| 199 |
0.0417 |
0.6177 |
b4070 |
nrfA |
-7.95 |
0.106497 |
2 -- 16 |
44 -- 55 |
nitrite reductase formate-dependent cytochrome |
|
_____________1_______________17\n_____________|_______________|\n__________5'-U___GAA_________GAUAC...CAA-3'\n______________GUU___AAAGAGGAA\n______________||:___|||||||||\n______________CAG___UUUCUCCUU\n3'-UUU...CCGGG_______________AAAGU...ACA-5'\n_____________|_______________|\n_____________56______________43\n |
10 -- 16 |
44 -- 50 |
-11.2989 kcal/mol |
2.40804 kcal/mol |
0.941432 kcal/mol |
1 17@LB@ | |@LB@ 5'-U GAA GAUAC...CAA-3'@LB@ GUU AAAGAGGAA@LB@ ||: |||||||||@LB@ CAG UUUCUCCUU@LB@3'-UUU...CCGGG AAAGU...ACA-5'@LB@ | |@LB@ 56 43@LB@@LB@@LB@Energy -7.95 kcal/mol@LB@Hybridization Energy -11.2989 kcal/mol@LB@Unfolding Energy - mRNA 2.40804 kcal/mol@LB@Unfolding Energy - sRNA 0.941432 kcal/mol@LB@@LB@Position - mRNA 2 -- 16@LB@Position - sRNA 44 -- 55@LB@Position Seed - mRNA 10 -- 16@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 3 |
9.453e-06 |
0.01014 |
b0681 |
chiP |
-16.40 |
0.001982 |
182 -- 193 |
45 -- 56 |
chitoporin uptake of chitosugars |
|
_____________181__________194\n_____________|____________|\n5'-CUU...UUAUA____________UUAAC...AAG-3'\n______________CGUCAAAGAGGA\n______________||||||||||||\n______________GCAGUUUCUCCU\n3'-UUU...ACCGG____________UAAAG...ACA-5'\n_____________|____________|\n_____________57___________44\n |
187 -- 193 |
45 -- 51 |
-19.4659 kcal/mol |
2.1233 kcal/mol |
0.938337 kcal/mol |
181 194@LB@ | |@LB@5'-CUU...UUAUA UUAAC...AAG-3'@LB@ CGUCAAAGAGGA@LB@ ||||||||||||@LB@ GCAGUUUCUCCU@LB@3'-UUU...ACCGG UAAAG...ACA-5'@LB@ | |@LB@ 57 44@LB@@LB@@LB@Energy -16.40 kcal/mol@LB@Hybridization Energy -19.4659 kcal/mol@LB@Unfolding Energy - mRNA 2.1233 kcal/mol@LB@Unfolding Energy - sRNA 0.938337 kcal/mol@LB@@LB@Position - mRNA 182 -- 193@LB@Position - sRNA 45 -- 56@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 6 |
0.0006545 |
0.351 |
b1857 |
znuA |
-11.78 |
0.017745 |
58 -- 67 |
45 -- 54 |
zinc ABC transporter periplasmic binding protein |
|
_____________57_________68\n_____________|__________|\n5'-GCG...ACACA__________CGCGG...AAC-3'\n______________UCAGAGAGGA\n______________|||:||||||\n______________AGUUUCUCCU\n3'-UUU...CGGGC__________UAAAG...ACA-5'\n_____________|__________|\n_____________55_________44\n |
61 -- 67 |
45 -- 51 |
-14.7441 kcal/mol |
2.03423 kcal/mol |
0.929144 kcal/mol |
57 68@LB@ | |@LB@5'-GCG...ACACA CGCGG...AAC-3'@LB@ UCAGAGAGGA@LB@ |||:||||||@LB@ AGUUUCUCCU@LB@3'-UUU...CGGGC UAAAG...ACA-5'@LB@ | |@LB@ 55 44@LB@@LB@@LB@Energy -11.78 kcal/mol@LB@Hybridization Energy -14.7441 kcal/mol@LB@Unfolding Energy - mRNA 2.03423 kcal/mol@LB@Unfolding Energy - sRNA 0.929144 kcal/mol@LB@@LB@Position - mRNA 58 -- 67@LB@Position - sRNA 45 -- 54@LB@Position Seed - mRNA 61 -- 67@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 12 |
0.002398 |
0.593 |
b1114 |
mfd |
-13.52 |
0.007793 |
210 -- 241 |
45 -- 73 |
transcription-repair coupling factor |
|
_____________209______________________________242\n_____________|________________________________|\n5'-UUC...CUGAA____________ACGCU___________C___UGAGC...AAA-3'\n______________CAAUAUCGUUAU_____GCCCGUCAAAG_GGG\n______________||||||||:|||_____|||||||||||_||:\n______________GUUAUAGCGAUA_____CGGGCAGUUUC_CCU\n3'-UUU...UACCG____________AC______________U___UAAAG...ACA-5'\n_____________|________________________________|\n_____________74_______________________________44\n |
231 -- 237 |
49 -- 55 |
-37.142 kcal/mol |
12.2919 kcal/mol |
11.3343 kcal/mol |
209 242@LB@ | |@LB@5'-UUC...CUGAA ACGCU C UGAGC...AAA-3'@LB@ CAAUAUCGUUAU GCCCGUCAAAG GGG@LB@ ||||||||:||| ||||||||||| ||:@LB@ GUUAUAGCGAUA CGGGCAGUUUC CCU@LB@3'-UUU...UACCG AC U UAAAG...ACA-5'@LB@ | |@LB@ 74 44@LB@@LB@@LB@Energy -13.52 kcal/mol@LB@Hybridization Energy -37.142 kcal/mol@LB@Unfolding Energy - mRNA 12.2919 kcal/mol@LB@Unfolding Energy - sRNA 11.3343 kcal/mol@LB@@LB@Position - mRNA 210 -- 241@LB@Position - sRNA 45 -- 73@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 21 |
0.004054 |
0.5992 |
b2076 |
mdtC |
-11.67 |
0.018717 |
158 -- 193 |
45 -- 78 |
multidrug efflux system subunit C |
|
_____________157____________________________________194\n_____________|______________________________________|\n5'-CUC...GCAUU____A____AAGC____UU__________UG_______GGCGU...CGG-3'\n______________GUGG_CCAA____CGCU____GCCCGUCA__AAGAGGA\n______________:|||_||||____||||____||||||||__|||||||\n______________UACC_GGUU____GCGA____CGGGCAGU__UUCUCCU\n_____3'-UUUUUU_________AUA_____UAAC_________________UAAAG...ACA-5'\n_____________|______________________________________|\n_____________79_____________________________________44\n |
187 -- 193 |
45 -- 51 |
-37.8051 kcal/mol |
12.6053 kcal/mol |
13.5316 kcal/mol |
157 194@LB@ | |@LB@5'-CUC...GCAUU A AAGC UU UG GGCGU...CGG-3'@LB@ GUGG CCAA CGCU GCCCGUCA AAGAGGA@LB@ :||| |||| |||| |||||||| |||||||@LB@ UACC GGUU GCGA CGGGCAGU UUCUCCU@LB@ 3'-UUUUUU AUA UAAC UAAAG...ACA-5'@LB@ | |@LB@ 79 44@LB@@LB@@LB@Energy -11.67 kcal/mol@LB@Hybridization Energy -37.8051 kcal/mol@LB@Unfolding Energy - mRNA 12.6053 kcal/mol@LB@Unfolding Energy - sRNA 13.5316 kcal/mol@LB@@LB@Position - mRNA 158 -- 193@LB@Position - sRNA 45 -- 78@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 30 |
0.005789 |
0.6127 |
b2688 |
gshA |
-11.51 |
0.020183 |
254 -- 264 |
45 -- 55 |
glutamate-cysteine ligase |
|
_____________253_________265\n_____________|___________|\n5'-UGU...CAGGC___________UACAG...UUA-3'\n______________GUUAAAGGGGA\n______________||:||||:|||\n______________CAGUUUCUCCU\n3'-UUU...CCGGG___________UAAAG...ACA-5'\n_____________|___________|\n_____________56__________44\n |
258 -- 264 |
45 -- 51 |
-13.8935 kcal/mol |
1.45381 kcal/mol |
0.930875 kcal/mol |
253 265@LB@ | |@LB@5'-UGU...CAGGC UACAG...UUA-3'@LB@ GUUAAAGGGGA@LB@ ||:||||:|||@LB@ CAGUUUCUCCU@LB@3'-UUU...CCGGG UAAAG...ACA-5'@LB@ | |@LB@ 56 44@LB@@LB@@LB@Energy -11.51 kcal/mol@LB@Hybridization Energy -13.8935 kcal/mol@LB@Unfolding Energy - mRNA 1.45381 kcal/mol@LB@Unfolding Energy - sRNA 0.930875 kcal/mol@LB@@LB@Position - mRNA 254 -- 264@LB@Position - sRNA 45 -- 55@LB@Position Seed - mRNA 258 -- 264@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 32 |
0.006131 |
0.6129 |
b2585 |
pssA |
-9.74 |
0.046374 |
32 -- 41 |
45 -- 54 |
phosphatidylserine synthase; CDP-diacylglycerol-serine O-phosphatidyltransferase |
|
_____________31_________42\n_____________|__________|\n5'-CGC...CCAGC__________GAUCG...CCG-3'\n______________UCGAAGAGGG\n______________||:||||||:\n______________AGUUUCUCCU\n3'-UUU...CGGGC__________UAAAG...ACA-5'\n_____________|__________|\n_____________55_________44\n |
35 -- 41 |
45 -- 51 |
-13.2862 kcal/mol |
2.61225 kcal/mol |
0.929144 kcal/mol |
31 42@LB@ | |@LB@5'-CGC...CCAGC GAUCG...CCG-3'@LB@ UCGAAGAGGG@LB@ ||:||||||:@LB@ AGUUUCUCCU@LB@3'-UUU...CGGGC UAAAG...ACA-5'@LB@ | |@LB@ 55 44@LB@@LB@@LB@Energy -9.74 kcal/mol@LB@Hybridization Energy -13.2862 kcal/mol@LB@Unfolding Energy - mRNA 2.61225 kcal/mol@LB@Unfolding Energy - sRNA 0.929144 kcal/mol@LB@@LB@Position - mRNA 32 -- 41@LB@Position - sRNA 45 -- 54@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 36 |
0.007218 |
0.6129 |
b3938 |
metJ |
-9.22 |
0.059290 |
181 -- 189 |
45 -- 53 |
transcriptional repressor S-adenosylmethionine-binding |
|
_____________180_______190\n_____________|_________|\n5'-UCU...AUUGA_________UUAAG...UGU-3'\n______________CGAAGAGGA\n______________|:|||||||\n______________GUUUCUCCU\n3'-UUU...GGGCA_________UAAAG...ACA-5'\n_____________|_________|\n_____________54________44\n |
183 -- 189 |
45 -- 51 |
-12.478 kcal/mol |
2.34125 kcal/mol |
0.917553 kcal/mol |
180 190@LB@ | |@LB@5'-UCU...AUUGA UUAAG...UGU-3'@LB@ CGAAGAGGA@LB@ |:|||||||@LB@ GUUUCUCCU@LB@3'-UUU...GGGCA UAAAG...ACA-5'@LB@ | |@LB@ 54 44@LB@@LB@@LB@Energy -9.22 kcal/mol@LB@Hybridization Energy -12.478 kcal/mol@LB@Unfolding Energy - mRNA 2.34125 kcal/mol@LB@Unfolding Energy - sRNA 0.917553 kcal/mol@LB@@LB@Position - mRNA 181 -- 189@LB@Position - sRNA 45 -- 53@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 38 |
0.007716 |
0.6129 |
b0480 |
ushA |
-6.97 |
0.165152 |
186 -- 197 |
45 -- 55 |
bifunctional UDP-sugar hydrolase/5'-nucleotidase |
|
_____________185__________198\n_____________|____________|\n5'-AGG...AUCAG_________A__AGUAU...AAA-3'\n______________GUCAGGGAG_GA\n______________||||::|||_||\n______________CAGUUUCUC_CU\n3'-UUU...CCGGG____________UAAAG...ACA-5'\n_____________|____________|\n_____________56___________44\n |
188 -- 194 |
47 -- 53 |
-13.3467 kcal/mol |
5.44454 kcal/mol |
0.930875 kcal/mol |
185 198@LB@ | |@LB@5'-AGG...AUCAG A AGUAU...AAA-3'@LB@ GUCAGGGAG GA@LB@ ||||::||| ||@LB@ CAGUUUCUC CU@LB@3'-UUU...CCGGG UAAAG...ACA-5'@LB@ | |@LB@ 56 44@LB@@LB@@LB@Energy -6.97 kcal/mol@LB@Hybridization Energy -13.3467 kcal/mol@LB@Unfolding Energy - mRNA 5.44454 kcal/mol@LB@Unfolding Energy - sRNA 0.930875 kcal/mol@LB@@LB@Position - mRNA 186 -- 197@LB@Position - sRNA 45 -- 55@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 62 |
0.01306 |
0.6177 |
b4034 |
malE |
-9.62 |
0.049140 |
112 -- 120 |
45 -- 53 |
maltose transporter subunit |
|
_____________111_______121\n_____________|_________|\n5'-AGG...AGGGG_________UGGAA...UGG-3'\n______________CAAGGAGGA\n______________|||:|||||\n______________GUUUCUCCU\n3'-UUU...GGGCA_________UAAAG...ACA-5'\n_____________|_________|\n_____________54________44\n |
114 -- 120 |
45 -- 51 |
-12.5673 kcal/mol |
2.02865 kcal/mol |
0.917553 kcal/mol |
111 121@LB@ | |@LB@5'-AGG...AGGGG UGGAA...UGG-3'@LB@ CAAGGAGGA@LB@ |||:|||||@LB@ GUUUCUCCU@LB@3'-UUU...GGGCA UAAAG...ACA-5'@LB@ | |@LB@ 54 44@LB@@LB@@LB@Energy -9.62 kcal/mol@LB@Hybridization Energy -12.5673 kcal/mol@LB@Unfolding Energy - mRNA 2.02865 kcal/mol@LB@Unfolding Energy - sRNA 0.917553 kcal/mol@LB@@LB@Position - mRNA 112 -- 120@LB@Position - sRNA 45 -- 53@LB@Position Seed - mRNA 114 -- 120@LB@Position Seed - sRNA 45 -- 51@LB@ |
