111 |
0.01125 |
0.3104 |
b0102 |
zapD |
-10.07 |
0.117779 |
99 -- 113 |
8 -- 22 |
FtsZ stabilizer |
|
_____________98______________114\n_____________|_______________|\n5'-ACC...GUCAU_________CG____ACCGG...CCA-3'\n______________UGAUAAUAA__GCGC\n______________||||||:||__||||\n______________ACUAUUGUU__CGCG\n3'-UUU...CUACU_________UA____CAGAAAG-5'\n_____________|_______________|\n_____________23______________7\n |
101 -- 107 |
14 -- 20 |
-15.8633 kcal/mol |
4.55182 kcal/mol |
1.23838 kcal/mol |
98 114@LB@ | |@LB@5'-ACC...GUCAU CG ACCGG...CCA-3'@LB@ UGAUAAUAA GCGC@LB@ ||||||:|| ||||@LB@ ACUAUUGUU CGCG@LB@3'-UUU...CUACU UA CAGAAAG-5'@LB@ | |@LB@ 23 7@LB@@LB@@LB@Energy -10.07 kcal/mol@LB@Hybridization Energy -15.8633 kcal/mol@LB@Unfolding Energy - mRNA 4.55182 kcal/mol@LB@Unfolding Energy - sRNA 1.23838 kcal/mol@LB@@LB@Position - mRNA 99 -- 113@LB@Position - sRNA 8 -- 22@LB@Position Seed - mRNA 101 -- 107@LB@Position Seed - sRNA 14 -- 20@LB@ |
112 |
0.01125 |
0.3104 |
b2515 |
ispG |
-10.24 |
0.110168 |
132 -- 140 |
4 -- 12 |
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
|
_____________131_______141\n_____________|_________|\n5'-CGU...CAGGU_________GACCC...UGA-3'\n______________UGCGCGUCU\n______________|||||||||\n______________ACGCGCAGA\n3'-UUU...UGUUU_________AAG-5'\n_____________|_________|\n_____________13________3\n |
134 -- 140 |
4 -- 10 |
-16.4542 kcal/mol |
5.04928 kcal/mol |
1.16019 kcal/mol |
131 141@LB@ | |@LB@5'-CGU...CAGGU GACCC...UGA-3'@LB@ UGCGCGUCU@LB@ |||||||||@LB@ ACGCGCAGA@LB@3'-UUU...UGUUU AAG-5'@LB@ | |@LB@ 13 3@LB@@LB@@LB@Energy -10.24 kcal/mol@LB@Hybridization Energy -16.4542 kcal/mol@LB@Unfolding Energy - mRNA 5.04928 kcal/mol@LB@Unfolding Energy - sRNA 1.16019 kcal/mol@LB@@LB@Position - mRNA 132 -- 140@LB@Position - sRNA 4 -- 12@LB@Position Seed - mRNA 134 -- 140@LB@Position Seed - sRNA 4 -- 10@LB@ |
113 |
0.01159 |
0.3104 |
b1279 |
yciS |
-9.20 |
0.164515 |
90 -- 101 |
6 -- 18 |
DUF1049 family inner membrane protein function unknown |
|
_____________89____________102\n_____________|_____________|\n5'-ACC...UCAUC_____________GGAUG...UGU-3'\n______________AAC_AAUGCGUGU\n______________|||_||||||:||\n______________UUG_UUACGCGCA\n3'-UUU...UACUA___U_________GAAAG-5'\n_____________|_____________|\n_____________19____________5\n |
95 -- 101 |
6 -- 12 |
-13.4585 kcal/mol |
3.04139 kcal/mol |
1.21878 kcal/mol |
89 102@LB@ | |@LB@5'-ACC...UCAUC GGAUG...UGU-3'@LB@ AAC AAUGCGUGU@LB@ ||| ||||||:||@LB@ UUG UUACGCGCA@LB@3'-UUU...UACUA U GAAAG-5'@LB@ | |@LB@ 19 5@LB@@LB@@LB@Energy -9.20 kcal/mol@LB@Hybridization Energy -13.4585 kcal/mol@LB@Unfolding Energy - mRNA 3.04139 kcal/mol@LB@Unfolding Energy - sRNA 1.21878 kcal/mol@LB@@LB@Position - mRNA 90 -- 101@LB@Position - sRNA 6 -- 18@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 6 -- 12@LB@ |
114 |
0.01161 |
0.3104 |
b3392 |
hofP |
-8.60 |
0.204995 |
138 -- 147 |
1 -- 11 |
DNA catabolic protein |
|
_____________137_________148\n_____________|___________|\n5'-ACU...CGUGA___________GUUAA...GCG-3'\n______________GC_CGUUUUUC\n______________||_|||:||||\n______________CG_GCAGAAAG\n3'-UUU...GUUUA__C________-5'\n_____________|__________|\n_____________12_________1\n |
141 -- 147 |
1 -- 7 |
-12.6405 kcal/mol |
2.86562 kcal/mol |
1.17076 kcal/mol |
137 148@LB@ | |@LB@5'-ACU...CGUGA GUUAA...GCG-3'@LB@ GC CGUUUUUC@LB@ || |||:||||@LB@ CG GCAGAAAG@LB@3'-UUU...GUUUA C -5'@LB@ | |@LB@ 12 1@LB@@LB@@LB@Energy -8.60 kcal/mol@LB@Hybridization Energy -12.6405 kcal/mol@LB@Unfolding Energy - mRNA 2.86562 kcal/mol@LB@Unfolding Energy - sRNA 1.17076 kcal/mol@LB@@LB@Position - mRNA 138 -- 147@LB@Position - sRNA 1 -- 11@LB@Position Seed - mRNA 141 -- 147@LB@Position Seed - sRNA 1 -- 7@LB@ |
115 |
0.01182 |
0.3104 |
b3367 |
nirC |
-10.39 |
0.104055 |
218 -- 233 |
4 -- 19 |
nitrite transporter |
|
_____________217______________234\n_____________|________________|\n5'-AUG...ACUAU_____________G__AACGC...UGG-3'\n______________UAAUAAGUGUGCG_CU\n______________|||:||:||:|||_||\n______________AUUGUUUACGCGC_GA\n3'-UUU...CUACU_____________A__AAG-5'\n_____________|________________|\n_____________20_______________3\n |
224 -- 230 |
7 -- 13 |
-17.3607 kcal/mol |
5.72929 kcal/mol |
1.2406 kcal/mol |
217 234@LB@ | |@LB@5'-AUG...ACUAU G AACGC...UGG-3'@LB@ UAAUAAGUGUGCG CU@LB@ |||:||:||:||| ||@LB@ AUUGUUUACGCGC GA@LB@3'-UUU...CUACU A AAG-5'@LB@ | |@LB@ 20 3@LB@@LB@@LB@Energy -10.39 kcal/mol@LB@Hybridization Energy -17.3607 kcal/mol@LB@Unfolding Energy - mRNA 5.72929 kcal/mol@LB@Unfolding Energy - sRNA 1.2406 kcal/mol@LB@@LB@Position - mRNA 218 -- 233@LB@Position - sRNA 4 -- 19@LB@Position Seed - mRNA 224 -- 230@LB@Position Seed - sRNA 7 -- 13@LB@ |
116 |
0.01184 |
0.3104 |
b1218 |
chaC |
-12.45 |
0.045440 |
10 -- 29 |
8 -- 30 |
cation transport regulator |
|
_____________9_______________________30\n_____________|_______________________|\n5'-AUA...GCCAA_______________________AUAAA...CGC-3'\n______________AGGG__GAUGAUGAUAAAUG_GC\n______________||||__||||||:|:|||||_||\n______________UCCC__CUACUAUUGUUUAC_CG\n3'-UUU...UUAAG____UA______________G__CAGAAAG-5'\n_____________|_______________________|\n_____________31______________________7\n |
21 -- 27 |
11 -- 17 |
-25.0616 kcal/mol |
5.19055 kcal/mol |
7.41684 kcal/mol |
9 30@LB@ | |@LB@5'-AUA...GCCAA AUAAA...CGC-3'@LB@ AGGG GAUGAUGAUAAAUG GC@LB@ |||| ||||||:|:||||| ||@LB@ UCCC CUACUAUUGUUUAC CG@LB@3'-UUU...UUAAG UA G CAGAAAG-5'@LB@ | |@LB@ 31 7@LB@@LB@@LB@Energy -12.45 kcal/mol@LB@Hybridization Energy -25.0616 kcal/mol@LB@Unfolding Energy - mRNA 5.19055 kcal/mol@LB@Unfolding Energy - sRNA 7.41684 kcal/mol@LB@@LB@Position - mRNA 10 -- 29@LB@Position - sRNA 8 -- 30@LB@Position Seed - mRNA 21 -- 27@LB@Position Seed - sRNA 11 -- 17@LB@ |
117 |
0.01191 |
0.3104 |
b2137 |
yohF |
-11.08 |
0.079147 |
231 -- 259 |
5 -- 35 |
putative oxidoreductase |
|
_____________230_____________________________260\n_____________|_______________________________|\n5'-UAA...CCUCC___________C____CAAA___________AUUAC...GGC-3'\n______________GAUUCGGGGAU___GG____GAGUGCGCGUU\n______________:||||:|||||___|:____:|:|||||||:\n______________UUAAGUCCCUA___CU____UUUACGCGCAG\n3'-UUU...GAGAC___________CUA__AUUG___________AAAG-5'\n_____________|_______________________________|\n_____________36______________________________4\n |
253 -- 259 |
5 -- 11 |
-31.497 kcal/mol |
11.2631 kcal/mol |
9.15134 kcal/mol |
230 260@LB@ | |@LB@5'-UAA...CCUCC C CAAA AUUAC...GGC-3'@LB@ GAUUCGGGGAU GG GAGUGCGCGUU@LB@ :||||:||||| |: :|:|||||||:@LB@ UUAAGUCCCUA CU UUUACGCGCAG@LB@3'-UUU...GAGAC CUA AUUG AAAG-5'@LB@ | |@LB@ 36 4@LB@@LB@@LB@Energy -11.08 kcal/mol@LB@Hybridization Energy -31.497 kcal/mol@LB@Unfolding Energy - mRNA 11.2631 kcal/mol@LB@Unfolding Energy - sRNA 9.15134 kcal/mol@LB@@LB@Position - mRNA 231 -- 259@LB@Position - sRNA 5 -- 35@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 5 -- 11@LB@ |
118 |
0.01199 |
0.3104 |
b2573 |
rpoE |
-10.72 |
0.091300 |
77 -- 87 |
8 -- 18 |
RNA polymerase sigma E factor |
|
_____________76__________88\n_____________|___________|\n5'-ACA...ACAAA___________UACGG...UGG-3'\n______________AACAGAUGCGU\n______________||||:|||||:\n______________UUGUUUACGCG\n3'-UUU...UACUA___________CAGAAAG-5'\n_____________|___________|\n_____________19__________7\n |
81 -- 87 |
8 -- 14 |
-15.0531 kcal/mol |
3.12642 kcal/mol |
1.20363 kcal/mol |
76 88@LB@ | |@LB@5'-ACA...ACAAA UACGG...UGG-3'@LB@ AACAGAUGCGU@LB@ ||||:|||||:@LB@ UUGUUUACGCG@LB@3'-UUU...UACUA CAGAAAG-5'@LB@ | |@LB@ 19 7@LB@@LB@@LB@Energy -10.72 kcal/mol@LB@Hybridization Energy -15.0531 kcal/mol@LB@Unfolding Energy - mRNA 3.12642 kcal/mol@LB@Unfolding Energy - sRNA 1.20363 kcal/mol@LB@@LB@Position - mRNA 77 -- 87@LB@Position - sRNA 8 -- 18@LB@Position Seed - mRNA 81 -- 87@LB@Position Seed - sRNA 8 -- 14@LB@ |
119 |
0.01215 |
0.3104 |
b3691 |
dgoT |
-8.17 |
0.239341 |
58 -- 68 |
8 -- 21 |
D-galactonate transporter |
|
_____________57_____________69\n_____________|______________|\n5'-GUG...AUGAA______________AGCAG...CCA-3'\n______________GAUAACA___GCGU\n______________|||||||___|||:\n______________CUAUUGU___CGCG\n3'-UUU...UACUA_______UUA____CAGAAAG-5'\n_____________|______________|\n_____________22_____________7\n |
58 -- 64 |
15 -- 21 |
-12.2033 kcal/mol |
2.79285 kcal/mol |
1.23638 kcal/mol |
57 69@LB@ | |@LB@5'-GUG...AUGAA AGCAG...CCA-3'@LB@ GAUAACA GCGU@LB@ ||||||| |||:@LB@ CUAUUGU CGCG@LB@3'-UUU...UACUA UUA CAGAAAG-5'@LB@ | |@LB@ 22 7@LB@@LB@@LB@Energy -8.17 kcal/mol@LB@Hybridization Energy -12.2033 kcal/mol@LB@Unfolding Energy - mRNA 2.79285 kcal/mol@LB@Unfolding Energy - sRNA 1.23638 kcal/mol@LB@@LB@Position - mRNA 58 -- 68@LB@Position - sRNA 8 -- 21@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 15 -- 21@LB@ |
120 |
0.01222 |
0.3104 |
b0916 |
ycaQ |
-9.32 |
0.156865 |
225 -- 243 |
1 -- 17 |
DUF1006 family protein with C-terminal wHTH domain |
|
_____________224_________________244\n_____________|___________________|\n5'-UGG...CCCUU__U_________AAUC___ACCUU...AUA-3'\n______________GC_GAUGCGCGU____UUC\n______________:|_:||||||||____|||\n______________UG_UUACGCGCA____AAG\n3'-UUU...ACUAU__U_________GA_____-5'\n_____________|__________________|\n_____________18_________________1\n |
230 -- 236 |
6 -- 12 |
-16.5738 kcal/mol |
6.00902 kcal/mol |
1.23994 kcal/mol |
224 244@LB@ | |@LB@5'-UGG...CCCUU U AAUC ACCUU...AUA-3'@LB@ GC GAUGCGCGU UUC@LB@ :| :|||||||| |||@LB@ UG UUACGCGCA AAG@LB@3'-UUU...ACUAU U GA -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -9.32 kcal/mol@LB@Hybridization Energy -16.5738 kcal/mol@LB@Unfolding Energy - mRNA 6.00902 kcal/mol@LB@Unfolding Energy - sRNA 1.23994 kcal/mol@LB@@LB@Position - mRNA 225 -- 243@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 230 -- 236@LB@Position Seed - sRNA 6 -- 12@LB@ |