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CopraRNA 1654565

Input and runtime details for job 1654565 (precomputed example)

Sequence input

? sRNA sequences[.fa]
? Putative target sequences (organism of interest)[.fa]
? Extract sequences aroundstart codon
? nt up (1-300)200
? nt down (1-300)100

CopraRNA parameters

? Consensus prediction off
? p-value combinationno
? p-value filtering (0=off)0

IntaRNA parameters

? Target folding window size150
? Target max. basepair distance100

Job ID 1654565 (server version trunk)

?Job Submitted & Queued@ Fri Feb 16 15:23:36 CET 2018
?CopraRNA Started@ Fri Feb 16 15:24:05 CET 2018
?CopraRNA Finished & Post-Processing@ Fri Feb 16 22:25:53 CET 2018
?Post-Processing Finished@ Fri Feb 16 22:26:01 CET 2018
?Job Completed@ Fri Feb 16 22:26:34 CET 2018
 DIRECT ACCESS: http://rna.informatik.uni-freiburg.de/RetrieveResults.jsp?jobID=1654565&toolName=CopraRNA ( 30 days expiry )

Description of the job

FnrS

Output download complete results [zip]

Downloadable files

[csv]
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heatmap

? Conserved, identified interactions for NC_000913 Escherichia coli str. K-12 substr. MG1655

Sort by selecting a column name:
Rank CopraRNA p-value CopraRNA fdr value Locus Tag Gene Name Energy [kcal/mol] IntaRNA p-value Position mRNA Position sRNA Annotation Additional homologs
1 1.057e-08 3.724e-05 b0889 lrp -13.58 0.012310 166 -- 227 21 -- 70 leucine-responsive global transcriptional regulator  
2 4.208e-07 0.0007412 b2531 iscR -21.46 0.000012 188 -- 264 2 -- 56 isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor  
3 7.57e-07 0.0008889 b1763 topB -11.97 0.035059 233 -- 258 1 -- 37 DNA topoisomerase III  
4 1.28e-06 0.001128 b0884 infA -17.67 0.000535 178 -- 264 1 -- 71 translation initiation factor IF-1  
5 2.521e-06 0.001776 b3365 nirB -15.77 0.002536 156 -- 206 35 -- 88 nitrite reductase large subunit NAD(P)H-binding  
6 5.595e-06 0.003285 b2048 cpsG -15.91 0.002276 49 -- 82 20 -- 54 phosphomannomutase  
7 8.167e-06 0.003921 b1531 marA -12.70 0.022098 183 -- 204 40 -- 62 multiple antibiotic resistance transcriptional regulator  
8 8.903e-06 0.003921 b1654 grxD -12.06 0.033180 187 -- 203 41 -- 57 glutaredoxin-4  
9 1.504e-05 0.005627 b1189 dadA -11.44 0.048458 195 -- 226 48 -- 78 D-amino acid dehydrogenase  
10 1.762e-05 0.005627 b1112 bhsA -13.86 0.010205 165 -- 186 1 -- 22 biofilm cell surface and signaling protein b0806 b0802
11 1.858e-05 0.005627 b4015 aceA -14.28 0.007567 72 -- 114 4 -- 39 isocitrate lyase  
12 2.043e-05 0.005627 b3935 priA -14.36 0.007166 198 -- 229 1 -- 34 Primosome factor n' (replication factor Y)  
13 2.167e-05 0.005627 b0123 cueO -18.83 0.000188 100 -- 180 1 -- 93 multicopper oxidase (laccase)  
14 2.236e-05 0.005627 b3306 rpsH -12.22 0.029933 187 -- 206 35 -- 55 30S ribosomal subunit protein S8  
15 2.607e-05 0.006123 b2552 hmp -15.14 0.004063 170 -- 224 20 -- 85 fused nitric oxide dioxygenase/dihydropteridine reductase 2  
16 3.593e-05 0.007912 b2294 yfbU -10.97 0.063921 276 -- 297 1 -- 22 UPF0304 family protein  
17 4.003e-05 0.007917 b1066 rimJ -10.62 0.078044 194 -- 220 65 -- 91 ribosomal-protein-S5-alanine N-acetyltransferase  
18 4.045e-05 0.007917 b0723 sdhA -14.73 0.005501 172 -- 195 67 -- 90 succinate dehydrogenase flavoprotein subunit  
19 4.82e-05 0.008725 b2452 eutH -15.86 0.002353 187 -- 206 37 -- 56 ethanolamine transporter  
20 4.953e-05 0.008725 b1841 yobA -18.58 0.000237 158 -- 228 20 -- 76 CopC family protein  
21 6.29e-05 0.01049 b4040 ubiA -12.44 0.026053 187 -- 207 35 -- 59 p-hydroxybenzoate octaprenyltransferase  
22 6.552e-05 0.01049 b3829 metE -13.68 0.011485 203 -- 246 1 -- 47 5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase  
23 8.752e-05 0.01341 b1476 fdnI -10.32 0.092280 170 -- 193 36 -- 57 formate dehydrogenase-N cytochrome B556 (gamma) subunit nitrate-inducible  
24 0.0001125 0.01591 b3212 gltB -12.14 0.031409 27 -- 43 59 -- 75 glutamate synthase large subunit  
25 0.0001129 0.01591 b3304 rplR -13.93 0.009701 159 -- 205 37 -- 94 50S ribosomal subunit protein L18  
26 0.000123 0.01616 b3280 yrdB -11.55 0.045184 198 -- 244 43 -- 92 DUF1488 family protein  
27 0.0001238 0.01616 b0081 mraZ -12.77 0.021128 157 -- 196 45 -- 91 RsmH methytransferase inhibitor  
28 0.0001471 0.01851 b0997 torA -9.78 0.123932 184 -- 203 41 -- 60 trimethylamine N-oxide (TMAO) reductase I catalytic subunit b3551 b1872
29 0.0001601 0.01945 b3472 dcrB -12.60 0.023536 186 -- 203 41 -- 59 putative lipoprotein  
30 0.0001707 0.01997 b1847 yebF -12.53 0.024655 175 -- 194 68 -- 88 extracellular Colicin M immunity family protein  
31 0.0001757 0.01997 b4222 ytfP -8.86 0.198985 202 -- 224 67 -- 90 GGCT-like protein  
32 0.0001844 0.0203 b0006 yaaA -10.88 0.067423 215 -- 223 1 -- 9 peroxide resistance protein lowers intracellular iron  
33 0.0002072 0.02212 b2101 yegW -12.62 0.023301 188 -- 205 37 -- 56 putative DNA-binding transcriptional regulator  
34 0.0002646 0.02697 b1206 dauA -13.80 0.010599 120 -- 158 1 -- 34 C4-dicarboxylic acid transporter  
35 0.0002679 0.02697 b2152 yeiB -13.89 0.009991 187 -- 220 20 -- 59 DUF418 family putative inner membrane protein  
36 0.0002859 0.02798 b3927 glpF -13.42 0.013702 41 -- 78 5 -- 41 glycerol facilitator  
37 0.0003128 0.02889 b1107 nagZ -10.24 0.096497 189 -- 204 38 -- 57 beta N-acetyl-glucosaminidase  
38 0.0003163 0.02889 b4315 fimI -9.52 0.141947 182 -- 216 45 -- 80 fimbrial protein involved in type 1 pilus biosynthesis  
39 0.0003198 0.02889 b3960 argH -9.38 0.152930 179 -- 221 28 -- 64 argininosuccinate lyase  
40 0.000329 0.02897 b2513 yfgM -16.53 0.001389 180 -- 205 37 -- 63 ancillary SecYEG translocon subunit; putative anti-RcsB factor  
41 0.0003478 0.02948 b1478 adhP -14.79 0.005262 167 -- 196 51 -- 77 ethanol-active dehydrogenase/acetaldehyde-active reductase  
42 0.0003514 0.02948 b3847 pepQ -12.53 0.024661 145 -- 205 37 -- 89 proline dipeptidase  
43 0.0004177 0.03347 b3652 recG -10.52 0.082371 49 -- 71 17 -- 38 ATP-dependent DNA helicase  
44 0.0004181 0.03347 b3429 glgA -12.00 0.034422 173 -- 196 35 -- 55 glycogen synthase  
45 0.0004696 0.03623 b4035 malK -9.83 0.120497 188 -- 201 44 -- 57 maltose ABC transportor ATPase  
46 0.0004731 0.03623 b2279 nuoK -14.07 0.008802 136 -- 157 69 -- 92 NADH:ubiquinone oxidoreductase membrane subunit K  
47 0.0004845 0.03632 b0102 zapD -14.30 0.007459 100 -- 148 1 -- 47 FtsZ stabilizer  
48 0.0005049 0.03706 b2331 smrB -12.55 0.024312 152 -- 200 43 -- 92 putative DNA endonuclease  
49 0.0005476 0.03937 b2432 yfeY -8.84 0.200409 189 -- 199 48 -- 58 RpoE-regulated lipoprotein  
50 0.0005726 0.04013 b2215 ompC -10.22 0.097386 138 -- 180 44 -- 87 outer membrane porin protein C b0929 b0241 b1377
51 0.0005809 0.04013 b2507 guaA -13.60 0.012166 41 -- 74 55 -- 93 GMP synthetase (glutamine aminotransferase)  
52 0.0006076 0.04117 b1119 nagK -11.33 0.051615 175 -- 204 40 -- 71 N-acetyl-D-glucosamine kinase  
53 0.0006788 0.04512 b3949 frwC -10.17 0.100438 200 -- 218 68 -- 90 putative enzyme IIC component of PTS  
54 0.0007167 0.04676 b0147 ligT -15.11 0.004153 163 -- 244 1 -- 81 2'-5' RNA ligase  
55 0.0007336 0.04699 b0585 fes -14.13 0.008457 197 -- 228 46 -- 77 enterobactin/ferrienterobactin esterase  
56 0.0007477 0.04704 b2777 queE -11.99 0.034574 197 -- 232 45 -- 77 7-carboxy-7-deazaguanine synthase; queosine biosynthesis  
57 0.0009345 0.05776 b3755 yieP -11.62 0.043293 183 -- 203 41 -- 61 putative transcriptional regulator  
58 0.0009751 0.05816 b3809 dapF -9.70 0.129467 46 -- 52 1 -- 7 diaminopimelate epimerase  
59 0.0009764 0.05816 b0593 entC -14.06 0.008887 219 -- 262 19 -- 57 isochorismate synthase 1  
60 0.001013 0.05816 b2207 napD -8.99 0.186283 27 -- 46 75 -- 92 assembly protein for periplasmic nitrate reductase  
61 0.001027 0.05816 b0443 fadM -9.40 0.151451 193 -- 205 69 -- 81 long-chain acyl-CoA thioesterase III  
62 0.001027 0.05816 b0717 ybgP -6.75 0.488398 48 -- 57 53 -- 62 putative periplasmic pilin chaperone b3047
63 0.00104 0.05816 b1856 mepM -14.49 0.006560 139 -- 249 1 -- 88 murein DD-endopeptidase space-maker hydrolase septation protein  
64 0.001067 0.05874 b3340 fusA -13.60 0.012173 191 -- 223 21 -- 57 protein chain elongation factor EF-G GTP-binding  
65 0.001098 0.05953 b1479 maeA -10.62 0.077885 180 -- 205 37 -- 65 malate dehydrogenase decarboxylating NAD-requiring; malic enzyme  
66 0.001137 0.05992 b0076 leuO -9.90 0.116504 167 -- 195 35 -- 60 global transcription factor  
67 0.00114 0.05992 b4141 yjeH -12.53 0.024616 129 -- 146 73 -- 89 putative transporter  
68 0.001184 0.06134 b3188 sfsB -9.82 0.121108 186 -- 205 37 -- 57 malPQ operon transcriptional activator  
69 0.001222 0.06239 b0699 ybfA -13.19 0.016050 183 -- 205 37 -- 62 DUF2517 family protein  
70 0.001371 0.06901 b2989 yghU -9.78 0.124117 251 -- 269 4 -- 23 putative S-transferase  
71 0.001416 0.07026 b0880 cspD -7.58 0.355655 51 -- 57 1 -- 7 inhibitor of DNA replication cold shock protein homolog  
72 0.001523 0.07451 b2296 ackA -11.55 0.045253 141 -- 168 13 -- 36 acetate kinase A and propionate kinase 2  
73 0.001571 0.0758 b3746 ravA -8.41 0.246327 240 -- 262 54 -- 75 hexameric AAA+ MoxR family ATPase putative molecular chaperone  
74 0.001758 0.08273 b4012 yjaB -8.69 0.215298 234 -- 243 51 -- 60 GNAT-family putative N-acetyltransferase; acetyl coenzyme A-binding protein  
75 0.001837 0.08273 b1816 yoaE -14.98 0.004573 118 -- 155 1 -- 35 putative membrane protein/conserved protein  
76 0.001842 0.08273 b1717 rpmI -9.61 0.135308 218 -- 256 48 -- 92 50S ribosomal subunit protein L35  
77 0.00185 0.08273 b2325 yfcL -11.04 0.061434 190 -- 213 35 -- 57 uncharacterized protein  
78 0.001866 0.08273 b2952 yggT -14.70 0.005634 84 -- 104 37 -- 56 putative inner membrane protein; compensates for loss in K+ uptake  
79 0.001882 0.08273 b2219 atoS -12.26 0.029240 6 -- 44 51 -- 94 sensory histidine kinase in two-component regulatory system with AtoC  
80 0.001886 0.08273 b3205 yhbJ -9.88 0.117656 21 -- 27 1 -- 7 adaptor protein for GlmZ/GlmY sRNA decay glucosamine-6-phosphate-regulated; NTPase  
81 0.001932 0.08273 b2763 cysI -12.36 0.027367 234 -- 285 1 -- 58 sulfite reductase beta subunit NAD(P)-binding heme-binding  
82 0.001946 0.08273 b2661 gabD -10.13 0.102437 19 -- 25 1 -- 7 succinate-semialdehyde dehydrogenase I NADP-dependent  
83 0.001966 0.08273 b1584 speG -9.79 0.123144 169 -- 214 25 -- 77 spermidine N(1)-acetyltransferase  
84 0.001972 0.08273 b0968 yccX -8.34 0.253881 183 -- 226 2 -- 49 weak acylphosphatase  
85 0.002164 0.08969 b0910 cmk -11.54 0.045559 249 -- 300 1 -- 56 cytidylate kinase  
86 0.002341 0.09591 b0144 gluQ -7.21 0.411815 221 -- 264 26 -- 65 glutamyl-Q tRNA(Asp) synthetase  
87 0.002406 0.09689 b3317 rplB -11.53 0.045926 6 -- 24 68 -- 86 50S ribosomal subunit protein L2  
88 0.002437 0.09689 b0940 elfC -8.14 0.278491 92 -- 131 23 -- 58 putative outer membrane fimbrial subunit export usher protein b3144 b0532 b4317
89 0.002455 0.09689 b0466 ybaM -10.99 0.063193 248 -- 263 68 -- 82 DUF2496 family protein  
90 0.002477 0.09689 b4020 yjbB -17.01 0.000941 168 -- 222 1 -- 56 putative Na+/Pi-cotransporter  
91 0.002503 0.09689 b1062 pyrC -7.37 0.386343 231 -- 263 1 -- 35 dihydro-orotase  
92 0.002723 0.1042 b1413 hrpA -14.20 0.008055 24 -- 69 1 -- 41 putative ATP-dependent helicase  
93 0.002751 0.1042 b3407 yhgF -15.01 0.004479 248 -- 282 1 -- 31 putative transcriptional accessory protein  
94 0.002802 0.105 b2905 gcvT -11.27 0.053451 219 -- 244 68 -- 93 aminomethyltransferase tetrahydrofolate-dependent subunit (T protein) of glycine cleavage complex  
95 0.002866 0.1063 b1338 abgA -10.09 0.104797 206 -- 225 73 -- 94 p-aminobenzoyl-glutamate hydrolase A subunit  
96 0.002937 0.1078 b1539 ydfG -11.63 0.043083 159 -- 205 42 -- 78 NADP-dependent 3-hydroxy acid dehydrogenase; malonic semialdehyde reductase  
97 0.002994 0.1087 b1452 yncE -13.85 0.010262 151 -- 196 50 -- 89 ATP-binding protein periplasmic function unknown  
98 0.003129 0.1114 b0357 frmR -9.19 0.168108 184 -- 207 25 -- 48 regulator protein that represses frmRAB operon  
99 0.003254 0.1114 b2839 lysR -9.43 0.148712 276 -- 282 1 -- 7 transcriptional activator of lysA; autorepressor  
100 0.003303 0.1114 b1126 potA -10.42 0.087379 73 -- 89 61 -- 76 spermidine/putrescine ABC transporter ATPase  
101 0.003313 0.1114 b1193 emtA -10.98 0.063602 227 -- 257 55 -- 82 lytic murein endotransglycosylase E  
102 0.003332 0.1114 b1279 yciS -9.50 0.143375 3 -- 9 1 -- 7 DUF1049 family inner membrane protein function unknown  
103 0.003335 0.1114 b3494 uspB -9.88 0.117554 193 -- 207 43 -- 57 universal stress (ethanol tolerance) protein B  
104 0.00334 0.1114 b1923 fliC -7.97 0.300066 194 -- 205 75 -- 89 flagellar filament structural protein (flagellin)  
105 0.003386 0.1114 b0517 allD -12.14 0.031589 151 -- 204 43 -- 92 ureidoglycolate dehydrogenase b0801
106 0.003401 0.1114 b1848 yebG -10.18 0.099613 222 -- 299 16 -- 71 DNA damage-inducible protein regulated by LexA  
107 0.003422 0.1114 b0415 ribE -10.96 0.064092 190 -- 254 4 -- 58 riboflavin synthase beta chain  
108 0.003432 0.1114 b3159 yhbV -7.84 0.318675 148 -- 178 4 -- 39 U32 peptidase family protein  
109 0.003466 0.1114 b4485 ytfR -10.51 0.083206 29 -- 56 35 -- 61 putative sugar ABC transporter ATPase  
110 0.003505 0.1114 b4111 proP -11.30 0.052648 186 -- 222 48 -- 93 proline/glycine betaine transporter  
111 0.003511 0.1114 b0077 ilvI -11.05 0.061087 188 -- 206 36 -- 52 acetolactate synthase 3 large subunit  
112 0.003634 0.1131 b1473 yddG -8.08 0.286569 177 -- 226 24 -- 55 aromatic amino acid exporter  
113 0.00365 0.1131 b3154 yhbP -10.91 0.065979 249 -- 297 26 -- 85 UPF0306 family protein  
114 0.00366 0.1131 b0162 cdaR -8.46 0.240590 33 -- 47 64 -- 77 carbohydrate diacid regulon transcriptional regulator; autoregulator  
115 0.003699 0.1133 b3343 tusB -8.43 0.243717 216 -- 222 20 -- 26 mnm(5)-s(2)U34-tRNA synthesis 2-thiolation protein  
116 0.003923 0.1189 b4515 cydX -11.57 0.044828 15 -- 31 37 -- 53 cytochrome d (bd-I) ubiquinol oxidase subunit X  
117 0.00395 0.1189 b3447 ggt -7.92 0.307079 7 -- 34 69 -- 94 gamma-glutamyltranspeptidase  
118 0.004043 0.119 b1636 pdxY -15.07 0.004282 119 -- 169 46 -- 90 pyridoxamine kinase  
119 0.004048 0.119 b3607 cysE -9.06 0.179616 191 -- 204 40 -- 54 serine acetyltransferase  
120 0.004053 0.119 b2441 eutB -6.09 0.606518 293 -- 299 73 -- 79 ethanolamine ammonia-lyase large subunit heavy chain  
121 0.004137 0.1205 b0353 mhpT -11.58 0.044392 170 -- 179 1 -- 10 3-hydroxyphenylpropionic transporter  
122 0.004264 0.1231 b2914 rpiA -10.11 0.103884 190 -- 234 45 -- 89 ribose 5-phosphate isomerase constitutive  
123 0.004425 0.1258 b2535 csiE -7.63 0.347411 1 -- 40 5 -- 36 stationary phase inducible protein  
124 0.004441 0.1258 b1656 sodB -12.34 0.027802 164 -- 220 1 -- 93 superoxide dismutase Fe  
125 0.004538 0.1258 b0951 pqiB -12.90 0.019327 185 -- 205 37 -- 57 paraquat-inducible SoxRS-regulated MCE domain protein  
126 0.004539 0.1258 b0546 ybcM -11.00 0.062763 188 -- 220 45 -- 91 DLP12 prophage; putative DNA-binding transcriptional regulator b1499 b0564 b3515 b4116 b0566 b3516
127 0.004567 0.1258 b2320 pdxB -8.62 0.223386 291 -- 299 20 -- 28 erythronate-4-phosphate dehydrogenase  
128 0.004569 0.1258 b3033 yqiB -9.35 0.155553 90 -- 130 43 -- 87 DUF1249 protein YqiB  
129 0.00462 0.126 b1795 yeaQ -13.29 0.014930 139 -- 150 70 -- 81 UPF0410 family protein  
130 0.00465 0.126 b2916 argP -9.43 0.148863 238 -- 266 47 -- 73 transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor  
131 0.004841 0.1302 b3242 aaeX -9.57 0.138370 170 -- 176 1 -- 7 DUF1656 family putative inner membrane efflux pump associated protein  
132 0.004965 0.1313 b0876 ybjD -10.35 0.091015 20 -- 74 49 -- 93 putative OLD family ATP-dependent endonuclease; DUF2813 family protein  
133 0.004969 0.1313 b0148 hrpB -12.31 0.028366 190 -- 234 2 -- 40 putative ATP-dependent helicase  
134 0.004994 0.1313 b1518 lsrG -14.53 0.006358 14 -- 66 30 -- 79 autoinducer-2 (AI-2) degrading protein LsrG  
135 0.00505 0.1318 b0918 kdsB -10.75 0.072320 21 -- 54 1 -- 42 3-deoxy-manno-octulosonate cytidylyltransferase  
136 0.005087 0.1318 b3057 bacA -11.47 0.047548 153 -- 174 49 -- 71 undecaprenyl pyrophosphate phosphatase  
137 0.005185 0.1333 b2256 arnD -10.61 0.078275 62 -- 106 20 -- 56 undecaprenyl phosphate-alpha-L-ara4FN deformylase  
138 0.00525 0.1336 b0031 dapB -12.01 0.034078 16 -- 66 61 -- 114 dihydrodipicolinate reductase  
139 0.00529 0.1336 b3211 yhcC -9.14 0.172713 199 -- 227 39 -- 75 putative Fe-S oxidoreductase Radical SAM superfamily protein  
140 0.005308 0.1336 b0055 djlA -7.67 0.341620 49 -- 94 41 -- 89 membrane-anchored DnaK co-chaperone DNA-binding protein  
141 0.005411 0.1351 b3260 dusB -10.20 0.098848 236 -- 254 20 -- 38 tRNA-dihydrouridine synthase B  
142 0.005444 0.1351 b3950 frwB -10.99 0.063119 13 -- 50 47 -- 86 putative enzyme IIB component of PTS b3899
143 0.005544 0.1363 b2936 loiP -13.30 0.014839 83 -- 152 1 -- 41 Phe-Phe periplasmic metalloprotease OM lipoprotein; low salt-inducible; Era-binding heat shock protein  
144 0.005571 0.1363 b1843 yobB -15.05 0.004361 174 -- 196 50 -- 72 C-N hydrolase family protein  
145 0.00562 0.1365 b2532 trmJ -9.44 0.148020 215 -- 233 68 -- 84 tRNA mC32 mU32 2'-O-methyltransferase SAM-dependent  
146 0.005657 0.1365 b4322 uxuA -7.47 0.371307 180 -- 195 52 -- 75 mannonate hydrolase  
147 0.005701 0.1366 b1622 malY -7.52 0.364460 44 -- 91 35 -- 85 PLP-dependent beta-cystathionase and maltose regulon regulator  
148 0.005829 0.1368 b2962 yggX -8.12 0.280656 21 -- 35 68 -- 81 oxidative damage protective factor for iron-sulfur proteins  
149 0.005854 0.1368 b2166 psuK -12.08 0.032688 265 -- 298 54 -- 89 pseudouridine kinase  
150 0.005897 0.1368 b0887 cydD -10.72 0.073556 183 -- 190 1 -- 8 glutathione/cysteine ABC transporter export permease/ATPase  
151 0.005924 0.1368 b3248 yhdE -13.35 0.014399 2 -- 41 1 -- 42 dTTP/UTP pyrophosphatase; m(5)UTP/m(5)CTP/pseudo-UTP pyrophosphatase  
152 0.005935 0.1368 b2701 mltB -9.57 0.138424 83 -- 107 69 -- 92 membrane-bound lytic murein transglycosylase B  
153 0.00596 0.1368 b3892 fdoI -11.89 0.036676 181 -- 200 31 -- 53 formate dehydrogenase-O cytochrome b556 subunit  
154 0.005979 0.1368 b4136 dsbD -7.81 0.321864 41 -- 58 35 -- 56 thiol:disulfide interchange protein and activator of DsbC  
155 0.006038 0.137 b4374 yjjG -10.88 0.067155 203 -- 266 1 -- 54 dUMP phosphatase  
156 0.006066 0.137 b0005 yaaX -9.16 0.170742 96 -- 118 53 -- 73 DUF2502 family putative periplasmic protein b2390
157 0.006139 0.1377 b2347 yfdC -9.29 0.160067 171 -- 205 37 -- 76 putative inner membrane protein  
158 0.006224 0.1377 b3553 ghrB -7.62 0.349627 252 -- 258 1 -- 7 glyoxylate/hydroxypyruvate reductase B  
159 0.006259 0.1377 b2194 ccmH -11.29 0.052751 252 -- 296 43 -- 89 heme lyase CcmH subunit  
160 0.006309 0.1377 b2602 yfiL -11.97 0.035037 175 -- 199 46 -- 76 lipoprotein  
161 0.006314 0.1377 b4099 phnI -7.36 0.387929 194 -- 228 46 -- 79 ribophosphonate triphosphate synthase complex putative catalytic subunit  
162 0.006351 0.1377 b1869 yecN -10.06 0.106335 266 -- 273 1 -- 8 MAPEG family inner membrane protein  
163 0.006379 0.1377 b2210 mqo -11.85 0.037664 161 -- 168 1 -- 8 malate dehydrogenase FAD/NAD(P)-binding domain  
164 0.006461 0.1377 b0864 artP -11.21 0.055481 74 -- 84 70 -- 80 arginine ABC transporter ATPase  
165 0.006479 0.1377 b3132 kbaZ -14.08 0.008730 160 -- 208 44 -- 89 tagatose 6-phosphate aldolase 1 kbaZ subunit b2095
166 0.006486 0.1377 b0440 hupB -11.63 0.043010 149 -- 200 46 -- 93 HU DNA-binding transcriptional regulator beta subunit  
167 0.006646 0.1402 b0007 yaaJ -8.17 0.274480 254 -- 261 1 -- 8 putative transporter  
168 0.006702 0.1406 b2051 wcaH -7.67 0.342256 86 -- 123 5 -- 40 GDP-mannose mannosyl hydrolase  
169 0.006778 0.1407 b3300 secY -11.17 0.056917 151 -- 190 56 -- 93 preprotein translocase membrane subunit  
170 0.006792 0.1407 b1884 cheR -8.41 0.246459 6 -- 26 68 -- 89 chemotaxis regulator protein-glutamate methyltransferase  
171 0.006844 0.141 b4537 yecJ -11.04 0.061373 25 -- 77 39 -- 91 DUF2766 family protein  
172 0.007014 0.1437 b3430 glgC -13.14 0.016567 21 -- 80 1 -- 39 glucose-1-phosphate adenylyltransferase  
173 0.007186 0.145 b3554 yiaF -10.99 0.063148 166 -- 198 46 -- 94 barrier effect co-colonization resistance factor; DUF3053 family lipoprotein  
174 0.007207 0.145 b1034 ycdX -9.36 0.154134 94 -- 120 35 -- 63 alkaline phosphatase  
175 0.007208 0.145 b1444 patD -10.32 0.092173 197 -- 205 69 -- 77 gamma-aminobutyraldehyde dehydrogenase  
176 0.007245 0.145 b0397 sbcC -11.91 0.036282 117 -- 185 1 -- 55 exonuclease dsDNA ATP-dependent  
177 0.007289 0.1451 b4002 zraP -14.65 0.005839 172 -- 192 36 -- 54 Zn-dependent periplasmic chaperone  
178 0.007484 0.1481 b1243 oppA -9.58 0.138030 24 -- 34 81 -- 91 oligopeptide ABC transporter periplasmic binding protein  
179 0.007631 0.1495 b3229 sspA -8.36 0.252415 276 -- 298 54 -- 83 stringent starvation protein A phage P1 late gene activator RNAP-associated acid-resistance protein inactive glutathione S-transferase homolog  
180 0.007638 0.1495 b2007 yeeX -12.65 0.022752 43 -- 93 41 -- 87 UPF0265 family protein  
181 0.007702 0.1499 b3145 yraK -8.82 0.202558 266 -- 280 35 -- 49 putative fimbrial-like adhesin protein b0533 b0941
182 0.007798 0.1509 b3523 yhjE -11.78 0.039321 145 -- 165 64 -- 85 putative MFS transporter; membrane protein  
183 0.007971 0.1528 b1874 cutC -9.62 0.134922 271 -- 300 54 -- 87 copper homeostasis protein  
184 0.008005 0.1528 b3209 elbB -11.15 0.057587 162 -- 192 53 -- 86 isoprenoid biosynthesis protein with amidotransferase-like domain  
185 0.008022 0.1528 b1813 nudL -20.51 0.000035 188 -- 228 15 -- 56 putative CoA pyrophosphohydrolase weak 3-phosphohydroxypyruvate phosphatase  
186 0.008102 0.1535 b1768 pncA -9.42 0.149628 191 -- 212 21 -- 39 nicotinamidase/pyrazinamidase  
187 0.008226 0.1545 b1446 ydcY -8.50 0.236240 3 -- 9 2 -- 8 DUF2526 family protein  
188 0.008258 0.1545 b3803 hemX -8.31 0.258101 280 -- 297 46 -- 62 putative uroporphyrinogen III methyltransferase  
189 0.008291 0.1545 b3882 yihU -11.60 0.044017 173 -- 244 4 -- 78 3-sulpholactaldehyde (SLA) reductase NADH-dependent; gamma-hydroxybutyrate dehydrogenase NADH-dependent b0509 b3125
190 0.008377 0.1548 b3167 rbfA -7.61 0.351010 14 -- 35 19 -- 38 30s ribosome binding factor  
191 0.008524 0.1548 b3203 hpf -8.75 0.209451 199 -- 206 68 -- 75 ribosome hibernation promoting factor HPF; stabilizes 100S dimers  
192 0.008587 0.1548 b2366 dsdA -12.64 0.022913 191 -- 232 21 -- 49 D-serine dehydratase  
193 0.00868 0.1548 b4226 ppa -9.88 0.117380 102 -- 122 43 -- 61 inorganic pyrophosphatase  
194 0.008684 0.1548 b1242 ychE -7.20 0.413978 105 -- 113 48 -- 56 UPF0056 family inner membrane protein  
195 0.008697 0.1548 b0192 nlpE -11.98 0.034903 167 -- 206 41 -- 78 lipoprotein involved with copper homeostasis and adhesion  
196 0.008885 0.1548 b3052 hldE -13.36 0.014255 113 -- 160 38 -- 93 heptose 7-phosphate kinase and heptose 1-phosphate adenyltransferase  
197 0.008895 0.1548 b2844 yqeF -5.48 0.714940 222 -- 246 20 -- 39 short chain acyltransferase  
198 0.008909 0.1548 b2205 napG -12.90 0.019402 153 -- 203 39 -- 89 ferredoxin-type protein  
199 0.008927 0.1548 b1019 efeB -11.91 0.036296 188 -- 218 52 -- 88 deferrrochelatase periplasmic  
200 0.008935 0.1548 b1427 rimL -11.51 0.046463 223 -- 252 68 -- 89 ribosomal-protein-L7/L12-serine acetyltransferase  

Details of Selected Interaction Download Interaction Details 

mRNA

sRNA


		

		

		

		
		

			

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
			

			

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
			

		
 
		
		

		
		

		
		
		
		
Evolutionary conservation of mRNA targets
			(alignment generated with
			Jalview)

		
		
		
Evolutionary conservation of sRNA
			(alignment generated with
			Jalview)

		
		
		

		
	

	
	
	

	
	
	




			 
	





	
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Results are computed with CopraRNA version 2.1.2



		 
	

			





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