| 68 |
0.01422 |
0.6177 |
b3826 |
yigL |
-7.04 |
0.159921 |
44 -- 50 |
49 -- 55 |
pyridoxal phosphate phosphatase |
|
_____________43______51\n_____________|_______|\n5'-GCA...AUCCU_______GAGGA...CGC-3'\n______________GUCGAAG\n______________|||:|||\n______________CAGUUUC\n3'-UUU...CCGGG_______UCCUU...ACA-5'\n_____________|_______|\n_____________56______48\n |
44 -- 50 |
49 -- 55 |
-7.68974 kcal/mol |
0.331193 kcal/mol |
0.314364 kcal/mol |
43 51@LB@ | |@LB@5'-GCA...AUCCU GAGGA...CGC-3'@LB@ GUCGAAG@LB@ |||:|||@LB@ CAGUUUC@LB@3'-UUU...CCGGG UCCUU...ACA-5'@LB@ | |@LB@ 56 48@LB@@LB@@LB@Energy -7.04 kcal/mol@LB@Hybridization Energy -7.68974 kcal/mol@LB@Unfolding Energy - mRNA 0.331193 kcal/mol@LB@Unfolding Energy - sRNA 0.314364 kcal/mol@LB@@LB@Position - mRNA 44 -- 50@LB@Position - sRNA 49 -- 55@LB@Position Seed - mRNA 44 -- 50@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 161 |
0.03295 |
0.6177 |
b1630 |
rsxD |
-5.86 |
0.265655 |
34 -- 42 |
49 -- 57 |
SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport complex |
|
_____________33________43\n_____________|_________|\n5'-AGC...AGCUG_________CGGCU...CAG-3'\n______________CCGUCGAAG\n______________|||||:|||\n______________GGCAGUUUC\n3'-UUU...AACCG_________UCCUU...ACA-5'\n_____________|_________|\n_____________58________48\n |
36 -- 42 |
49 -- 55 |
-12.0908 kcal/mol |
3.50131 kcal/mol |
2.72876 kcal/mol |
33 43@LB@ | |@LB@5'-AGC...AGCUG CGGCU...CAG-3'@LB@ CCGUCGAAG@LB@ |||||:|||@LB@ GGCAGUUUC@LB@3'-UUU...AACCG UCCUU...ACA-5'@LB@ | |@LB@ 58 48@LB@@LB@@LB@Energy -5.86 kcal/mol@LB@Hybridization Energy -12.0908 kcal/mol@LB@Unfolding Energy - mRNA 3.50131 kcal/mol@LB@Unfolding Energy - sRNA 2.72876 kcal/mol@LB@@LB@Position - mRNA 34 -- 42@LB@Position - sRNA 49 -- 57@LB@Position Seed - mRNA 36 -- 42@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 194 |
0.04051 |
0.6177 |
b0814 |
ompX |
-6.96 |
0.165642 |
107 -- 118 |
50 -- 61 |
outer membrane protein X |
|
_____________106__________119\n_____________|____________|\n5'-CUG...UGAAA____________CAUCA...CAC-3'\n______________UGGCCCGUUAGA\n______________||||||||:|:|\n______________ACCGGGCAGUUU\n3'-UUU...CGAUA____________CUCCU...ACA-5'\n_____________|____________|\n_____________62___________49\n |
111 -- 117 |
51 -- 57 |
-20.1081 kcal/mol |
2.98628 kcal/mol |
10.1573 kcal/mol |
106 119@LB@ | |@LB@5'-CUG...UGAAA CAUCA...CAC-3'@LB@ UGGCCCGUUAGA@LB@ ||||||||:|:|@LB@ ACCGGGCAGUUU@LB@3'-UUU...CGAUA CUCCU...ACA-5'@LB@ | |@LB@ 62 49@LB@@LB@@LB@Energy -6.96 kcal/mol@LB@Hybridization Energy -20.1081 kcal/mol@LB@Unfolding Energy - mRNA 2.98628 kcal/mol@LB@Unfolding Energy - sRNA 10.1573 kcal/mol@LB@@LB@Position - mRNA 107 -- 118@LB@Position - sRNA 50 -- 61@LB@Position Seed - mRNA 111 -- 117@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 200 |
0.04173 |
0.6177 |
b3155 |
yhbQ |
-7.74 |
0.117248 |
9 -- 16 |
50 -- 57 |
GIY-YIG nuclease superfamily protein |
|
_____________8________17\n_____________|________|\n___5'-UUUUUCUU________AUGUA...GCG-3'\n______________CCGUCAAA\n______________||||||||\n______________GGCAGUUU\n3'-UUU...AACCG________CUCCU...ACA-5'\n_____________|________|\n_____________58_______49\n |
10 -- 16 |
50 -- 56 |
-10.5697 kcal/mol |
0.110673 kcal/mol |
2.72137 kcal/mol |
8 17@LB@ | |@LB@ 5'-UUUUUCUU AUGUA...GCG-3'@LB@ CCGUCAAA@LB@ ||||||||@LB@ GGCAGUUU@LB@3'-UUU...AACCG CUCCU...ACA-5'@LB@ | |@LB@ 58 49@LB@@LB@@LB@Energy -7.74 kcal/mol@LB@Hybridization Energy -10.5697 kcal/mol@LB@Unfolding Energy - mRNA 0.110673 kcal/mol@LB@Unfolding Energy - sRNA 2.72137 kcal/mol@LB@@LB@Position - mRNA 9 -- 16@LB@Position - sRNA 50 -- 57@LB@Position Seed - mRNA 10 -- 16@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 186 |
0.03879 |
0.6177 |
b2898 |
ygfZ |
-4.98 |
0.377094 |
224 -- 230 |
51 -- 57 |
iron-sulfur cluster repair protein plumbagin resistance |
|
_____________223_____231\n_____________|_______|\n5'-CGU...CCUCC_______CCUAC...CUG-3'\n______________CCGUCAG\n______________||||||:\n______________GGCAGUU\n3'-UUU...AACCG_______UCUCC...ACA-5'\n_____________|_______|\n_____________58______50\n |
224 -- 230 |
51 -- 57 |
-9.02345 kcal/mol |
1.32881 kcal/mol |
2.71582 kcal/mol |
223 231@LB@ | |@LB@5'-CGU...CCUCC CCUAC...CUG-3'@LB@ CCGUCAG@LB@ ||||||:@LB@ GGCAGUU@LB@3'-UUU...AACCG UCUCC...ACA-5'@LB@ | |@LB@ 58 50@LB@@LB@@LB@Energy -4.98 kcal/mol@LB@Hybridization Energy -9.02345 kcal/mol@LB@Unfolding Energy - mRNA 1.32881 kcal/mol@LB@Unfolding Energy - sRNA 2.71582 kcal/mol@LB@@LB@Position - mRNA 224 -- 230@LB@Position - sRNA 51 -- 57@LB@Position Seed - mRNA 224 -- 230@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 28 |
0.005242 |
0.6024 |
b0785 |
moaE |
-11.01 |
0.025514 |
211 -- 232 |
52 -- 74 |
molybdopterin synthase large subunit |
|
_____________210_____________________233\n_____________|_______________________|\n5'-AGA...AGAAA____A__________________GCCGU...CCU-3'\n______________CCAA_AUUGUUGUUGGUCCG_CA\n______________||||_||:|:|:||||:|||_||\n______________GGUU_UAGCGAUAACCGGGC_GU\n3'-UUU...UUACC____A_______________A__UUCUC...ACA-5'\n_____________|_______________________|\n_____________75______________________51\n |
216 -- 222 |
63 -- 69 |
-28.4518 kcal/mol |
6.10798 kcal/mol |
11.3304 kcal/mol |
210 233@LB@ | |@LB@5'-AGA...AGAAA A GCCGU...CCU-3'@LB@ CCAA AUUGUUGUUGGUCCG CA@LB@ |||| ||:|:|:||||:||| ||@LB@ GGUU UAGCGAUAACCGGGC GU@LB@3'-UUU...UUACC A A UUCUC...ACA-5'@LB@ | |@LB@ 75 51@LB@@LB@@LB@Energy -11.01 kcal/mol@LB@Hybridization Energy -28.4518 kcal/mol@LB@Unfolding Energy - mRNA 6.10798 kcal/mol@LB@Unfolding Energy - sRNA 11.3304 kcal/mol@LB@@LB@Position - mRNA 211 -- 232@LB@Position - sRNA 52 -- 74@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 63 -- 69@LB@ |
| 64 |
0.01382 |
0.6177 |
b3250 |
mreC |
-10.24 |
0.036759 |
206 -- 229 |
53 -- 75 |
cell wall structural complex MreBCD transmembrane component MreC |
|
_____________205_______________________230\n_____________|_________________________|\n5'-GAC...AUGAA______UUUUA__CG__________GCUAC...GGA-3'\n______________GCCAAU_____GC___UGGCCCGUC\n______________||||||_____||___|||||||||\n______________CGGUUA_____CG___ACCGGGCAG\n3'-UUU...UUUAC______UAG____AUA_________UUUCU...ACA-5'\n_____________|_________________________|\n_____________76________________________52\n |
223 -- 229 |
53 -- 59 |
-27.5071 kcal/mol |
5.94491 kcal/mol |
11.3228 kcal/mol |
205 230@LB@ | |@LB@5'-GAC...AUGAA UUUUA CG GCUAC...GGA-3'@LB@ GCCAAU GC UGGCCCGUC@LB@ |||||| || |||||||||@LB@ CGGUUA CG ACCGGGCAG@LB@3'-UUU...UUUAC UAG AUA UUUCU...ACA-5'@LB@ | |@LB@ 76 52@LB@@LB@@LB@Energy -10.24 kcal/mol@LB@Hybridization Energy -27.5071 kcal/mol@LB@Unfolding Energy - mRNA 5.94491 kcal/mol@LB@Unfolding Energy - sRNA 11.3228 kcal/mol@LB@@LB@Position - mRNA 206 -- 229@LB@Position - sRNA 53 -- 75@LB@Position Seed - mRNA 223 -- 229@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 78 |
0.01669 |
0.6177 |
b2764 |
cysJ |
-9.29 |
0.057302 |
85 -- 99 |
53 -- 70 |
sulfite reductase alpha subunit flavoprotein |
|
_____________84_________________100\n_____________|__________________|\n5'-UUC...UUAGU__________________UUUAA...UUG-3'\n______________UAUCGCUAU___CCCGUC\n______________|||||||||___||||||\n______________AUAGCGAUA___GGGCAG\n3'-UUU...CGGUU_________ACC______UUUCU...ACA-5'\n_____________|__________________|\n_____________71_________________52\n |
87 -- 93 |
62 -- 68 |
-22.2411 kcal/mol |
2.01357 kcal/mol |
10.9351 kcal/mol |
84 100@LB@ | |@LB@5'-UUC...UUAGU UUUAA...UUG-3'@LB@ UAUCGCUAU CCCGUC@LB@ ||||||||| ||||||@LB@ AUAGCGAUA GGGCAG@LB@3'-UUU...CGGUU ACC UUUCU...ACA-5'@LB@ | |@LB@ 71 52@LB@@LB@@LB@Energy -9.29 kcal/mol@LB@Hybridization Energy -22.2411 kcal/mol@LB@Unfolding Energy - mRNA 2.01357 kcal/mol@LB@Unfolding Energy - sRNA 10.9351 kcal/mol@LB@@LB@Position - mRNA 85 -- 99@LB@Position - sRNA 53 -- 70@LB@Position Seed - mRNA 87 -- 93@LB@Position Seed - sRNA 62 -- 68@LB@ |
| 122 |
0.02427 |
0.6177 |
b1116 |
lolC |
-7.56 |
0.127136 |
206 -- 233 |
55 -- 74 |
lipoprotein-releasing system transmembrane protein |
|
_____________205__________________________234\n_____________|____________________________|\n5'-GUA...AUGUA____CC_______CUAUUU_________CGUUA...GCA-3'\n______________CCAA__UGUCGCU______AUUGGCCUG\n______________||||__|:|||||______|||||||:|\n______________GGUU__AUAGCGA______UAACCGGGC\n3'-UUU...UUACC____________________________AGUUU...ACA-5'\n_____________|____________________________|\n_____________75___________________________54\n |
212 -- 218 |
64 -- 70 |
-24.394 kcal/mol |
5.52374 kcal/mol |
11.3119 kcal/mol |
205 234@LB@ | |@LB@5'-GUA...AUGUA CC CUAUUU CGUUA...GCA-3'@LB@ CCAA UGUCGCU AUUGGCCUG@LB@ |||| |:||||| |||||||:|@LB@ GGUU AUAGCGA UAACCGGGC@LB@3'-UUU...UUACC AGUUU...ACA-5'@LB@ | |@LB@ 75 54@LB@@LB@@LB@Energy -7.56 kcal/mol@LB@Hybridization Energy -24.394 kcal/mol@LB@Unfolding Energy - mRNA 5.52374 kcal/mol@LB@Unfolding Energy - sRNA 11.3119 kcal/mol@LB@@LB@Position - mRNA 206 -- 233@LB@Position - sRNA 55 -- 74@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 64 -- 70@LB@ |
| 136 |
0.02642 |
0.6177 |
b4036 |
lamB |
-8.19 |
0.095416 |
26 -- 54 |
55 -- 84 |
maltose outer membrane porin (maltoporin) |
|
_____________25_____________________________55\n_____________|______________________________|\n5'-CGC...GGUAG_____________CAU_______C______CCGCC...GUU-3'\n______________AAGAAGGU_GCCA___UCGCUAU_GGCCUG\n______________||:||::|_||||___|||||||_||||:|\n______________UUUUUUUA_CGGU___AGCGAUA_CCGGGC\n___________3'-________C____UAU_______A______AGUUU...ACA-5'\n______________|_____________________________|\n______________84____________________________54\n |
41 -- 47 |
62 -- 68 |
-32.2235 kcal/mol |
10.7352 kcal/mol |
13.2983 kcal/mol |
25 55@LB@ | |@LB@5'-CGC...GGUAG CAU C CCGCC...GUU-3'@LB@ AAGAAGGU GCCA UCGCUAU GGCCUG@LB@ ||:||::| |||| ||||||| ||||:|@LB@ UUUUUUUA CGGU AGCGAUA CCGGGC@LB@ 3'- C UAU A AGUUU...ACA-5'@LB@ | |@LB@ 84 54@LB@@LB@@LB@Energy -8.19 kcal/mol@LB@Hybridization Energy -32.2235 kcal/mol@LB@Unfolding Energy - mRNA 10.7352 kcal/mol@LB@Unfolding Energy - sRNA 13.2983 kcal/mol@LB@@LB@Position - mRNA 26 -- 54@LB@Position - sRNA 55 -- 84@LB@Position Seed - mRNA 41 -- 47@LB@Position Seed - sRNA 62 -- 68@LB@ |
