| 93 |
0.004161 |
0.1538 |
b4221 |
tamB |
-11.98 |
0.104509 |
154 -- 185 |
44 -- 78 |
translocation and assembly module for autotransporter export inner membrane subunit |
|
_____________153__________________________________186\n_____________|____________________________________|\n5'-ACC...CGGAU______GA____________ACA________A____UCUGG...AUC-3'\n______________AAAGAC___ACACGG__GUU____GUUUUAC_UCGG\n______________||||||___||||:|__:||____||||:||_||:|\n______________UUUCUG___UGUGUC__UAA____CAAAGUG_AGUC\n3'-UUU...ACCCG______AUG______GU___GCAA____________CCCUA...GCA-5'\n_____________|____________________________________|\n_____________79___________________________________43\n |
174 -- 180 |
48 -- 54 |
-22.2219 kcal/mol |
6.10136 kcal/mol |
4.13875 kcal/mol |
153 186@LB@ | |@LB@5'-ACC...CGGAU GA ACA A UCUGG...AUC-3'@LB@ AAAGAC ACACGG GUU GUUUUAC UCGG@LB@ |||||| ||||:| :|| ||||:|| ||:|@LB@ UUUCUG UGUGUC UAA CAAAGUG AGUC@LB@3'-UUU...ACCCG AUG GU GCAA CCCUA...GCA-5'@LB@ | |@LB@ 79 43@LB@@LB@@LB@Energy -11.98 kcal/mol@LB@Hybridization Energy -22.2219 kcal/mol@LB@Unfolding Energy - mRNA 6.10136 kcal/mol@LB@Unfolding Energy - sRNA 4.13875 kcal/mol@LB@@LB@Position - mRNA 154 -- 185@LB@Position - sRNA 44 -- 78@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 104 |
0.004609 |
0.1538 |
b3405 |
ompR |
-12.19 |
0.094658 |
154 -- 190 |
42 -- 77 |
response regulator in two-component regulatory system with EnvZ |
|
_____________153___________________________________191\n_____________|_____________________________________|\n5'-AAU...UUUUU____A_______UUA___A______CGAAC___U___AGUAC...GCG-3'\n______________AAGA_UACACGC___CAA_UUGUUG_____CUU_GGG\n______________||||_|||||:|___|||_|:||||_____||:_|||\n______________UUCU_AUGUGUG___GUU_AGCAAC_____GAG_CCC\n3'-UUU...CCCGU____G_______UC____A______AAAGU___U___CUAAA...GCA-5'\n_____________|_____________________________________|\n_____________78____________________________________41\n |
159 -- 165 |
66 -- 72 |
-25.6517 kcal/mol |
8.69679 kcal/mol |
4.7648 kcal/mol |
153 191@LB@ | |@LB@5'-AAU...UUUUU A UUA A CGAAC U AGUAC...GCG-3'@LB@ AAGA UACACGC CAA UUGUUG CUU GGG@LB@ |||| |||||:| ||| |:|||| ||: |||@LB@ UUCU AUGUGUG GUU AGCAAC GAG CCC@LB@3'-UUU...CCCGU G UC A AAAGU U CUAAA...GCA-5'@LB@ | |@LB@ 78 41@LB@@LB@@LB@Energy -12.19 kcal/mol@LB@Hybridization Energy -25.6517 kcal/mol@LB@Unfolding Energy - mRNA 8.69679 kcal/mol@LB@Unfolding Energy - sRNA 4.7648 kcal/mol@LB@@LB@Position - mRNA 154 -- 190@LB@Position - sRNA 42 -- 77@LB@Position Seed - mRNA 159 -- 165@LB@Position Seed - sRNA 66 -- 72@LB@ |
| 1 |
5.015e-10 |
1.765e-06 |
b0680 |
glnS |
-23.71 |
0.000006 |
155 -- 198 |
34 -- 77 |
glutamyl-tRNA synthetase |
|
_____________154___________________________________________199\n_____________|_____________________________________________|\n5'-UGC...CUUAU_____C______C__U__A________A_____U_A___A_____CGAUG...CGC-3'\n______________AAGAU_AUACGC_GU_AU_CGUUGUUU_CGCUU_G_GGA__UCCA\n______________||||:_|:||:|_|:_||_||||||||_|:||:_|_|||__||||\n______________UUCUG_UGUGUG_CG_UA_GCAACAAA_GUGAG_C_CCU__AGGU\n3'-UUU...CCCGU_____A______U__U__A______________U_C___AA____ACGAA...GCA-5'\n_____________|_____________________________________________|\n_____________78____________________________________________33\n |
175 -- 181 |
51 -- 57 |
-34.8912 kcal/mol |
6.37021 kcal/mol |
4.81601 kcal/mol |
154 199@LB@ | |@LB@5'-UGC...CUUAU C C U A A U A A CGAUG...CGC-3'@LB@ AAGAU AUACGC GU AU CGUUGUUU CGCUU G GGA UCCA@LB@ ||||: |:||:| |: || |||||||| |:||: | ||| ||||@LB@ UUCUG UGUGUG CG UA GCAACAAA GUGAG C CCU AGGU@LB@3'-UUU...CCCGU A U U A U C AA ACGAA...GCA-5'@LB@ | |@LB@ 78 33@LB@@LB@@LB@Energy -23.71 kcal/mol@LB@Hybridization Energy -34.8912 kcal/mol@LB@Unfolding Energy - mRNA 6.37021 kcal/mol@LB@Unfolding Energy - sRNA 4.81601 kcal/mol@LB@@LB@Position - mRNA 155 -- 198@LB@Position - sRNA 34 -- 77@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 80 |
0.003376 |
0.1462 |
b3098 |
yqjD |
-10.12 |
0.233597 |
155 -- 204 |
31 -- 75 |
membrane-anchored ribosome-binding protein |
|
_____________154_________________________________________________205\n_____________|___________________________________________________|\n5'-UCA...CGCGC______UA__UCA____A___CACUAC_______CCU__A__AAA______CGAAA...AAG-3'\n______________GACUAC__AC___CAAU__GU______UUACUCA___GG_GA___CUAUGU\n______________||||||__||___||||__||______|:|||||___||_||___|:|||:\n______________CUGAUG__UG___GUUA__CA______AGUGAGU___CC_CU___GGUACG\n3'-UUU...CGUUU______UG__UC_____AG__ACAA_________C_______AAA______AAUAU...GCA-5'\n_____________|___________________________________________________|\n_____________76__________________________________________________30\n |
181 -- 187 |
45 -- 51 |
-24.4421 kcal/mol |
7.05998 kcal/mol |
7.26183 kcal/mol |
154 205@LB@ | |@LB@5'-UCA...CGCGC UA UCA A CACUAC CCU A AAA CGAAA...AAG-3'@LB@ GACUAC AC CAAU GU UUACUCA GG GA CUAUGU@LB@ |||||| || |||| || |:||||| || || |:|||:@LB@ CUGAUG UG GUUA CA AGUGAGU CC CU GGUACG@LB@3'-UUU...CGUUU UG UC AG ACAA C AAA AAUAU...GCA-5'@LB@ | |@LB@ 76 30@LB@@LB@@LB@Energy -10.12 kcal/mol@LB@Hybridization Energy -24.4421 kcal/mol@LB@Unfolding Energy - mRNA 7.05998 kcal/mol@LB@Unfolding Energy - sRNA 7.26183 kcal/mol@LB@@LB@Position - mRNA 155 -- 204@LB@Position - sRNA 31 -- 75@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 98 |
0.004518 |
0.1538 |
b2193 |
narP |
-14.47 |
0.028569 |
155 -- 204 |
31 -- 74 |
response regulator in two-component regulatory system with NarQ |
|
_____________154________________________________________________205\n_____________|__________________________________________________|\n5'-UUG...CCAAC_______UCAA___UAA______UAAUAAAAC______A__CUA______CUGAA...AAG-3'\n______________GCUACGC____ACA___UGAUUC_________CUCAGG_GA___CUAUGC\n______________:||||:|____|||___::||||_________||||||_||___|:||||\n______________UGAUGUG____UGU___GUUAAG_________GAGUCC_CU___GGUACG\n3'-UUU...GUUUC______________C________CAACAAAGU______C__AAA______AAUAU...GCA-5'\n_____________|__________________________________________________|\n_____________75_________________________________________________30\n |
155 -- 161 |
68 -- 74 |
-27.903 kcal/mol |
6.17297 kcal/mol |
7.26183 kcal/mol |
154 205@LB@ | |@LB@5'-UUG...CCAAC UCAA UAA UAAUAAAAC A CUA CUGAA...AAG-3'@LB@ GCUACGC ACA UGAUUC CUCAGG GA CUAUGC@LB@ :||||:| ||| ::|||| |||||| || |:||||@LB@ UGAUGUG UGU GUUAAG GAGUCC CU GGUACG@LB@3'-UUU...GUUUC C CAACAAAGU C AAA AAUAU...GCA-5'@LB@ | |@LB@ 75 30@LB@@LB@@LB@Energy -14.47 kcal/mol@LB@Hybridization Energy -27.903 kcal/mol@LB@Unfolding Energy - mRNA 6.17297 kcal/mol@LB@Unfolding Energy - sRNA 7.26183 kcal/mol@LB@@LB@Position - mRNA 155 -- 204@LB@Position - sRNA 31 -- 74@LB@Position Seed - mRNA 155 -- 161@LB@Position Seed - sRNA 68 -- 74@LB@ |
| 101 |
0.004534 |
0.1538 |
b2079 |
baeR |
-10.16 |
0.230535 |
155 -- 191 |
34 -- 71 |
response regulator in two-component regulatory system with BaeS |
|
_____________154_______________________________________192\n_____________|_________________________________________|\n5'-CAG...GGUAA___U________A_____AC______G_AAC______UA__GAGAG...CGA-3'\n______________GCA_UACAGUAG___GUU____CGCU_G___GGGAUU__CA\n______________:||_:||||:|:___|||____|:||_:___||||||__||\n______________UGU_GUGUCGUU___CAA____GUGA_U___CCCUAA__GU\n3'-UUU...UCUGA____________AAG___CAAA____G_C________AG__ACGAA...GCA-5'\n_____________|_________________________________________|\n_____________72________________________________________33\n |
160 -- 166 |
61 -- 67 |
-23.4603 kcal/mol |
8.51419 kcal/mol |
4.79237 kcal/mol |
154 192@LB@ | |@LB@5'-CAG...GGUAA U A AC G AAC UA GAGAG...CGA-3'@LB@ GCA UACAGUAG GUU CGCU G GGGAUU CA@LB@ :|| :||||:|: ||| |:|| : |||||| ||@LB@ UGU GUGUCGUU CAA GUGA U CCCUAA GU@LB@3'-UUU...UCUGA AAG CAAA G C AG ACGAA...GCA-5'@LB@ | |@LB@ 72 33@LB@@LB@@LB@Energy -10.16 kcal/mol@LB@Hybridization Energy -23.4603 kcal/mol@LB@Unfolding Energy - mRNA 8.51419 kcal/mol@LB@Unfolding Energy - sRNA 4.79237 kcal/mol@LB@@LB@Position - mRNA 155 -- 191@LB@Position - sRNA 34 -- 71@LB@Position Seed - mRNA 160 -- 166@LB@Position Seed - sRNA 61 -- 67@LB@ |
| 3 |
3.356e-06 |
0.003937 |
b3724 |
phoU |
-15.84 |
0.012477 |
157 -- 192 |
43 -- 78 |
negative regulator of PhoR/PhoB two-component regulator |
|
_____________156____________________________________193\n_____________|______________________________________|\n5'-ACC...AAACA______________C_________ACGG__G_______AGUGC...AGC-3'\n______________GAAGACUACAU_CA_CGG_UCGUU____UU_AUUCAGG\n______________:|||||||||:_||_|::_|||||____||_|:|||||\n______________UUUCUGAUGUG_GU_GUU_AGCAA____AA_UGAGUCC\n3'-UUU...ACCCG___________U__C___A_____CA____G_______CCUAA...GCA-5'\n_____________|______________________________________|\n_____________79_____________________________________42\n |
186 -- 192 |
43 -- 49 |
-29.823 kcal/mol |
9.63349 kcal/mol |
4.35315 kcal/mol |
156 193@LB@ | |@LB@5'-ACC...AAACA C ACGG G AGUGC...AGC-3'@LB@ GAAGACUACAU CA CGG UCGUU UU AUUCAGG@LB@ :|||||||||: || |:: ||||| || |:|||||@LB@ UUUCUGAUGUG GU GUU AGCAA AA UGAGUCC@LB@3'-UUU...ACCCG U C A CA G CCUAA...GCA-5'@LB@ | |@LB@ 79 42@LB@@LB@@LB@Energy -15.84 kcal/mol@LB@Hybridization Energy -29.823 kcal/mol@LB@Unfolding Energy - mRNA 9.63349 kcal/mol@LB@Unfolding Energy - sRNA 4.35315 kcal/mol@LB@@LB@Position - mRNA 157 -- 192@LB@Position - sRNA 43 -- 78@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 74 |
0.003066 |
0.1452 |
b0467 |
priC |
-11.71 |
0.118543 |
157 -- 193 |
43 -- 75 |
primosomal replication protein N'' |
|
_____________156___________________________________194\n_____________|_____________________________________|\n5'-GGG...AGAGU______UUUA_____A_____AUCAU_______G___UCUUA...GUU-3'\n______________GGCUAC____GCAUA_CAAUU_____UUUCAUU_AGG\n______________|:||||____:||:|_|||||_____|||||:|_|||\n______________CUGAUG____UGUGU_GUUAA_____AAAGUGA_UCC\n3'-UUU...CGUUU_______________C_____GCAAC_______G___CCUAA...GCA-5'\n_____________|_____________________________________|\n_____________76____________________________________42\n |
183 -- 189 |
47 -- 53 |
-24.815 kcal/mol |
8.75149 kcal/mol |
4.35266 kcal/mol |
156 194@LB@ | |@LB@5'-GGG...AGAGU UUUA A AUCAU G UCUUA...GUU-3'@LB@ GGCUAC GCAUA CAAUU UUUCAUU AGG@LB@ |:|||| :||:| ||||| |||||:| |||@LB@ CUGAUG UGUGU GUUAA AAAGUGA UCC@LB@3'-UUU...CGUUU C GCAAC G CCUAA...GCA-5'@LB@ | |@LB@ 76 42@LB@@LB@@LB@Energy -11.71 kcal/mol@LB@Hybridization Energy -24.815 kcal/mol@LB@Unfolding Energy - mRNA 8.75149 kcal/mol@LB@Unfolding Energy - sRNA 4.35266 kcal/mol@LB@@LB@Position - mRNA 157 -- 193@LB@Position - sRNA 43 -- 75@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 84 |
0.003656 |
0.1509 |
b0827 |
moeA |
-7.84 |
0.503176 |
157 -- 203 |
32 -- 75 |
molybdopterin molybdenumtransferase; molybdopterin biosynthesis protein |
|
_____________156_______________________________________________204\n_____________|_________________________________________________|\n5'-AUU...UUUCU_______AUA___A______AUU___CC____G____A_U_________GAAUU...UAC-3'\n______________GAC_AUA___GGC_AAUUCG___UUG__UC_C_CAGG_G_GUUUUCAUG\n______________|||_|:|___:||_||||||___|||__||_|_||||_|_:|||:||||\n______________CUG_UGU___UCG_UUAAGC___AAC__AG_G_GUCC_C_UAAAGGUAC\n3'-UUU...CGUUU___A___GUG________________AA__U_A______C_________GAAUA...GCA-5'\n_____________|_________________________________________________|\n_____________76________________________________________________31\n |
197 -- 203 |
32 -- 38 |
-28.9008 kcal/mol |
13.8106 kcal/mol |
7.24967 kcal/mol |
156 204@LB@ | |@LB@5'-AUU...UUUCU AUA A AUU CC G A U GAAUU...UAC-3'@LB@ GAC AUA GGC AAUUCG UUG UC C CAGG G GUUUUCAUG@LB@ ||| |:| :|| |||||| ||| || | |||| | :|||:||||@LB@ CUG UGU UCG UUAAGC AAC AG G GUCC C UAAAGGUAC@LB@3'-UUU...CGUUU A GUG AA U A C GAAUA...GCA-5'@LB@ | |@LB@ 76 31@LB@@LB@@LB@Energy -7.84 kcal/mol@LB@Hybridization Energy -28.9008 kcal/mol@LB@Unfolding Energy - mRNA 13.8106 kcal/mol@LB@Unfolding Energy - sRNA 7.24967 kcal/mol@LB@@LB@Position - mRNA 157 -- 203@LB@Position - sRNA 32 -- 75@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 36 |
0.0006028 |
0.05893 |
b2398 |
yfeC |
-12.67 |
0.075056 |
159 -- 178 |
42 -- 76 |
DUF1323 family putative DNA-binding protein |
b2399 |
_____________158_________________________________179\n_____________|___________________________________|\n5'-AUA...CUAAU____C______________________________AAUUG...GCG-3'\n______________AGAC__CACAUA______________CAUUCAGGG\n______________||||__||||:|______________||:||||||\n______________UCUG__GUGUGU______________GUGAGUCCC\n3'-UUU...CCGUU____AU______CGUUAAGCAACAAA_________CUAAA...GCA-5'\n_____________|___________________________________|\n_____________77__________________________________41\n |
172 -- 178 |
42 -- 48 |
-21.7854 kcal/mol |
4.35612 kcal/mol |
4.76453 kcal/mol |
158 179@LB@ | |@LB@5'-AUA...CUAAU C AAUUG...GCG-3'@LB@ AGAC CACAUA CAUUCAGGG@LB@ |||| ||||:| ||:||||||@LB@ UCUG GUGUGU GUGAGUCCC@LB@3'-UUU...CCGUU AU CGUUAAGCAACAAA CUAAA...GCA-5'@LB@ | |@LB@ 77 41@LB@@LB@@LB@Energy -12.67 kcal/mol@LB@Hybridization Energy -21.7854 kcal/mol@LB@Unfolding Energy - mRNA 4.35612 kcal/mol@LB@Unfolding Energy - sRNA 4.76453 kcal/mol@LB@@LB@Position - mRNA 159 -- 178@LB@Position - sRNA 42 -- 76@LB@Position Seed - mRNA 172 -- 178@LB@Position Seed - sRNA 42 -- 48@LB@ |
