Freiburg RNA Tools
CopraRNA - Results
BIF
IFF
CopraRNA 1536703

Input and runtime details for job 1536703 (precomputed example)

Input Parameters

? sRNA sequences[.fa]
? Putative target sequences (organism of interest)[.fa]
? Extract sequences aroundstart codon
? nt up (1-300)200
? nt down (1-300)100
? Minimal rel. cluster size0.5
? Iterative organism subset analysis (beta)no

Job ID 1536703 (server version trunk)

?Job Submitted & Queued@ Mon Oct 27 19:30:50 CET 2014
?Processing Started@ Mon Oct 27 19:30:51 CET 2014
?CopraRNA Finished & Post-Processing@ Mon Oct 27 23:50:41 CET 2014
?Post-Processing Finished@ Mon Oct 27 23:50:41 CET 2014
?Job Completed@ Mon Oct 27 23:50:58 CET 2014
 DIRECT ACCESS: http://rna.informatik.uni-freiburg.de:80/RetrieveResults.jsp?jobID=1536703&toolName=CopraRNA ( 30 days expiry )

The job description you specified

FnrS

Output download complete results [zip]

Downloadable files

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[txt] [svg]


heatmap

? Conserved, identified interactions for NC_000913 Escherichia coli str. K-12 substr. MG1655

Sort by selecting a column name:
Rank CopraRNA p-value CopraRNA fdr value Locus Tag Gene Name Energy [kcal/mol] IntaRNA p-value Position mRNA Position sRNA Annotation Additional homologs sampled p-values
1 2.011e-08 7.337e-05 b0889 lrp -14.44 0.004905 164 -- 197 41 -- 71 leucine-responsive global transcriptional regulator   0
2 3.056e-05 0.04995 b0081 mraZ -12.69 0.018310 154 -- 181 37 -- 63 RsmH methytransferase inhibitor   0
3 4.107e-05 0.04995 b3306 rpsH -13.95 0.007187 187 -- 206 35 -- 55 30S ribosomal subunit protein S8   0
4 7.845e-05 0.07154 b1189 dadA -13.60 0.009360 185 -- 224 50 -- 92 D-amino acid dehydrogenase   0
5 0.0001154 0.08422 b3365 nirB -16.30 0.001019 157 -- 206 35 -- 87 nitrite reductase large subunit NAD(P)H-binding   0
6 0.0001798 0.09793 b0884 infA -13.86 0.007726 14 -- 29 19 -- 34 translation initiation factor IF-1   0
7 0.0002148 0.09793 b2552 hmp -13.02 0.014418 167 -- 224 20 -- 90 fused nitric oxide dioxygenase/dihydropteridine reductase 2   0
8 0.000244 0.09888 b1107 nagZ -10.13 0.099477 185 -- 204 38 -- 62 beta N-acetyl-glucosaminidase   0
9 0.0004044 0.1475 b4015 aceA -12.90 0.015723 72 -- 114 4 -- 39 isocitrate lyase   0
10 0.0005002 0.1659 b1654 grxD -14.29 0.005501 187 -- 206 35 -- 57 glutaredoxin-4   0

Details of Selected Interaction Download Interaction Details

mRNA

sRNA

		

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Results are computed with CopraRNA version 2.0.1