126 |
0.00562 |
0.157 |
b3017 |
ftsP |
-15.30 |
0.017476 |
190 -- 242 |
38 -- 84 |
septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts) |
|
_____________189____________________________________________________243\n_____________|______________________________________________________|\n5'-GAC...UUUAC____A_____U__GU___U____CGG____CAG________GGCAUC_______GCACU...CGC-3'\n______________AUGG_GCAAA_AU__CAC_CAGU____CGU___UUCAUUCA______GGGGAUU\n______________||||_|||||_|:__|||_|||:____|||___||||:|||______|||||||\n______________UACC_CGUUU_UG__GUG_GUCG____GCA___AAGUGAGU______CCCCUAA\n3'-UUU...CCCUC__________C__AU___U____UUAA___ACA_____________________AGGUA...GCA-5'\n_____________|______________________________________________________|\n_____________85_____________________________________________________37\n |
236 -- 242 |
38 -- 44 |
-40.4092 kcal/mol |
11.1124 kcal/mol |
13.9994 kcal/mol |
189 243@LB@ | |@LB@5'-GAC...UUUAC A U GU U CGG CAG GGCAUC GCACU...CGC-3'@LB@ AUGG GCAAA AU CAC CAGU CGU UUCAUUCA GGGGAUU@LB@ |||| ||||| |: ||| |||: ||| ||||:||| |||||||@LB@ UACC CGUUU UG GUG GUCG GCA AAGUGAGU CCCCUAA@LB@3'-UUU...CCCUC C AU U UUAA ACA AGGUA...GCA-5'@LB@ | |@LB@ 85 37@LB@@LB@@LB@Energy -15.30 kcal/mol@LB@Hybridization Energy -40.4092 kcal/mol@LB@Unfolding Energy - mRNA 11.1124 kcal/mol@LB@Unfolding Energy - sRNA 13.9994 kcal/mol@LB@@LB@Position - mRNA 190 -- 242@LB@Position - sRNA 38 -- 84@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 38 -- 44@LB@ |
26 |
0.0002514 |
0.03403 |
b4551 |
yheV |
-11.83 |
0.112444 |
191 -- 229 |
42 -- 77 |
DUF2387 family putative metal-binding protein |
|
_____________190_____________________________________230\n_____________|_______________________________________|\n5'-AUC...GAGUA____G__A_G________C__AAAAC________GC___CGCAA...UUG-3'\n______________GAGG_UA_A_AUGGCAAU_CG_____GUUUUAUU__GGG\n______________:||:_||_|_|::|||||_||_____||||:|:|__|||\n______________UUCU_AU_U_UGUCGUUA_GC_____CAAAGUGA__CCC\n3'-UUU...CCCGU____G__G_G________A__AA___________GU___CUAAA...GCA-5'\n_____________|_______________________________________|\n_____________78______________________________________41\n |
217 -- 223 |
48 -- 54 |
-24.6454 kcal/mol |
8.05545 kcal/mol |
4.7648 kcal/mol |
190 230@LB@ | |@LB@5'-AUC...GAGUA G A G C AAAAC GC CGCAA...UUG-3'@LB@ GAGG UA A AUGGCAAU CG GUUUUAUU GGG@LB@ :||: || | |::||||| || ||||:|:| |||@LB@ UUCU AU U UGUCGUUA GC CAAAGUGA CCC@LB@3'-UUU...CCCGU G G G A AA GU CUAAA...GCA-5'@LB@ | |@LB@ 78 41@LB@@LB@@LB@Energy -11.83 kcal/mol@LB@Hybridization Energy -24.6454 kcal/mol@LB@Unfolding Energy - mRNA 8.05545 kcal/mol@LB@Unfolding Energy - sRNA 4.7648 kcal/mol@LB@@LB@Position - mRNA 191 -- 229@LB@Position - sRNA 42 -- 77@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 48 -- 54@LB@ |
180 |
0.009034 |
0.1747 |
b3146 |
rsmI |
-12.76 |
0.071583 |
191 -- 238 |
34 -- 76 |
16S rRNA C1402 2'-O-ribose methyltransferase SAM-dependent |
|
_____________190____________________________________________________239\n_____________|______________________________________________________|\n5'-CAG...AAUAC____G____AAUGAAACA___C_______GC_GAUAAUU_______________GCUUU...AGG-3'\n______________GGAC_ACAC_________ACA_CAA_UCG__G_______CUCAGGG_____CCA\n______________:|||_||||_________|||_|||_|||__|_______|||||||_____|||\n______________UCUG_UGUG_________UGU_GUU_AGC__C_______GAGUCCC_____GGU\n3'-UUU...CCGUU____A________________C___A___AA_AAAGU_________CUAAA___ACGAA...GCA-5'\n_____________|______________________________________________________|\n_____________77_____________________________________________________33\n |
229 -- 235 |
42 -- 48 |
-25.3144 kcal/mol |
7.73901 kcal/mol |
4.816 kcal/mol |
190 239@LB@ | |@LB@5'-CAG...AAUAC G AAUGAAACA C GC GAUAAUU GCUUU...AGG-3'@LB@ GGAC ACAC ACA CAA UCG G CUCAGGG CCA@LB@ :||| |||| ||| ||| ||| | ||||||| |||@LB@ UCUG UGUG UGU GUU AGC C GAGUCCC GGU@LB@3'-UUU...CCGUU A C A AA AAAGU CUAAA ACGAA...GCA-5'@LB@ | |@LB@ 77 33@LB@@LB@@LB@Energy -12.76 kcal/mol@LB@Hybridization Energy -25.3144 kcal/mol@LB@Unfolding Energy - mRNA 7.73901 kcal/mol@LB@Unfolding Energy - sRNA 4.816 kcal/mol@LB@@LB@Position - mRNA 191 -- 238@LB@Position - sRNA 34 -- 76@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 42 -- 48@LB@ |
14 |
0.0001025 |
0.0245 |
b4051 |
qorA |
-14.73 |
0.024599 |
192 -- 224 |
48 -- 76 |
quinone oxidoreductase NADPH-dependent |
|
_____________191_______________________________225\n_____________|_________________________________|\n5'-CGC...GUUCU___GG___________CA__AA___AA______AAGCA...UCG-3'\n______________GGA__ACACAUGGCAA__CG__UUG__UUUCAC\n______________:||__|||||::||||__||__|||__||||||\n______________UCU__UGUGUGUCGUU__GC__AAC__AAAGUG\n3'-UUU...CCGUU___GA___________AA_______________AGUCC...GCA-5'\n_____________|_________________________________|\n_____________77________________________________47\n |
201 -- 207 |
61 -- 67 |
-23.6874 kcal/mol |
5.27405 kcal/mol |
3.68714 kcal/mol |
191 225@LB@ | |@LB@5'-CGC...GUUCU GG CA AA AA AAGCA...UCG-3'@LB@ GGA ACACAUGGCAA CG UUG UUUCAC@LB@ :|| |||||::|||| || ||| ||||||@LB@ UCU UGUGUGUCGUU GC AAC AAAGUG@LB@3'-UUU...CCGUU GA AA AGUCC...GCA-5'@LB@ | |@LB@ 77 47@LB@@LB@@LB@Energy -14.73 kcal/mol@LB@Hybridization Energy -23.6874 kcal/mol@LB@Unfolding Energy - mRNA 5.27405 kcal/mol@LB@Unfolding Energy - sRNA 3.68714 kcal/mol@LB@@LB@Position - mRNA 192 -- 224@LB@Position - sRNA 48 -- 76@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 61 -- 67@LB@ |
21 |
0.0001827 |
0.02926 |
b1937 |
fliE |
-13.91 |
0.039102 |
192 -- 221 |
38 -- 77 |
flagellar basal-body component |
|
_____________191________________________________________222\n_____________|__________________________________________|\n5'-CUG...UCCGG_____GAGA___U_______A_____________________GAAGG...GUU-3'\n______________GAGAC____AUG_CAGCGAU_____________CAGGGGAUU\n______________:||||____|::_||||:||_____________|||||||||\n______________UUCUG____UGU_GUCGUUA_____________GUCCCCUAA\n3'-UUU...CCCGU_____AUG____________AGCAACAAAGUGA_________AGGUA...GCA-5'\n_____________|__________________________________________|\n_____________78_________________________________________37\n |
215 -- 221 |
38 -- 44 |
-25.7557 kcal/mol |
7.06678 kcal/mol |
4.77969 kcal/mol |
191 222@LB@ | |@LB@5'-CUG...UCCGG GAGA U A GAAGG...GUU-3'@LB@ GAGAC AUG CAGCGAU CAGGGGAUU@LB@ :|||| |:: ||||:|| |||||||||@LB@ UUCUG UGU GUCGUUA GUCCCCUAA@LB@3'-UUU...CCCGU AUG AGCAACAAAGUGA AGGUA...GCA-5'@LB@ | |@LB@ 78 37@LB@@LB@@LB@Energy -13.91 kcal/mol@LB@Hybridization Energy -25.7557 kcal/mol@LB@Unfolding Energy - mRNA 7.06678 kcal/mol@LB@Unfolding Energy - sRNA 4.77969 kcal/mol@LB@@LB@Position - mRNA 192 -- 221@LB@Position - sRNA 38 -- 77@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 38 -- 44@LB@ |
142 |
0.006549 |
0.1605 |
b3902 |
rhaD |
-9.93 |
0.251242 |
192 -- 218 |
44 -- 69 |
rhamnulose-1-phosphate aldolase |
|
_____________191_________________________219\n_____________|___________________________|\n5'-AGA...CAGGA______AACAUGCAAAACA________UCCUG...UGA-3'\n______________ACACAG_____________UUACUCAG\n______________||||||_____________|:||||||\n______________UGUGUC_____________AGUGAGUC\n3'-UUU...UGAUG______GUUAAGCAACAA_________CCCUA...GCA-5'\n_____________|___________________________|\n_____________70__________________________43\n |
212 -- 218 |
44 -- 50 |
-16.231 kcal/mol |
2.20309 kcal/mol |
4.09554 kcal/mol |
191 219@LB@ | |@LB@5'-AGA...CAGGA AACAUGCAAAACA UCCUG...UGA-3'@LB@ ACACAG UUACUCAG@LB@ |||||| |:||||||@LB@ UGUGUC AGUGAGUC@LB@3'-UUU...UGAUG GUUAAGCAACAA CCCUA...GCA-5'@LB@ | |@LB@ 70 43@LB@@LB@@LB@Energy -9.93 kcal/mol@LB@Hybridization Energy -16.231 kcal/mol@LB@Unfolding Energy - mRNA 2.20309 kcal/mol@LB@Unfolding Energy - sRNA 4.09554 kcal/mol@LB@@LB@Position - mRNA 192 -- 218@LB@Position - sRNA 44 -- 69@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 44 -- 50@LB@ |
56 |
0.001982 |
0.1223 |
b2304 |
yfcH |
-16.49 |
0.008143 |
193 -- 225 |
40 -- 77 |
putative NAD-dependent nucleotide-sugar epimerase |
|
_____________192_________________________________________226\n_____________|___________________________________________|\n5'-AAA...AUCGG________AUGA__________________________A____CAGGA...ACC-3'\n______________GAGGCUGC____ACAUAGUGA_________UCAC_CGG_GGGA\n______________:||:||:|____|||:||::|_________||||_|:|_||||\n______________UUCUGAUG____UGUGUCGUU_________AGUG_GUC_CCCU\n3'-UUU...CCCGU_____________________AAGCAACAA____A________AAAGG...GCA-5'\n_____________|___________________________________________|\n_____________78__________________________________________39\n |
206 -- 212 |
62 -- 68 |
-29.217 kcal/mol |
7.9505 kcal/mol |
4.77871 kcal/mol |
192 226@LB@ | |@LB@5'-AAA...AUCGG AUGA A CAGGA...ACC-3'@LB@ GAGGCUGC ACAUAGUGA UCAC CGG GGGA@LB@ :||:||:| |||:||::| |||| |:| ||||@LB@ UUCUGAUG UGUGUCGUU AGUG GUC CCCU@LB@3'-UUU...CCCGU AAGCAACAA A AAAGG...GCA-5'@LB@ | |@LB@ 78 39@LB@@LB@@LB@Energy -16.49 kcal/mol@LB@Hybridization Energy -29.217 kcal/mol@LB@Unfolding Energy - mRNA 7.9505 kcal/mol@LB@Unfolding Energy - sRNA 4.77871 kcal/mol@LB@@LB@Position - mRNA 193 -- 225@LB@Position - sRNA 40 -- 77@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 62 -- 68@LB@ |
115 |
0.005088 |
0.155 |
b4131 |
cadA |
-16.57 |
0.007707 |
197 -- 237 |
37 -- 75 |
lysine decarboxylase acid-inducible |
|
_____________196__________________________________________238\n_____________|____________________________________________|\n5'-CUC...GAUAU______GA___UUAUU_____A_____AA____AU_________AUUUU...UUG-3'\n______________GACUAU__ACG_____GCAAU___UUG__UCAC___GGGGGUUU\n______________|||||:__||:_____|||||___|||__||||___||||:|||\n______________CUGAUG__UGU_____CGUUA___AAC__AGUG___CCCCUAAA\n3'-UUU...CGUUU______UG_____________AGC___AA____AGU________GGUAC...GCA-5'\n_____________|____________________________________________|\n_____________76___________________________________________36\n |
231 -- 237 |
37 -- 43 |
-27.1465 kcal/mol |
5.79755 kcal/mol |
4.77966 kcal/mol |
196 238@LB@ | |@LB@5'-CUC...GAUAU GA UUAUU A AA AU AUUUU...UUG-3'@LB@ GACUAU ACG GCAAU UUG UCAC GGGGGUUU@LB@ |||||: ||: ||||| ||| |||| ||||:|||@LB@ CUGAUG UGU CGUUA AAC AGUG CCCCUAAA@LB@3'-UUU...CGUUU UG AGC AA AGU GGUAC...GCA-5'@LB@ | |@LB@ 76 36@LB@@LB@@LB@Energy -16.57 kcal/mol@LB@Hybridization Energy -27.1465 kcal/mol@LB@Unfolding Energy - mRNA 5.79755 kcal/mol@LB@Unfolding Energy - sRNA 4.77966 kcal/mol@LB@@LB@Position - mRNA 197 -- 237@LB@Position - sRNA 37 -- 75@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 37 -- 43@LB@ |
34 |
0.0005364 |
0.05552 |
b4244 |
pyrI |
-10.55 |
0.196904 |
198 -- 215 |
60 -- 77 |
aspartate carbamoyltransferase regulatory subunit |
|
_____________197________________216\n_____________|__________________|\n5'-UUC...AAAUA_____G_______A____AAAUU...UCA-3'\n______________GAGAU_ACACACG_UAAU\n______________:|||:_||||||:_:|||\n______________UUCUG_UGUGUGU_GUUA\n3'-UUU...CCCGU_____A_______C____AGCAA...GCA-5'\n_____________|__________________|\n_____________78_________________59\n |
204 -- 210 |
65 -- 71 |
-15.1619 kcal/mol |
1.32522 kcal/mol |
3.29036 kcal/mol |
197 216@LB@ | |@LB@5'-UUC...AAAUA G A AAAUU...UCA-3'@LB@ GAGAU ACACACG UAAU@LB@ :|||: ||||||: :|||@LB@ UUCUG UGUGUGU GUUA@LB@3'-UUU...CCCGU A C AGCAA...GCA-5'@LB@ | |@LB@ 78 59@LB@@LB@@LB@Energy -10.55 kcal/mol@LB@Hybridization Energy -15.1619 kcal/mol@LB@Unfolding Energy - mRNA 1.32522 kcal/mol@LB@Unfolding Energy - sRNA 3.29036 kcal/mol@LB@@LB@Position - mRNA 198 -- 215@LB@Position - sRNA 60 -- 77@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 65 -- 71@LB@ |
53 |
0.001859 |
0.1218 |
b0529 |
folD |
-11.41 |
0.136116 |
200 -- 226 |
61 -- 85 |
bifunctional 5 10-methylene-tetrahydrofolate dehydrogenase/ 5 10-methylene-tetrahydrofolate cyclohydrolase |
|
_____________199_________________________227\n_____________|___________________________|\n5'-CAA...UCUCU_____CA___________UG_______AACGA...CAC-3'\n______________GAUGG__GCAAAGAUUAU__ACGGUAA\n______________|||||__|||||||:||:__||:|:||\n______________CUACC__CGUUUCUGAUG__UGUCGUU\n3'-UUU...ACCCU__________________UG_______AAGCA...GCA-5'\n_____________|___________________________|\n_____________86__________________________60\n |
220 -- 226 |
61 -- 67 |
-27.4215 kcal/mol |
5.77154 kcal/mol |
10.2439 kcal/mol |
199 227@LB@ | |@LB@5'-CAA...UCUCU CA UG AACGA...CAC-3'@LB@ GAUGG GCAAAGAUUAU ACGGUAA@LB@ ||||| |||||||:||: ||:|:||@LB@ CUACC CGUUUCUGAUG UGUCGUU@LB@3'-UUU...ACCCU UG AAGCA...GCA-5'@LB@ | |@LB@ 86 60@LB@@LB@@LB@Energy -11.41 kcal/mol@LB@Hybridization Energy -27.4215 kcal/mol@LB@Unfolding Energy - mRNA 5.77154 kcal/mol@LB@Unfolding Energy - sRNA 10.2439 kcal/mol@LB@@LB@Position - mRNA 200 -- 226@LB@Position - sRNA 61 -- 85@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 61 -- 67@LB@ |