| 21 |
6.29e-05 |
0.01049 |
b4040 |
ubiA |
-12.44 |
0.026053 |
187 -- 207 |
35 -- 59 |
p-hydroxybenzoate octaprenyltransferase |
|
_____________186_______________________208\n_____________|_________________________|\n5'-AGC...GUACU________AAA______________GGAGU...UAU-3'\n______________AAGAGGAA_______AAUAUGGAGU\n______________||:|||||_______|||||||||:\n______________UUUUCCUU_______UUAUACCUCG\n3'-UUU...AAGUU________CAUUCUG__________CGUUG...ACG-5'\n_____________|_________________________|\n_____________60________________________34\n |
201 -- 207 |
35 -- 41 |
-18.3412 kcal/mol |
1.63668 kcal/mol |
4.22714 kcal/mol |
186 208@LB@ | |@LB@5'-AGC...GUACU AAA GGAGU...UAU-3'@LB@ AAGAGGAA AAUAUGGAGU@LB@ ||:||||| |||||||||:@LB@ UUUUCCUU UUAUACCUCG@LB@3'-UUU...AAGUU CAUUCUG CGUUG...ACG-5'@LB@ | |@LB@ 60 34@LB@@LB@@LB@Energy -12.44 kcal/mol@LB@Hybridization Energy -18.3412 kcal/mol@LB@Unfolding Energy - mRNA 1.63668 kcal/mol@LB@Unfolding Energy - sRNA 4.22714 kcal/mol@LB@@LB@Position - mRNA 187 -- 207@LB@Position - sRNA 35 -- 59@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 22 |
6.552e-05 |
0.01049 |
b3829 |
metE |
-13.68 |
0.011485 |
203 -- 246 |
1 -- 47 |
5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase |
|
_____________202_____________________________________________247\n_____________|_______________________________________________|\n5'-GAG...AAAAU________U__AUC____A_______G__UCCCUC_____G______GUCGC...GUG-3'\n______________GACAAUAU_GA_____AC_CCC_UCG_UU______GCGUU_GCCUGC\n______________||||||||_||_____||_|||_|||_||______||:||_:|||||\n______________CUGUUAUA_CU_____UG_GGG_AGC_AA______CGUAA_UGGACG\n3'-UUU...UCAUU________C__CGCGU__C___U___G__CUGCAA_____G______-5'\n_____________|______________________________________________|\n_____________48_____________________________________________1\n |
204 -- 210 |
40 -- 46 |
-38.0501 kcal/mol |
7.59426 kcal/mol |
16.7767 kcal/mol |
202 247@LB@ | |@LB@5'-GAG...AAAAU U AUC A G UCCCUC G GUCGC...GUG-3'@LB@ GACAAUAU GA AC CCC UCG UU GCGUU GCCUGC@LB@ |||||||| || || ||| ||| || ||:|| :|||||@LB@ CUGUUAUA CU UG GGG AGC AA CGUAA UGGACG@LB@3'-UUU...UCAUU C CGCGU C U G CUGCAA G -5'@LB@ | |@LB@ 48 1@LB@@LB@@LB@Energy -13.68 kcal/mol@LB@Hybridization Energy -38.0501 kcal/mol@LB@Unfolding Energy - mRNA 7.59426 kcal/mol@LB@Unfolding Energy - sRNA 16.7767 kcal/mol@LB@@LB@Position - mRNA 203 -- 246@LB@Position - sRNA 1 -- 47@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 23 |
8.752e-05 |
0.01341 |
b1476 |
fdnI |
-10.32 |
0.092280 |
170 -- 193 |
36 -- 57 |
formate dehydrogenase-N cytochrome B556 (gamma) subunit nitrate-inducible |
|
_____________169_______________________194\n_____________|_________________________|\n5'-CGU...CGAAU_________________ACGA____GAUCA...UUU-3'\n______________AAGGAAGU_GGACGAUG____GGAG\n______________||||||||_:|||:||:____||||\n______________UUCCUUCA_UCUGUUAU____CCUC\n3'-UUU...GUUUU________U________A_______GCGUU...ACG-5'\n_____________|_________________________|\n_____________58________________________35\n |
179 -- 185 |
41 -- 47 |
-22.1274 kcal/mol |
8.02585 kcal/mol |
3.74338 kcal/mol |
169 194@LB@ | |@LB@5'-CGU...CGAAU ACGA GAUCA...UUU-3'@LB@ AAGGAAGU GGACGAUG GGAG@LB@ |||||||| :|||:||: ||||@LB@ UUCCUUCA UCUGUUAU CCUC@LB@3'-UUU...GUUUU U A GCGUU...ACG-5'@LB@ | |@LB@ 58 35@LB@@LB@@LB@Energy -10.32 kcal/mol@LB@Hybridization Energy -22.1274 kcal/mol@LB@Unfolding Energy - mRNA 8.02585 kcal/mol@LB@Unfolding Energy - sRNA 3.74338 kcal/mol@LB@@LB@Position - mRNA 170 -- 193@LB@Position - sRNA 36 -- 57@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 24 |
0.0001125 |
0.01591 |
b3212 |
gltB |
-12.14 |
0.031409 |
27 -- 43 |
59 -- 75 |
glutamate synthase large subunit |
|
_____________26________________44\n_____________|_________________|\n5'-CUG...CAUAU_____________G___UCCCC...UAC-3'\n______________UUAUGCAGUAAUU_AGA\n______________:||||||||||||_|:|\n______________GAUACGUCAUUAA_UUU\n3'-UUU...AACAC_____________G___UUUCC...ACG-5'\n_____________|_________________|\n_____________76________________58\n |
33 -- 39 |
63 -- 69 |
-17.8824 kcal/mol |
2.24537 kcal/mol |
3.49177 kcal/mol |
26 44@LB@ | |@LB@5'-CUG...CAUAU G UCCCC...UAC-3'@LB@ UUAUGCAGUAAUU AGA@LB@ :|||||||||||| |:|@LB@ GAUACGUCAUUAA UUU@LB@3'-UUU...AACAC G UUUCC...ACG-5'@LB@ | |@LB@ 76 58@LB@@LB@@LB@Energy -12.14 kcal/mol@LB@Hybridization Energy -17.8824 kcal/mol@LB@Unfolding Energy - mRNA 2.24537 kcal/mol@LB@Unfolding Energy - sRNA 3.49177 kcal/mol@LB@@LB@Position - mRNA 27 -- 43@LB@Position - sRNA 59 -- 75@LB@Position Seed - mRNA 33 -- 39@LB@Position Seed - sRNA 63 -- 69@LB@ |
| 25 |
0.0001129 |
0.01591 |
b3304 |
rplR |
-13.93 |
0.009701 |
159 -- 205 |
37 -- 94 |
50S ribosomal subunit protein L18 |
|
_____________158___________________________________________________________206\n_____________|_____________________________________________________________|\n5'-AUC...ACGAA________UAC___AGAG______________________________GUA___C______UAAGA...GUC-3'\n______________GUCGUGCG___CAA____GCUA_____________AGAA_GAAGUAAG___ACA_UAUGGA\n______________|||||:||___|||____||||_____________|:||_||||||||___|||_||||||\n______________CAGCAUGC___GUU____CGAU_____________UUUU_CUUCAUUC___UGU_AUACCU\n3'-UUU...AGCCG________UUA___AACA____ACGUCAUUAAGUU____C______________U______CGCGU...ACG-5'\n_____________|_____________________________________________________________|\n_____________95____________________________________________________________36\n |
186 -- 192 |
47 -- 53 |
-32.9659 kcal/mol |
11.091 kcal/mol |
7.93697 kcal/mol |
158 206@LB@ | |@LB@5'-AUC...ACGAA UAC AGAG GUA C UAAGA...GUC-3'@LB@ GUCGUGCG CAA GCUA AGAA GAAGUAAG ACA UAUGGA@LB@ |||||:|| ||| |||| |:|| |||||||| ||| ||||||@LB@ CAGCAUGC GUU CGAU UUUU CUUCAUUC UGU AUACCU@LB@3'-UUU...AGCCG UUA AACA ACGUCAUUAAGUU C U CGCGU...ACG-5'@LB@ | |@LB@ 95 36@LB@@LB@@LB@Energy -13.93 kcal/mol@LB@Hybridization Energy -32.9659 kcal/mol@LB@Unfolding Energy - mRNA 11.091 kcal/mol@LB@Unfolding Energy - sRNA 7.93697 kcal/mol@LB@@LB@Position - mRNA 159 -- 205@LB@Position - sRNA 37 -- 94@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 26 |
0.000123 |
0.01616 |
b3280 |
yrdB |
-11.55 |
0.045184 |
198 -- 244 |
43 -- 92 |
DUF1488 family protein |
|
_____________197__________________________________________________245\n_____________|____________________________________________________|\n5'-CCA...UUGUC__CG______________C__C____UUC_____C_____AG__________GAAUA...GCG-3'\n______________CG__UGAAUCAG____GC_AU_CAGU____CGGA_AGGGA__AGUGGGACGA\n______________||__:||||||:____||_||_||||____|::|_|:|||__|||::|||:|\n______________GC__GCUUAGUU____CG_UA_GUCA____GUUU_UUCCU__UCAUUCUGUU\n3'-UUU...CCGCA__AU________AACA__A__C____UUAA____U_________________AUACC...ACG-5'\n_____________|____________________________________________________|\n_____________93___________________________________________________42\n |
238 -- 244 |
43 -- 49 |
-31.3697 kcal/mol |
13.9577 kcal/mol |
5.86211 kcal/mol |
197 245@LB@ | |@LB@5'-CCA...UUGUC CG C C UUC C AG GAAUA...GCG-3'@LB@ CG UGAAUCAG GC AU CAGU CGGA AGGGA AGUGGGACGA@LB@ || :||||||: || || |||| |::| |:||| |||::|||:|@LB@ GC GCUUAGUU CG UA GUCA GUUU UUCCU UCAUUCUGUU@LB@3'-UUU...CCGCA AU AACA A C UUAA U AUACC...ACG-5'@LB@ | |@LB@ 93 42@LB@@LB@@LB@Energy -11.55 kcal/mol@LB@Hybridization Energy -31.3697 kcal/mol@LB@Unfolding Energy - mRNA 13.9577 kcal/mol@LB@Unfolding Energy - sRNA 5.86211 kcal/mol@LB@@LB@Position - mRNA 198 -- 244@LB@Position - sRNA 43 -- 92@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 27 |
0.0001238 |
0.01616 |
b0081 |
mraZ |
-12.77 |
0.021128 |
157 -- 196 |
45 -- 91 |
RsmH methytransferase inhibitor |
|
_____________156_____________________________________________197\n_____________|_______________________________________________|\n5'-GAU...UUUCA___G____________GG_____A____GG___U_____________UGGCA...AAA-3'\n______________GUG_GA___AAUUGUG____GCA__AGU__GAA_AAGG_GGUGAGGC\n______________||:_||___|||||||____|||__|:|__:||_||||_:||:||:|\n______________CAU_CU___UUAACAC____CGU__UUA__UUU_UUCC_UCAUUCUG\n3'-UUU...CGCAG___G__UAG_______GAUA___CA___AG___U____U________UUAUA...ACG-5'\n_____________|_______________________________________________|\n_____________92______________________________________________44\n |
190 -- 196 |
45 -- 51 |
-27.6686 kcal/mol |
9.1766 kcal/mol |
5.72765 kcal/mol |
156 197@LB@ | |@LB@5'-GAU...UUUCA G GG A GG U UGGCA...AAA-3'@LB@ GUG GA AAUUGUG GCA AGU GAA AAGG GGUGAGGC@LB@ ||: || ||||||| ||| |:| :|| |||| :||:||:|@LB@ CAU CU UUAACAC CGU UUA UUU UUCC UCAUUCUG@LB@3'-UUU...CGCAG G UAG GAUA CA AG U U UUAUA...ACG-5'@LB@ | |@LB@ 92 44@LB@@LB@@LB@Energy -12.77 kcal/mol@LB@Hybridization Energy -27.6686 kcal/mol@LB@Unfolding Energy - mRNA 9.1766 kcal/mol@LB@Unfolding Energy - sRNA 5.72765 kcal/mol@LB@@LB@Position - mRNA 157 -- 196@LB@Position - sRNA 45 -- 91@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 28 |
0.0001471 |
0.01851 |
b0997 |
torA |
-9.78 |
0.123932 |
184 -- 203 |
41 -- 60 |
trimethylamine N-oxide (TMAO) reductase I catalytic subunit |
b3551 b1872 |
_____________183__________________204\n_____________|____________________|\n5'-UAC...GCGAU__________A__A______AACAA...CGC-3'\n______________AAGAAGGAAG_AA_AUAAUG\n______________||:|||||||_||_|:|||:\n______________UUUUUCCUUC_UU_UGUUAU\n3'-UUU...UAAGU__________A__C______ACCUC...ACG-5'\n_____________|____________________|\n_____________61___________________40\n |
187 -- 193 |
51 -- 57 |
-13.1224 kcal/mol |
1.37417 kcal/mol |
1.96633 kcal/mol |
183 204@LB@ | |@LB@5'-UAC...GCGAU A A AACAA...CGC-3'@LB@ AAGAAGGAAG AA AUAAUG@LB@ ||:||||||| || |:|||:@LB@ UUUUUCCUUC UU UGUUAU@LB@3'-UUU...UAAGU A C ACCUC...ACG-5'@LB@ | |@LB@ 61 40@LB@@LB@@LB@Energy -9.78 kcal/mol@LB@Hybridization Energy -13.1224 kcal/mol@LB@Unfolding Energy - mRNA 1.37417 kcal/mol@LB@Unfolding Energy - sRNA 1.96633 kcal/mol@LB@@LB@Position - mRNA 184 -- 203@LB@Position - sRNA 41 -- 60@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 29 |
0.0001601 |
0.01945 |
b3472 |
dcrB |
-12.60 |
0.023536 |
186 -- 203 |
41 -- 59 |
putative lipoprotein |
|
_____________185_________________204\n_____________|___________________|\n5'-UGG...UUAUC_____________U_____CGCAA...UCG-3'\n______________GAAAGGAAG_AAG_CAAUG\n______________:||||||||_|||_||||:\n______________UUUUCCUUC_UUC_GUUAU\n3'-UUU...AAGUU_________A___U_____ACCUC...ACG-5'\n_____________|___________________|\n_____________60__________________40\n |
188 -- 194 |
51 -- 57 |
-16.362 kcal/mol |
1.80431 kcal/mol |
1.95655 kcal/mol |
185 204@LB@ | |@LB@5'-UGG...UUAUC U CGCAA...UCG-3'@LB@ GAAAGGAAG AAG CAAUG@LB@ :|||||||| ||| ||||:@LB@ UUUUCCUUC UUC GUUAU@LB@3'-UUU...AAGUU A U ACCUC...ACG-5'@LB@ | |@LB@ 60 40@LB@@LB@@LB@Energy -12.60 kcal/mol@LB@Hybridization Energy -16.362 kcal/mol@LB@Unfolding Energy - mRNA 1.80431 kcal/mol@LB@Unfolding Energy - sRNA 1.95655 kcal/mol@LB@@LB@Position - mRNA 186 -- 203@LB@Position - sRNA 41 -- 59@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 30 |
0.0001707 |
0.01997 |
b1847 |
yebF |
-12.53 |
0.024655 |
175 -- 194 |
68 -- 88 |
extracellular Colicin M immunity family protein |
|
_____________174___________________195\n_____________|_____________________|\n5'-AAC...UCUCC__________________G__AAAAA...CAA-3'\n______________UGAAUC_AUUGUGCUAUG_AG\n______________:|||||_|||||||||||_||\n______________GCUUAG_UAACACGAUAC_UC\n3'-UUU...AGCAU______U___________G__AUUAA...ACG-5'\n_____________|_____________________|\n_____________89____________________67\n |
185 -- 191 |
71 -- 77 |
-25.1828 kcal/mol |
8.15856 kcal/mol |
4.50023 kcal/mol |
174 195@LB@ | |@LB@5'-AAC...UCUCC G AAAAA...CAA-3'@LB@ UGAAUC AUUGUGCUAUG AG@LB@ :||||| ||||||||||| ||@LB@ GCUUAG UAACACGAUAC UC@LB@3'-UUU...AGCAU U G AUUAA...ACG-5'@LB@ | |@LB@ 89 67@LB@@LB@@LB@Energy -12.53 kcal/mol@LB@Hybridization Energy -25.1828 kcal/mol@LB@Unfolding Energy - mRNA 8.15856 kcal/mol@LB@Unfolding Energy - sRNA 4.50023 kcal/mol@LB@@LB@Position - mRNA 175 -- 194@LB@Position - sRNA 68 -- 88@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 71 -- 77@LB@ |
