAG-5'\n_____________|________________________|\n_____________87_______________________62\n |
220 -- 226 |
63 -- 69 |
-18.9836 kcal/mol |
4.90011 kcal/mol |
1.69827 kcal/mol |
202 227@LB@ | |@LB@5'-ACC...GAAAU C ACUUU CUACC...UGA-3'@LB@ GUUCGCG UGGU UUGUUUG@LB@ ||||:|| |||: ||:||:|@LB@ CAAGUGC ACCG AAUAAGC@LB@3'-CGC...GUUUU A AAAUC UCAAC...AAG-5'@LB@ | |@LB@ 87 62@LB@@LB@@LB@Energy -12.39 kcal/mol@LB@Hybridization Energy -18.9836 kcal/mol@LB@Unfolding Energy - mRNA 4.90011 kcal/mol@LB@Unfolding Energy - sRNA 1.69827 kcal/mol@LB@@LB@Position - mRNA 203 -- 226@LB@Position - sRNA 63 -- 86@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 63 -- 69@LB@ |
| 35 |
0.006586 |
0.5385 |
b2351 |
gtrB |
-12.36 |
0.040837 |
174 -- 213 |
48 -- 89 |
CPS-53 (KpLE1) prophage; bactoprenol glucosyl transferase |
|
_____________173________________________________________214\n_____________|__________________________________________|\n5'-GCA...UAUUC_____________U______GG__G___AA___A__UA____UUGUA...AAG-3'\n______________AAAGUUCAU__UG_CUUUAG__AU_CGA__UGA_GA__UCUC\n______________||||||||:__||_||||||__||_|||__|||_:|__||||\n______________UUUCAAGUG__AC_GAAAUC__UA_GCU__ACU_UU__AGAG\n3'-CGC...GGCGU_________CA__C______AA__A___CA___C__UG____CUUUG...AAG-5'\n_____________|__________________________________________|\n_____________90_________________________________________47\n |
176 -- 182 |
81 -- 87 |
-27.281 kcal/mol |
10.5075 kcal/mol |
4.41572 kcal/mol |
173 214@LB@ | |@LB@5'-GCA...UAUUC U GG G AA A UA UUGUA...AAG-3'@LB@ AAAGUUCAU UG CUUUAG AU CGA UGA GA UCUC@LB@ ||||||||: || |||||| || ||| ||| :| ||||@LB@ UUUCAAGUG AC GAAAUC UA GCU ACU UU AGAG@LB@3'-CGC...GGCGU CA C AA A CA C UG CUUUG...AAG-5'@LB@ | |@LB@ 90 47@LB@@LB@@LB@Energy -12.36 kcal/mol@LB@Hybridization Energy -27.281 kcal/mol@LB@Unfolding Energy - mRNA 10.5075 kcal/mol@LB@Unfolding Energy - sRNA 4.41572 kcal/mol@LB@@LB@Position - mRNA 174 -- 213@LB@Position - sRNA 48 -- 89@LB@Position Seed - mRNA 176 -- 182@LB@Position Seed - sRNA 81 -- 87@LB@ |
| 36 |
0.006672 |
0.5385 |
b3956 |
ppc |
-10.31 |
0.093393 |
270 -- 282 |
76 -- 88 |
phosphoenolpyruvate carboxylase |
|
_____________269___________283\n_____________|_____________|\n5'-CUU...CCAUC___GA________GAGAA...AAC-3'\n______________AAG__UGCGUUGG\n______________|||__::||||||\n______________UUC__GUGCAACC\n3'-CGC...GCGUU___AA________GAAAU...AAG-5'\n_____________|_____________|\n_____________89____________75\n |
276 -- 282 |
76 -- 82 |
-12.0501 kcal/mol |
1.22517 kcal/mol |
0.512479 kcal/mol |
269 283@LB@ | |@LB@5'-CUU...CCAUC GA GAGAA...AAC-3'@LB@ AAG UGCGUUGG@LB@ ||| ::||||||@LB@ UUC GUGCAACC@LB@3'-CGC...GCGUU AA GAAAU...AAG-5'@LB@ | |@LB@ 89 75@LB@@LB@@LB@Energy -10.31 kcal/mol@LB@Hybridization Energy -12.0501 kcal/mol@LB@Unfolding Energy - mRNA 1.22517 kcal/mol@LB@Unfolding Energy - sRNA 0.512479 kcal/mol@LB@@LB@Position - mRNA 270 -- 282@LB@Position - sRNA 76 -- 88@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 76 -- 82@LB@ |
| 37 |
0.006912 |
0.5385 |
b3693 |
dgoK |
-11.15 |
0.066742 |
227 -- 259 |
71 -- 102 |
2-oxo-3-deoxygalactonate kinase |
|
_____________226________________________________260\n_____________|__________________________________|\n5'-CAG...AUUGA_________GAC___UCUG_____CC________UCAGG...CAG-3'\n______________CUGGGGAUC___CAA_____CGCG__UGGCUUUA\n______________||||:||||___|||_____|:||__||||||||\n______________GACCUCUAG___GUU_____GUGC__ACCGAAAU\n____3'-CGCCUAG_________GC____UUCAA____A_________CAAUA...AAG-5'\n_____________|__________________________________|\n_____________103________________________________70\n |
253 -- 259 |
71 -- 77 |
-30.6737 kcal/mol |
7.60256 kcal/mol |
11.9219 kcal/mol |
226 260@LB@ | |@LB@5'-CAG...AUUGA GAC UCUG CC UCAGG...CAG-3'@LB@ CUGGGGAUC CAA CGCG UGGCUUUA@LB@ ||||:|||| ||| |:|| ||||||||@LB@ GACCUCUAG GUU GUGC ACCGAAAU@LB@ 3'-CGCCUAG GC UUCAA A CAAUA...AAG-5'@LB@ | |@LB@ 103 70@LB@@LB@@LB@Energy -11.15 kcal/mol@LB@Hybridization Energy -30.6737 kcal/mol@LB@Unfolding Energy - mRNA 7.60256 kcal/mol@LB@Unfolding Energy - sRNA 11.9219 kcal/mol@LB@@LB@Position - mRNA 227 -- 259@LB@Position - sRNA 71 -- 102@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 38 |
0.006978 |
0.5385 |
b3738 |
atpB |
-10.53 |
0.085759 |
128 -- 143 |
69 -- 84 |
F0 sector of membrane-bound ATP synthase subunit a |
|
_____________127______________144\n_____________|________________|\n5'-CAU...GAUCG______G_________GCUGG...ACC-3'\n______________UUACGU_GGUUUUGGU\n______________|:||||_||:|||:||\n______________AGUGCA_CCGAAAUCA\n3'-CGC...UUUCA______A_________AUAAG...AAG-5'\n_____________|________________|\n_____________85_______________68\n |
137 -- 143 |
69 -- 75 |
-16.8893 kcal/mol |
5.79988 kcal/mol |
0.563592 kcal/mol |
127 144@LB@ | |@LB@5'-CAU...GAUCG G GCUGG...ACC-3'@LB@ UUACGU GGUUUUGGU@LB@ |:|||| ||:|||:||@LB@ AGUGCA CCGAAAUCA@LB@3'-CGC...UUUCA A AUAAG...AAG-5'@LB@ | |@LB@ 85 68@LB@@LB@@LB@Energy -10.53 kcal/mol@LB@Hybridization Energy -16.8893 kcal/mol@LB@Unfolding Energy - mRNA 5.79988 kcal/mol@LB@Unfolding Energy - sRNA 0.563592 kcal/mol@LB@@LB@Position - mRNA 128 -- 143@LB@Position - sRNA 69 -- 84@LB@Position Seed - mRNA 137 -- 143@LB@Position Seed - sRNA 69 -- 75@LB@ |
| 39 |
0.007274 |
0.5385 |
b1636 |
pdxY |
-13.08 |
0.030384 |
230 -- 254 |
60 -- 84 |
pyridoxamine kinase |
|
_____________229_______________________255\n_____________|_________________________|\n5'-UAU...CAGUC________U__A____C__G_____AACAG...UCU-3'\n______________UCACGUUG_UU_UGGU_AU_CGGGU\n______________||||||||_:|_|:||_||_||:||\n______________AGUGCAAC_GA_AUCA_UA_GCUCA\n3'-CGC...UUUCA________C__A____A__A_____ACUCU...AAG-5'\n_____________|_________________________|\n_____________85________________________59\n |
231 -- 237 |
77 -- 83 |
-19.8659 kcal/mol |
5.09201 kcal/mol |
1.69371 kcal/mol |
229 255@LB@ | |@LB@5'-UAU...CAGUC U A C G AACAG...UCU-3'@LB@ UCACGUUG UU UGGU AU CGGGU@LB@ |||||||| :| |:|| || ||:||@LB@ AGUGCAAC GA AUCA UA GCUCA@LB@3'-CGC...UUUCA C A A A ACUCU...AAG-5'@LB@ | |@LB@ 85 59@LB@@LB@@LB@Energy -13.08 kcal/mol@LB@Hybridization Energy -19.8659 kcal/mol@LB@Unfolding Energy - mRNA 5.09201 kcal/mol@LB@Unfolding Energy - sRNA 1.69371 kcal/mol@LB@@LB@Position - mRNA 230 -- 254@LB@Position - sRNA 60 -- 84@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 77 -- 83@LB@ |
| 40 |
0.008109 |
0.5385 |
b0784 |
moaD |
-13.26 |
0.028244 |
179 -- 200 |
15 -- 38 |
molybdopterin synthase small subunit |
|
_____________178______________________201\n_____________|________________________|\n5'-GCA...AGUCG_____________________C__AUGAU...AGC-3'\n______________GGUGACUUUAAGG__UGGAAG_GG\n______________:|||||||:||||__|::|||_||\n______________UCACUGAAGUUCC__AUUUUC_CC\n3'-CGC...GCCCG_____________CA______U__ACGGC...AAG-5'\n_____________|________________________|\n_____________39_______________________14\n |
185 -- 191 |
26 -- 32 |
-24.646 kcal/mol |
4.81525 kcal/mol |
6.57247 kcal/mol |
178 201@LB@ | |@LB@5'-GCA...AGUCG C AUGAU...AGC-3'@LB@ GGUGACUUUAAGG UGGAAG GG@LB@ :|||||||:|||| |::||| ||@LB@ UCACUGAAGUUCC AUUUUC CC@LB@3'-CGC...GCCCG CA U ACGGC...AAG-5'@LB@ | |@LB@ 39 14@LB@@LB@@LB@Energy -13.26 kcal/mol@LB@Hybridization Energy -24.646 kcal/mol@LB@Unfolding Energy - mRNA 4.81525 kcal/mol@LB@Unfolding Energy - sRNA 6.57247 kcal/mol@LB@@LB@Position - mRNA 179 -- 200@LB@Position - sRNA 15 -- 38@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 26 -- 32@LB@ |
