| 61 |
0.001027 |
0.05816 |
b0443 |
fadM |
-9.40 |
0.151451 |
193 -- 205 |
69 -- 81 |
long-chain acyl-CoA thioesterase III |
|
_____________192___________206\n_____________|_____________|\n5'-GUU...AGGUU____C________AACAC...AUG-3'\n______________AUUG_GCUAUGCA\n______________||||_||||||||\n______________UAAC_CGAUACGU\n3'-UUU...UUAGU____A________CAUUA...ACG-5'\n_____________|_____________|\n_____________82____________68\n |
199 -- 205 |
69 -- 75 |
-15.9471 kcal/mol |
4.72824 kcal/mol |
1.82028 kcal/mol |
192 206@LB@ | |@LB@5'-GUU...AGGUU C AACAC...AUG-3'@LB@ AUUG GCUAUGCA@LB@ |||| ||||||||@LB@ UAAC CGAUACGU@LB@3'-UUU...UUAGU A CAUUA...ACG-5'@LB@ | |@LB@ 82 68@LB@@LB@@LB@Energy -9.40 kcal/mol@LB@Hybridization Energy -15.9471 kcal/mol@LB@Unfolding Energy - mRNA 4.72824 kcal/mol@LB@Unfolding Energy - sRNA 1.82028 kcal/mol@LB@@LB@Position - mRNA 193 -- 205@LB@Position - sRNA 69 -- 81@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 69 -- 75@LB@ |
| 62 |
0.001027 |
0.05816 |
b0717 |
ybgP |
-6.75 |
0.488398 |
48 -- 57 |
53 -- 62 |
putative periplasmic pilin chaperone |
b3047 |
_____________47_________58\n_____________|__________|\n5'-GCG...GUUGG__________CAUGC...CCA-3'\n______________CGAGGAAGGA\n______________|:|::|||||\n______________GUUUUUUCCU\n3'-UUU...AUUAA__________UCAUU...ACG-5'\n_____________|__________|\n_____________63_________52\n |
51 -- 57 |
53 -- 59 |
-10.1576 kcal/mol |
0.982686 kcal/mol |
2.4254 kcal/mol |
47 58@LB@ | |@LB@5'-GCG...GUUGG CAUGC...CCA-3'@LB@ CGAGGAAGGA@LB@ |:|::|||||@LB@ GUUUUUUCCU@LB@3'-UUU...AUUAA UCAUU...ACG-5'@LB@ | |@LB@ 63 52@LB@@LB@@LB@Energy -6.75 kcal/mol@LB@Hybridization Energy -10.1576 kcal/mol@LB@Unfolding Energy - mRNA 0.982686 kcal/mol@LB@Unfolding Energy - sRNA 2.4254 kcal/mol@LB@@LB@Position - mRNA 48 -- 57@LB@Position - sRNA 53 -- 62@LB@Position Seed - mRNA 51 -- 57@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 63 |
0.00104 |
0.05816 |
b1856 |
mepM |
-14.49 |
0.006560 |
139 -- 249 |
1 -- 88 |
murein DD-endopeptidase space-maker hydrolase septation protein |
|
_____________138________________________________________________________________________________________________________________250\n_____________|__________________________________________________________________________________________________________________|\n5'-CAA...AUUCC__________A___CAACCAG______AGCUGCCU_________AU___U__G__A___AUUAC_______AGAUA____GCUCU_____CC_______UAAUA__________GACCA...UCG-3'\n______________UGAGUCAAUU__GC_______UAUGCG_________GAAAGGAG__UAA_GA_GA_GUG_____GUGCAAC_____GCCC_____GUCGC__UGGCGUU_____AUUUACC_GC\n______________:||:||||||__||_______|||||:_________:||||||:__|||_||_:|_:||_____|:|||||_____||||_____:||||__||:||||_____|||:|||_||\n______________GCUUAGUUAA__CG_______AUACGU_________UUUUCCUU__AUU_CU_UU_UAC_____CGCGUUG_____CGGG_____UAGCG__ACUGCAA_____UAAGUGG_CG\n3'-UUU...AGCAU__________CA_______________CAUUAAGUU________C_______G__A___CU_____________________________A________CG__________A__-5'\n_____________|_________________________________________________________________________________________________________________|\n_____________89________________________________________________________________________________________________________________1\n |
241 -- 247 |
4 -- 10 |
-60.5282 kcal/mol |
25.2709 kcal/mol |
20.7761 kcal/mol |
138 250@LB@ | |@LB@5'-CAA...AUUCC A CAACCAG AGCUGCCU AU U G A AUUAC AGAUA GCUCU CC UAAUA GACCA...UCG-3'@LB@ UGAGUCAAUU GC UAUGCG GAAAGGAG UAA GA GA GUG GUGCAAC GCCC GUCGC UGGCGUU AUUUACC GC@LB@ :||:|||||| || |||||: :||||||: ||| || :| :|| |:||||| |||| :|||| ||:|||| |||:||| ||@LB@ GCUUAGUUAA CG AUACGU UUUUCCUU AUU CU UU UAC CGCGUUG CGGG UAGCG ACUGCAA UAAGUGG CG@LB@3'-UUU...AGCAU CA CAUUAAGUU C G A CU A CG A -5'@LB@ | |@LB@ 89 1@LB@@LB@@LB@Energy -14.49 kcal/mol@LB@Hybridization Energy -60.5282 kcal/mol@LB@Unfolding Energy - mRNA 25.2709 kcal/mol@LB@Unfolding Energy - sRNA 20.7761 kcal/mol@LB@@LB@Position - mRNA 139 -- 249@LB@Position - sRNA 1 -- 88@LB@Position Seed - mRNA 241 -- 247@LB@Position Seed - sRNA 4 -- 10@LB@ |
| 64 |
0.001067 |
0.05874 |
b3340 |
fusA |
-13.60 |
0.012173 |
191 -- 223 |
21 -- 57 |
protein chain elongation factor EF-G GTP-binding |
|
_____________190_____________________________________224\n_____________|_______________________________________|\n5'-AAC...UAAAC____________________CUC__A____A________ACGCU...ACA-3'\n______________GAGGAA_____ACAA_AUGG___GU_CAAC_CCCAUCGC\n______________:|||||_____||||_||||___|:_||||_||||||||\n______________UUCCUU_____UGUU_UACC___CG_GUUG_GGGUAGCG\n3'-UUU...GUUUU______CAUUC____A____U____C____C________AACUG...ACG-5'\n_____________|_______________________________________|\n_____________58______________________________________20\n |
217 -- 223 |
21 -- 27 |
-33.2696 kcal/mol |
6.00361 kcal/mol |
13.6712 kcal/mol |
190 224@LB@ | |@LB@5'-AAC...UAAAC CUC A A ACGCU...ACA-3'@LB@ GAGGAA ACAA AUGG GU CAAC CCCAUCGC@LB@ :||||| |||| |||| |: |||| ||||||||@LB@ UUCCUU UGUU UACC CG GUUG GGGUAGCG@LB@3'-UUU...GUUUU CAUUC A U C C AACUG...ACG-5'@LB@ | |@LB@ 58 20@LB@@LB@@LB@Energy -13.60 kcal/mol@LB@Hybridization Energy -33.2696 kcal/mol@LB@Unfolding Energy - mRNA 6.00361 kcal/mol@LB@Unfolding Energy - sRNA 13.6712 kcal/mol@LB@@LB@Position - mRNA 191 -- 223@LB@Position - sRNA 21 -- 57@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 21 -- 27@LB@ |
| 65 |
0.001098 |
0.05953 |
b1479 |
maeA |
-10.62 |
0.077885 |
180 -- 205 |
37 -- 65 |
malate dehydrogenase decarboxylating NAD-requiring; malic enzyme |
|
_____________179___________________________206\n_____________|_____________________________|\n5'-UAG...UGGAU_______________________C_____ACCAA...GCA-3'\n______________AUUCAAAAAAG__AGUGAG_UGA_AUGGA\n______________|||||||||||__|||:||_::|_|||||\n______________UAAGUUUUUUC__UCAUUC_GUU_UACCU\n3'-UUU...GUCAU___________CU______U___A_____CGCGU...ACG-5'\n_____________|_____________________________|\n_____________66____________________________36\n |
184 -- 190 |
55 -- 61 |
-21.4117 kcal/mol |
4.89609 kcal/mol |
5.88101 kcal/mol |
179 206@LB@ | |@LB@5'-UAG...UGGAU C ACCAA...GCA-3'@LB@ AUUCAAAAAAG AGUGAG UGA AUGGA@LB@ ||||||||||| |||:|| ::| |||||@LB@ UAAGUUUUUUC UCAUUC GUU UACCU@LB@3'-UUU...GUCAU CU U A CGCGU...ACG-5'@LB@ | |@LB@ 66 36@LB@@LB@@LB@Energy -10.62 kcal/mol@LB@Hybridization Energy -21.4117 kcal/mol@LB@Unfolding Energy - mRNA 4.89609 kcal/mol@LB@Unfolding Energy - sRNA 5.88101 kcal/mol@LB@@LB@Position - mRNA 180 -- 205@LB@Position - sRNA 37 -- 65@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 66 |
0.001137 |
0.05992 |
b0076 |
leuO |
-9.90 |
0.116504 |
167 -- 195 |
35 -- 60 |
global transcription factor |
|
_____________166_____________________________196\n_____________|_______________________________|\n5'-UAU...AUAAG___________UAAGUGU_____________UAAGU...UGA-3'\n______________GGAAAGGGAGU_______GACA__GUGGAGU\n______________::|||||:|||_______||||__:|||||:\n______________UUUUUCCUUCA_______CUGU__UACCUCG\n3'-UUU...UAAGU___________UU_________UA_______CGUUG...ACG-5'\n_____________|_______________________________|\n_____________61______________________________34\n |
189 -- 195 |
35 -- 41 |
-23.1584 kcal/mol |
8.98888 kcal/mol |
4.23745 kcal/mol |
166 196@LB@ | |@LB@5'-UAU...AUAAG UAAGUGU UAAGU...UGA-3'@LB@ GGAAAGGGAGU GACA GUGGAGU@LB@ ::|||||:||| |||| :|||||:@LB@ UUUUUCCUUCA CUGU UACCUCG@LB@3'-UUU...UAAGU UU UA CGUUG...ACG-5'@LB@ | |@LB@ 61 34@LB@@LB@@LB@Energy -9.90 kcal/mol@LB@Hybridization Energy -23.1584 kcal/mol@LB@Unfolding Energy - mRNA 8.98888 kcal/mol@LB@Unfolding Energy - sRNA 4.23745 kcal/mol@LB@@LB@Position - mRNA 167 -- 195@LB@Position - sRNA 35 -- 60@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 67 |
0.00114 |
0.05992 |
b4141 |
yjeH |
-12.53 |
0.024616 |
129 -- 146 |
73 -- 89 |
putative transporter |
|
_____________128________________147\n_____________|__________________|\n5'-CAG...CAUAA_______U__________CCAUC...CUG-3'\n______________GCGAAUC_GAUUGUGCUA\n______________:||||||_:|||||||||\n______________UGCUUAG_UUAACACGAU\n3'-UUU...CAGCA__________________ACGUC...ACG-5'\n_____________|__________________|\n_____________90_________________72\n |
140 -- 146 |
73 -- 79 |
-22.1843 kcal/mol |
7.4128 kcal/mol |
2.24587 kcal/mol |
128 147@LB@ | |@LB@5'-CAG...CAUAA U CCAUC...CUG-3'@LB@ GCGAAUC GAUUGUGCUA@LB@ :|||||| :|||||||||@LB@ UGCUUAG UUAACACGAU@LB@3'-UUU...CAGCA ACGUC...ACG-5'@LB@ | |@LB@ 90 72@LB@@LB@@LB@Energy -12.53 kcal/mol@LB@Hybridization Energy -22.1843 kcal/mol@LB@Unfolding Energy - mRNA 7.4128 kcal/mol@LB@Unfolding Energy - sRNA 2.24587 kcal/mol@LB@@LB@Position - mRNA 129 -- 146@LB@Position - sRNA 73 -- 89@LB@Position Seed - mRNA 140 -- 146@LB@Position Seed - sRNA 73 -- 79@LB@ |
| 68 |
0.001184 |
0.06134 |
b3188 |
sfsB |
-9.82 |
0.121108 |
186 -- 205 |
37 -- 57 |
malPQ operon transcriptional activator |
|
_____________185___________________206\n_____________|_____________________|\n5'-CGG...AACUU____________AAAA_____AAGUA...UGA-3'\n______________AAGG_AGUGAGG____AUGGA\n______________||||_|||:||:____|||||\n______________UUCC_UCAUUCU____UACCU\n3'-UUU...GUUUU____U_______GUUA_____CGCGU...ACG-5'\n_____________|_____________________|\n_____________58____________________36\n |
190 -- 196 |
46 -- 52 |
-17.294 kcal/mol |
3.7439 kcal/mol |
3.68958 kcal/mol |
185 206@LB@ | |@LB@5'-CGG...AACUU AAAA AAGUA...UGA-3'@LB@ AAGG AGUGAGG AUGGA@LB@ |||| |||:||: |||||@LB@ UUCC UCAUUCU UACCU@LB@3'-UUU...GUUUU U GUUA CGCGU...ACG-5'@LB@ | |@LB@ 58 36@LB@@LB@@LB@Energy -9.82 kcal/mol@LB@Hybridization Energy -17.294 kcal/mol@LB@Unfolding Energy - mRNA 3.7439 kcal/mol@LB@Unfolding Energy - sRNA 3.68958 kcal/mol@LB@@LB@Position - mRNA 186 -- 205@LB@Position - sRNA 37 -- 57@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 69 |
0.001222 |
0.06239 |
b0699 |
ybfA |
-13.19 |
0.016050 |
183 -- 205 |
37 -- 62 |
DUF2517 family protein |
|
_____________182________________________206\n_____________|__________________________|\n5'-AUG...AGAUA____________AAA___________ACUCU...GGA-3'\n______________CAAAAGGGGGAG______AGUAUGGA\n______________|||||::||:||______|:||||||\n______________GUUUUUUCCUUC______UUAUACCU\n3'-UUU...AUUAA____________AUUCUG________CGCGU...ACG-5'\n_____________|__________________________|\n_____________63_________________________36\n |
199 -- 205 |
37 -- 43 |
-21.7 kcal/mol |
3.27833 kcal/mol |
5.2343 kcal/mol |
182 206@LB@ | |@LB@5'-AUG...AGAUA AAA ACUCU...GGA-3'@LB@ CAAAAGGGGGAG AGUAUGGA@LB@ |||||::||:|| |:||||||@LB@ GUUUUUUCCUUC UUAUACCU@LB@3'-UUU...AUUAA AUUCUG CGCGU...ACG-5'@LB@ | |@LB@ 63 36@LB@@LB@@LB@Energy -13.19 kcal/mol@LB@Hybridization Energy -21.7 kcal/mol@LB@Unfolding Energy - mRNA 3.27833 kcal/mol@LB@Unfolding Energy - sRNA 5.2343 kcal/mol@LB@@LB@Position - mRNA 183 -- 205@LB@Position - sRNA 37 -- 62@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 70 |
0.001371 |
0.06901 |
b2989 |
yghU |
-9.78 |
0.124117 |
251 -- 269 |
4 -- 23 |
putative S-transferase |
|
_____________250__________________270\n_____________|____________________|\n5'-UUA...AAAUC_________GC_________AAUAU...CGC-3'\n______________CGC_UGGCG__GCGUUCGCC\n______________|||_||:||__||:|||:||\n______________GCG_ACUGC__CGUAAGUGG\n3'-UUU...GGGUA___A_____AA_________ACG-5'\n_____________|____________________|\n_____________24___________________3\n |
263 -- 269 |
4 -- 10 |
-26.6155 kcal/mol |
8.73321 kcal/mol |
8.10973 kcal/mol |
250 270@LB@ | |@LB@5'-UUA...AAAUC GC AAUAU...CGC-3'@LB@ CGC UGGCG GCGUUCGCC@LB@ ||| ||:|| ||:|||:||@LB@ GCG ACUGC CGUAAGUGG@LB@3'-UUU...GGGUA A AA ACG-5'@LB@ | |@LB@ 24 3@LB@@LB@@LB@Energy -9.78 kcal/mol@LB@Hybridization Energy -26.6155 kcal/mol@LB@Unfolding Energy - mRNA 8.73321 kcal/mol@LB@Unfolding Energy - sRNA 8.10973 kcal/mol@LB@@LB@Position - mRNA 251 -- 269@LB@Position - sRNA 4 -- 23@LB@Position Seed - mRNA 263 -- 269@LB@Position Seed - sRNA 4 -- 10@LB@ |
