141 |
0.02331 |
0.5385 |
b1844 |
exoX |
-7.22 |
0.302733 |
200 -- 217 |
62 -- 83 |
exodeoxyribonuclease 10; DNA exonuclease X |
|
_____________199_____________________218\n_____________|_______________________|\n5'-UUA...CAUGC_______C__A____________UACAG...UGA-3'\n______________CAUGUUG_GC_UUA_____UCGA\n______________||:||||_||_|||_____||||\n______________GUGCAAC_CG_AAU_____AGCU\n3'-CGC...UUCAA__________A___CAAUA____CAACU...AAG-5'\n_____________|_______________________|\n_____________84______________________61\n |
200 -- 206 |
77 -- 83 |
-13.618 kcal/mol |
4.77882 kcal/mol |
1.62352 kcal/mol |
199 218@LB@ | |@LB@5'-UUA...CAUGC C A UACAG...UGA-3'@LB@ CAUGUUG GC UUA UCGA@LB@ ||:|||| || ||| ||||@LB@ GUGCAAC CG AAU AGCU@LB@3'-CGC...UUCAA A CAAUA CAACU...AAG-5'@LB@ | |@LB@ 84 61@LB@@LB@@LB@Energy -7.22 kcal/mol@LB@Hybridization Energy -13.618 kcal/mol@LB@Unfolding Energy - mRNA 4.77882 kcal/mol@LB@Unfolding Energy - sRNA 1.62352 kcal/mol@LB@@LB@Position - mRNA 200 -- 217@LB@Position - sRNA 62 -- 83@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 77 -- 83@LB@ |
142 |
0.02338 |
0.5385 |
b1126 |
potA |
-10.56 |
0.084569 |
277 -- 295 |
14 -- 34 |
spermidine/putrescine ABC transporter ATPase |
|
_____________276___________________296\n_____________|_____________________|\n5'-CAA...CAAAU_______U_____________CAUUC-3'\n______________GCUUUGA_GGU__AAAGAGGU\n______________:|||::|_|||__||||||||\n______________UGAAGUU_CCA__UUUCUCCA\n3'-CGC...GUCAC_______C___AU________CGGCG...AAG-5'\n_____________|_____________________|\n_____________35____________________13\n |
289 -- 295 |
14 -- 20 |
-18.1028 kcal/mol |
4.21038 kcal/mol |
3.33169 kcal/mol |
276 296@LB@ | |@LB@5'-CAA...CAAAU U CAUUC-3'@LB@ GCUUUGA GGU AAAGAGGU@LB@ :|||::| ||| ||||||||@LB@ UGAAGUU CCA UUUCUCCA@LB@3'-CGC...GUCAC C AU CGGCG...AAG-5'@LB@ | |@LB@ 35 13@LB@@LB@@LB@Energy -10.56 kcal/mol@LB@Hybridization Energy -18.1028 kcal/mol@LB@Unfolding Energy - mRNA 4.21038 kcal/mol@LB@Unfolding Energy - sRNA 3.33169 kcal/mol@LB@@LB@Position - mRNA 277 -- 295@LB@Position - sRNA 14 -- 34@LB@Position Seed - mRNA 289 -- 295@LB@Position Seed - sRNA 14 -- 20@LB@ |
143 |
0.02402 |
0.5467 |
b4029 |
yjbH |
-10.20 |
0.097639 |
107 -- 117 |
75 -- 85 |
DUF940 family extracellular polysaccharide protein |
|
_____________106_________118\n_____________|___________|\n5'-GCG...CAUUA___________CUCGC...AUU-3'\n______________UUUAUGUUGGC\n______________||:|:||||||\n______________AAGUGCAACCG\n3'-CGC...UUUUC___________AAAUC...AAG-5'\n_____________|___________|\n_____________86__________74\n |
111 -- 117 |
75 -- 81 |
-14.6823 kcal/mol |
3.97178 kcal/mol |
0.509769 kcal/mol |
106 118@LB@ | |@LB@5'-GCG...CAUUA CUCGC...AUU-3'@LB@ UUUAUGUUGGC@LB@ ||:|:||||||@LB@ AAGUGCAACCG@LB@3'-CGC...UUUUC AAAUC...AAG-5'@LB@ | |@LB@ 86 74@LB@@LB@@LB@Energy -10.20 kcal/mol@LB@Hybridization Energy -14.6823 kcal/mol@LB@Unfolding Energy - mRNA 3.97178 kcal/mol@LB@Unfolding Energy - sRNA 0.509769 kcal/mol@LB@@LB@Position - mRNA 107 -- 117@LB@Position - sRNA 75 -- 85@LB@Position Seed - mRNA 111 -- 117@LB@Position Seed - sRNA 75 -- 81@LB@ |
144 |
0.02429 |
0.5467 |
b3156 |
yhbS |
-10.71 |
0.079718 |
207 -- 222 |
50 -- 67 |
GNAT family putative N-acetyltransferase |
|
_____________206________________223\n_____________|__________________|\n5'-CCG...UGCUA__________________CCAUU...AUC-3'\n______________AUUCGAGU__AGAAAUUC\n______________||||||||__|||||:||\n______________UAAGCUCA__UCUUUGAG\n3'-CGC...AUCAA________AC________AGCUU...AAG-5'\n_____________|__________________|\n_____________68_________________49\n |
216 -- 222 |
50 -- 56 |
-17.6544 kcal/mol |
2.73618 kcal/mol |
4.21029 kcal/mol |
206 223@LB@ | |@LB@5'-CCG...UGCUA CCAUU...AUC-3'@LB@ AUUCGAGU AGAAAUUC@LB@ |||||||| |||||:||@LB@ UAAGCUCA UCUUUGAG@LB@3'-CGC...AUCAA AC AGCUU...AAG-5'@LB@ | |@LB@ 68 49@LB@@LB@@LB@Energy -10.71 kcal/mol@LB@Hybridization Energy -17.6544 kcal/mol@LB@Unfolding Energy - mRNA 2.73618 kcal/mol@LB@Unfolding Energy - sRNA 4.21029 kcal/mol@LB@@LB@Position - mRNA 207 -- 222@LB@Position - sRNA 50 -- 67@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 50 -- 56@LB@ |
145 |
0.02443 |
0.5467 |
b2569 |
lepA |
-12.53 |
0.038132 |
5 -- 17 |
71 -- 85 |
back-translocating elongation factor EF4 GTPase |
|
_____________4_______________18\n_____________|_______________|\n_______5'-UGAU_______________UUGCA...ACC-3'\n______________UUCAC__UGGCUUUG\n______________|||||__|||||||:\n______________AAGUG__ACCGAAAU\n3'-CGC...UUUUC_____CA________CAAUA...AAG-5'\n_____________|_______________|\n_____________86______________70\n |
11 -- 17 |
71 -- 77 |
-14.3569 kcal/mol |
1.27074 kcal/mol |
0.560731 kcal/mol |
4 18@LB@ | |@LB@ 5'-UGAU UUGCA...ACC-3'@LB@ UUCAC UGGCUUUG@LB@ ||||| |||||||:@LB@ AAGUG ACCGAAAU@LB@3'-CGC...UUUUC CA CAAUA...AAG-5'@LB@ | |@LB@ 86 70@LB@@LB@@LB@Energy -12.53 kcal/mol@LB@Hybridization Energy -14.3569 kcal/mol@LB@Unfolding Energy - mRNA 1.27074 kcal/mol@LB@Unfolding Energy - sRNA 0.560731 kcal/mol@LB@@LB@Position - mRNA 5 -- 17@LB@Position - sRNA 71 -- 85@LB@Position Seed - mRNA 11 -- 17@LB@Position Seed - sRNA 71 -- 77@LB@ |
146 |
0.0246 |
0.5467 |
b2813 |
mltA |
-8.67 |
0.177423 |
203 -- 222 |
69 -- 90 |
membrane-bound lytic murein transglycosylase A |
|
_____________202____________________223\n_____________|______________________|\n5'-UGC...ACAAU_____G_________G_AA___ACCUU...AAG-3'\n______________GAAAG___ACGUUGG_U__AGU\n______________:||||___|||||||_|__|||\n______________UUUUC___UGCAACC_A__UCA\n3'-CGC...AGGCG_____AAG_______G_AA___AUAAG...AAG-5'\n_____________|______________________|\n_____________91_____________________68\n |
209 -- 215 |
76 -- 82 |
-14.1188 kcal/mol |
4.87564 kcal/mol |
0.572281 kcal/mol |
202 223@LB@ | |@LB@5'-UGC...ACAAU G G AA ACCUU...AAG-3'@LB@ GAAAG ACGUUGG U AGU@LB@ :|||| ||||||| | |||@LB@ UUUUC UGCAACC A UCA@LB@3'-CGC...AGGCG AAG G AA AUAAG...AAG-5'@LB@ | |@LB@ 91 68@LB@@LB@@LB@Energy -8.67 kcal/mol@LB@Hybridization Energy -14.1188 kcal/mol@LB@Unfolding Energy - mRNA 4.87564 kcal/mol@LB@Unfolding Energy - sRNA 0.572281 kcal/mol@LB@@LB@Position - mRNA 203 -- 222@LB@Position - sRNA 69 -- 90@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 76 -- 82@LB@ |
147 |
0.02477 |
0.5467 |
b3259 |
prmA |
-10.37 |
0.091190 |
111 -- 125 |
72 -- 88 |
methyltransferase for 50S ribosomal subunit protein L11 |
|
_____________110_______________126\n_____________|_________________|\n5'-GCC...CUACU_________________CCUGG...AGG-3'\n______________AAGUUUGC__UGGCUUU\n______________|||||::|__|||||||\n______________UUCAAGUG__ACCGAAA\n3'-CGC...GCGUU________CA_______UCAAU...AAG-5'\n_____________|_________________|\n_____________89________________71\n |
119 -- 125 |
72 -- 78 |
-14.8408 kcal/mol |
3.95141 kcal/mol |
0.517175 kcal/mol |
110 126@LB@ | |@LB@5'-GCC...CUACU CCUGG...AGG-3'@LB@ AAGUUUGC UGGCUUU@LB@ |||||::| |||||||@LB@ UUCAAGUG ACCGAAA@LB@3'-CGC...GCGUU CA UCAAU...AAG-5'@LB@ | |@LB@ 89 71@LB@@LB@@LB@Energy -10.37 kcal/mol@LB@Hybridization Energy -14.8408 kcal/mol@LB@Unfolding Energy - mRNA 3.95141 kcal/mol@LB@Unfolding Energy - sRNA 0.517175 kcal/mol@LB@@LB@Position - mRNA 111 -- 125@LB@Position - sRNA 72 -- 88@LB@Position Seed - mRNA 119 -- 125@LB@Position Seed - sRNA 72 -- 78@LB@ |
148 |
0.0249 |
0.5467 |
b2131 |
osmF |
-10.26 |
0.095288 |
236 -- 244 |
75 -- 83 |
putative ABC transporter periplasmic binding protein |
|
_____________235_______245\n_____________|_________|\n5'-AGG...CUGGU_________AGCCG...UCG-3'\n______________UAUGUUGGC\n______________:|:||||||\n______________GUGCAACCG\n3'-CGC...UUCAA_________AAAUC...AAG-5'\n_____________|_________|\n_____________84________74\n |
238 -- 244 |
75 -- 81 |
-12.6611 kcal/mol |
1.90691 kcal/mol |
0.492259 kcal/mol |
235 245@LB@ | |@LB@5'-AGG...CUGGU AGCCG...UCG-3'@LB@ UAUGUUGGC@LB@ :|:||||||@LB@ GUGCAACCG@LB@3'-CGC...UUCAA AAAUC...AAG-5'@LB@ | |@LB@ 84 74@LB@@LB@@LB@Energy -10.26 kcal/mol@LB@Hybridization Energy -12.6611 kcal/mol@LB@Unfolding Energy - mRNA 1.90691 kcal/mol@LB@Unfolding Energy - sRNA 0.492259 kcal/mol@LB@@LB@Position - mRNA 236 -- 244@LB@Position - sRNA 75 -- 83@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 75 -- 81@LB@ |
149 |
0.0249 |
0.5467 |
b0737 |
tolQ |
-11.44 |
0.059241 |
123 -- 143 |
57 -- 77 |
membrane spanning protein in TolA-TolQ-TolR complex |
|
_____________122___________________144\n_____________|_____________________|\n5'-GCA...GCAGA____C__________C_____CCCAC...CCA-3'\n______________GGUU_UGGUUGUUUG_GUUGA\n______________||:|_|:|||:||:|_|||||\n______________CCGA_AUCAAUAAGC_CAACU\n3'-CGC...UGCAA____A__________U_____CUUUG...AAG-5'\n_____________|_____________________|\n_____________78____________________56\n |
130 -- 136 |
64 -- 70 |
-20.7122 kcal/mol |
8.05008 kcal/mol |
1.21841 kcal/mol |
122 144@LB@ | |@LB@5'-GCA...GCAGA C C CCCAC...CCA-3'@LB@ GGUU UGGUUGUUUG GUUGA@LB@ ||:| |:|||:||:| |||||@LB@ CCGA AUCAAUAAGC CAACU@LB@3'-CGC...UGCAA A U CUUUG...AAG-5'@LB@ | |@LB@ 78 56@LB@@LB@@LB@Energy -11.44 kcal/mol@LB@Hybridization Energy -20.7122 kcal/mol@LB@Unfolding Energy - mRNA 8.05008 kcal/mol@LB@Unfolding Energy - sRNA 1.21841 kcal/mol@LB@@LB@Position - mRNA 123 -- 143@LB@Position - sRNA 57 -- 77@LB@Position Seed - mRNA 130 -- 136@LB@Position Seed - sRNA 64 -- 70@LB@ |
150 |
0.02548 |
0.5485 |
b0180 |
fabZ |
-10.02 |
0.104939 |
240 -- 263 |
1 -- 24 |
(3R)-hydroxymyristol acyl carrier protein dehydratase |
|
_____________239______________________264\n_____________|________________________|\n5'-AAA...AGAUU______CUUC______A_______CCGUU...AAG-3'\n______________UUAGAA____UGCCGC_CCGUUUC\n______________|||:||____||||||_|||||||\n______________AAUUUU____ACGGCG_GGCAAAG\n3'-CGC...UUCCC______CUCC______A_______-5'\n_____________|_______________________|\n_____________25______________________1\n |
257 -- 263 |
1 -- 7 |
-23.7452 kcal/mol |
3.39044 kcal/mol |
10.3355 kcal/mol |
239 264@LB@ | |@LB@5'-AAA...AGAUU CUUC A CCGUU...AAG-3'@LB@ UUAGAA UGCCGC CCGUUUC@LB@ |||:|| |||||| |||||||@LB@ AAUUUU ACGGCG GGCAAAG@LB@3'-CGC...UUCCC CUCC A -5'@LB@ | |@LB@ 25 1@LB@@LB@@LB@Energy -10.02 kcal/mol@LB@Hybridization Energy -23.7452 kcal/mol@LB@Unfolding Energy - mRNA 3.39044 kcal/mol@LB@Unfolding Energy - sRNA 10.3355 kcal/mol@LB@@LB@Position - mRNA 240 -- 263@LB@Position - sRNA 1 -- 24@LB@Position Seed - mRNA 257 -- 263@LB@Position Seed - sRNA 1 -- 7@LB@ |