| 91 |
0.002503 |
0.09689 |
b1062 |
pyrC |
-7.37 |
0.386343 |
231 -- 263 |
1 -- 35 |
dihydro-orotase |
|
_____________230_______________________________________264\n_____________|_________________________________________|\n5'-GCG...AGAUC_____________________ACUG___CC_______CC__GAUGG...CCA-3'\n______________CGC__CGCCCA______GACG____GCA__UUCACCU__GC\n______________|||__||||||______||||____|||__|||||||__||\n______________GCG__GCGGGU______CUGC____CGU__AAGUGGA__CG\n3'-UUU...ACCUC___UU______AGCGAA____AA__________________-5'\n_____________|________________________________________|\n_____________36_______________________________________1\n |
253 -- 259 |
3 -- 9 |
-30.041 kcal/mol |
7.38685 kcal/mol |
15.286 kcal/mol |
230 264@LB@ | |@LB@5'-GCG...AGAUC ACUG CC CC GAUGG...CCA-3'@LB@ CGC CGCCCA GACG GCA UUCACCU GC@LB@ ||| |||||| |||| ||| ||||||| ||@LB@ GCG GCGGGU CUGC CGU AAGUGGA CG@LB@3'-UUU...ACCUC UU AGCGAA AA -5'@LB@ | |@LB@ 36 1@LB@@LB@@LB@Energy -7.37 kcal/mol@LB@Hybridization Energy -30.041 kcal/mol@LB@Unfolding Energy - mRNA 7.38685 kcal/mol@LB@Unfolding Energy - sRNA 15.286 kcal/mol@LB@@LB@Position - mRNA 231 -- 263@LB@Position - sRNA 1 -- 35@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 92 |
0.002723 |
0.1042 |
b1413 |
hrpA |
-14.20 |
0.008055 |
24 -- 69 |
1 -- 41 |
putative ATP-dependent helicase |
|
_____________23_______________________________________________70\n_____________|________________________________________________|\n5'-GGU...UUUGA________AU____________UGU____ACUU______CAAU_____CACAG...GCG-3'\n______________AUGG_GCG__GC_CCCGUUGCU___UGAC____UAUUCA____CCUGC\n______________||||_|||__:|_|||:|:|||___||||____:|||||____|||||\n______________UACC_CGC__UG_GGGUAGCGA___ACUG____GUAAGU____GGACG\n3'-UUU...UGUUA____U___GU__C________________CAAC_______________-5'\n_____________|_______________________________________________|\n_____________42______________________________________________1\n |
37 -- 43 |
20 -- 26 |
-41.3168 kcal/mol |
11.8333 kcal/mol |
15.2922 kcal/mol |
23 70@LB@ | |@LB@5'-GGU...UUUGA AU UGU ACUU CAAU CACAG...GCG-3'@LB@ AUGG GCG GC CCCGUUGCU UGAC UAUUCA CCUGC@LB@ |||| ||| :| |||:|:||| |||| :||||| |||||@LB@ UACC CGC UG GGGUAGCGA ACUG GUAAGU GGACG@LB@3'-UUU...UGUUA U GU C CAAC -5'@LB@ | |@LB@ 42 1@LB@@LB@@LB@Energy -14.20 kcal/mol@LB@Hybridization Energy -41.3168 kcal/mol@LB@Unfolding Energy - mRNA 11.8333 kcal/mol@LB@Unfolding Energy - sRNA 15.2922 kcal/mol@LB@@LB@Position - mRNA 24 -- 69@LB@Position - sRNA 1 -- 41@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 20 -- 26@LB@ |
| 93 |
0.002751 |
0.1042 |
b3407 |
yhgF |
-15.01 |
0.004479 |
248 -- 282 |
1 -- 31 |
putative transcriptional accessory protein |
|
_____________247_________________________________283\n_____________|___________________________________|\n5'-CCC...CAGGC_______GAACA_G______C__C___________UUGAC...CCG-3'\n______________GCGCCCG_____G_UUGACG_UG_CGUUCGCCUGC\n______________:|||||:_____|_||||||_||_|:|||:|||||\n______________UGCGGGU_____C_AACUGC_AC_GUAAGUGGACG\n3'-UUU...CGCGU_______AG____G______A______________-5'\n_____________|__________________________________|\n_____________32_________________________________1\n |
276 -- 282 |
1 -- 7 |
-43.3047 kcal/mol |
13.2535 kcal/mol |
15.0438 kcal/mol |
247 283@LB@ | |@LB@5'-CCC...CAGGC GAACA G C C UUGAC...CCG-3'@LB@ GCGCCCG G UUGACG UG CGUUCGCCUGC@LB@ :|||||: | |||||| || |:|||:|||||@LB@ UGCGGGU C AACUGC AC GUAAGUGGACG@LB@3'-UUU...CGCGU AG G A -5'@LB@ | |@LB@ 32 1@LB@@LB@@LB@Energy -15.01 kcal/mol@LB@Hybridization Energy -43.3047 kcal/mol@LB@Unfolding Energy - mRNA 13.2535 kcal/mol@LB@Unfolding Energy - sRNA 15.0438 kcal/mol@LB@@LB@Position - mRNA 248 -- 282@LB@Position - sRNA 1 -- 31@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 94 |
0.002802 |
0.105 |
b2905 |
gcvT |
-11.27 |
0.053451 |
219 -- 244 |
68 -- 93 |
aminomethyltransferase tetrahydrofolate-dependent subunit (T protein) of glycine cleavage complex |
|
_____________218_________________________245\n_____________|___________________________|\n5'-CUG...CUCCU_____________CACAC___U_____CGCUC...AAA-3'\n______________UUGUACGAA_CAA_____GCU_UGCGG\n______________|:|||||||_|||_____|||_|||:|\n______________AGCAUGCUU_GUU_____CGA_ACGUC\n3'-UUU...GCCGC_________A___AACA____U_____AUUAA...ACG-5'\n_____________|___________________________|\n_____________94__________________________67\n |
221 -- 227 |
85 -- 91 |
-21.376 kcal/mol |
5.42013 kcal/mol |
4.68758 kcal/mol |
218 245@LB@ | |@LB@5'-CUG...CUCCU CACAC U CGCUC...AAA-3'@LB@ UUGUACGAA CAA GCU UGCGG@LB@ |:||||||| ||| ||| |||:|@LB@ AGCAUGCUU GUU CGA ACGUC@LB@3'-UUU...GCCGC A AACA U AUUAA...ACG-5'@LB@ | |@LB@ 94 67@LB@@LB@@LB@Energy -11.27 kcal/mol@LB@Hybridization Energy -21.376 kcal/mol@LB@Unfolding Energy - mRNA 5.42013 kcal/mol@LB@Unfolding Energy - sRNA 4.68758 kcal/mol@LB@@LB@Position - mRNA 219 -- 244@LB@Position - sRNA 68 -- 93@LB@Position Seed - mRNA 221 -- 227@LB@Position Seed - sRNA 85 -- 91@LB@ |
| 95 |
0.002866 |
0.1063 |
b1338 |
abgA |
-10.09 |
0.104797 |
206 -- 225 |
73 -- 94 |
p-aminobenzoyl-glutamate hydrolase A subunit |
|
_____________205____________________226\n_____________|______________________|\n5'-GAU...AUGGA___UU_________________AUUCG...UCC-3'\n______________GUC___UGAAUCAAUU_UGUUA\n______________|||___:|||||||||_||:||\n______________CAG___GCUUAGUUAA_ACGAU\n3'-UUU...AGCCG___CAU__________C_____ACGUC...ACG-5'\n_____________|______________________|\n_____________95_____________________72\n |
214 -- 220 |
79 -- 85 |
-14.4971 kcal/mol |
2.01447 kcal/mol |
2.39569 kcal/mol |
205 226@LB@ | |@LB@5'-GAU...AUGGA UU AUUCG...UCC-3'@LB@ GUC UGAAUCAAUU UGUUA@LB@ ||| :||||||||| ||:||@LB@ CAG GCUUAGUUAA ACGAU@LB@3'-UUU...AGCCG CAU C ACGUC...ACG-5'@LB@ | |@LB@ 95 72@LB@@LB@@LB@Energy -10.09 kcal/mol@LB@Hybridization Energy -14.4971 kcal/mol@LB@Unfolding Energy - mRNA 2.01447 kcal/mol@LB@Unfolding Energy - sRNA 2.39569 kcal/mol@LB@@LB@Position - mRNA 206 -- 225@LB@Position - sRNA 73 -- 94@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 79 -- 85@LB@ |
| 96 |
0.002937 |
0.1078 |
b1539 |
ydfG |
-11.63 |
0.043083 |
159 -- 205 |
42 -- 78 |
NADP-dependent 3-hydroxy acid dehydrogenase; malonic semialdehyde reductase |
|
_____________158_____________________________________________206\n_____________|_______________________________________________|\n5'-GAU...AUCCC_________UAUUGACACA_____GCGUU_____AC___________CGUUU...GCC-3'\n______________GUGCUAUGU__________CAAAA_____GAGGA__AGUGAGAUGAU\n______________||||||||:__________|||||_____:||||__|||:|||::||\n______________CACGAUACG__________GUUUU_____UUCCU__UCAUUCUGUUA\n3'-UUU...GUUAA_________UCAUUAA_______________________________UACCU...ACG-5'\n_____________|_______________________________________________|\n_____________79______________________________________________41\n |
199 -- 205 |
42 -- 48 |
-28.6775 kcal/mol |
11.4217 kcal/mol |
5.62659 kcal/mol |
158 206@LB@ | |@LB@5'-GAU...AUCCC UAUUGACACA GCGUU AC CGUUU...GCC-3'@LB@ GUGCUAUGU CAAAA GAGGA AGUGAGAUGAU@LB@ ||||||||: ||||| :|||| |||:|||::||@LB@ CACGAUACG GUUUU UUCCU UCAUUCUGUUA@LB@3'-UUU...GUUAA UCAUUAA UACCU...ACG-5'@LB@ | |@LB@ 79 41@LB@@LB@@LB@Energy -11.63 kcal/mol@LB@Hybridization Energy -28.6775 kcal/mol@LB@Unfolding Energy - mRNA 11.4217 kcal/mol@LB@Unfolding Energy - sRNA 5.62659 kcal/mol@LB@@LB@Position - mRNA 159 -- 205@LB@Position - sRNA 42 -- 78@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 97 |
0.002994 |
0.1087 |
b1452 |
yncE |
-13.85 |
0.010262 |
151 -- 196 |
50 -- 89 |
ATP-binding protein periplasmic function unknown |
|
_____________150_______________________________________________197\n_____________|_________________________________________________|\n5'-AUG...GCUUA_____GC_______AA______CAAAAAUAUC______UC_________CGUCA...AAA-3'\n______________GCGAA___AUUGUG____GCAG__________GGUUCA__AAAGGGAGU\n______________:||||___||||||____||||__________::||||__|||||:|||\n______________UGCUU___UAACAC____CGUC__________UUAAGU__UUUCCUUCA\n3'-UUU...CAGCA_____AGU______GAUA____A_______________UU_________UUCUG...ACG-5'\n_____________|_________________________________________________|\n_____________90________________________________________________49\n |
190 -- 196 |
50 -- 56 |
-28.7036 kcal/mol |
10.1778 kcal/mol |
4.68197 kcal/mol |
150 197@LB@ | |@LB@5'-AUG...GCUUA GC AA CAAAAAUAUC UC CGUCA...AAA-3'@LB@ GCGAA AUUGUG GCAG GGUUCA AAAGGGAGU@LB@ :|||| |||||| |||| ::|||| |||||:|||@LB@ UGCUU UAACAC CGUC UUAAGU UUUCCUUCA@LB@3'-UUU...CAGCA AGU GAUA A UU UUCUG...ACG-5'@LB@ | |@LB@ 90 49@LB@@LB@@LB@Energy -13.85 kcal/mol@LB@Hybridization Energy -28.7036 kcal/mol@LB@Unfolding Energy - mRNA 10.1778 kcal/mol@LB@Unfolding Energy - sRNA 4.68197 kcal/mol@LB@@LB@Position - mRNA 151 -- 196@LB@Position - sRNA 50 -- 89@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 98 |
0.003129 |
0.1114 |
b0357 |
frmR |
-9.19 |
0.168108 |
184 -- 207 |
25 -- 48 |
regulator protein that represses frmRAB operon |
|
_____________183______________________208\n_____________|________________________|\n5'-CUG...CAUGC________A__U___AA_______GUACU...CCG-3'\n______________AGAUGAUG_GG_GCG__AUGCCCA\n______________|||::||:_||_|||__|:|||||\n______________UCUGUUAU_CC_CGC__UGCGGGU\n3'-UUU...UUCAU________A__U___GU_______AGCGA...ACG-5'\n_____________|________________________|\n_____________49_______________________24\n |
201 -- 207 |
25 -- 31 |
-27.7971 kcal/mol |
6.33291 kcal/mol |
12.271 kcal/mol |
183 208@LB@ | |@LB@5'-CUG...CAUGC A U AA GUACU...CCG-3'@LB@ AGAUGAUG GG GCG AUGCCCA@LB@ |||::||: || ||| |:|||||@LB@ UCUGUUAU CC CGC UGCGGGU@LB@3'-UUU...UUCAU A U GU AGCGA...ACG-5'@LB@ | |@LB@ 49 24@LB@@LB@@LB@Energy -9.19 kcal/mol@LB@Hybridization Energy -27.7971 kcal/mol@LB@Unfolding Energy - mRNA 6.33291 kcal/mol@LB@Unfolding Energy - sRNA 12.271 kcal/mol@LB@@LB@Position - mRNA 184 -- 207@LB@Position - sRNA 25 -- 48@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 99 |
0.003254 |
0.1114 |
b2839 |
lysR |
-9.43 |
0.148712 |
276 -- 282 |
1 -- 7 |
transcriptional activator of lysA; autorepressor |
|
_____________275_____283\n_____________|_______|\n5'-GGC...CGGCA_______UACAC...CAA-3'\n______________CACCUGC\n______________|||||||\n______________GUGGACG\n3'-UUU...CGUAA_______-5'\n_____________|______|\n_____________8______1\n |
276 -- 282 |
1 -- 7 |
-13.2779 kcal/mol |
1.51062 kcal/mol |
2.34039 kcal/mol |
275 283@LB@ | |@LB@5'-GGC...CGGCA UACAC...CAA-3'@LB@ CACCUGC@LB@ |||||||@LB@ GUGGACG@LB@3'-UUU...CGUAA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -9.43 kcal/mol@LB@Hybridization Energy -13.2779 kcal/mol@LB@Unfolding Energy - mRNA 1.51062 kcal/mol@LB@Unfolding Energy - sRNA 2.34039 kcal/mol@LB@@LB@Position - mRNA 276 -- 282@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 100 |
0.003303 |
0.1114 |
b1126 |
potA |
-10.42 |
0.087379 |
73 -- 89 |
61 -- 76 |
spermidine/putrescine ABC transporter ATPase |
|
_____________72________________90\n_____________|_________________|\n5'-CAA...AUAAA____A_C__________CAACA...UUC-3'\n______________GCUA_G_CAGUAAUUCA\n______________||||_|_||||||||||\n______________CGAU_C_GUCAUUAAGU\n3'-UUU...UAACA____A____________UUUUU...ACG-5'\n_____________|_________________|\n_____________77________________60\n |
83 -- 89 |
61 -- 67 |
-17.6149 kcal/mol |
3.71554 kcal/mol |
3.47887 kcal/mol |
72 90@LB@ | |@LB@5'-CAA...AUAAA A C CAACA...UUC-3'@LB@ GCUA G CAGUAAUUCA@LB@ |||| | ||||||||||@LB@ CGAU C GUCAUUAAGU@LB@3'-UUU...UAACA A UUUUU...ACG-5'@LB@ | |@LB@ 77 60@LB@@LB@@LB@Energy -10.42 kcal/mol@LB@Hybridization Energy -17.6149 kcal/mol@LB@Unfolding Energy - mRNA 3.71554 kcal/mol@LB@Unfolding Energy - sRNA 3.47887 kcal/mol@LB@@LB@Position - mRNA 73 -- 89@LB@Position - sRNA 61 -- 76@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 61 -- 67@LB@ |
