119 |
0.005328 |
0.1553 |
b3417 |
malP |
-6.58 |
0.680720 |
220 -- 257 |
42 -- 71 |
maltodextrin phosphorylase |
|
_____________219____________________________________258\n_____________|______________________________________|\n5'-ACA...UUUUA___AUA________CAG_AAGCGC______G____U__CAGCG...GCC-3'\n______________ACG___AGCAAUUU___G______UUUCAC_UCAG_GG\n______________||:___|||||||:___|______||||||_||||_||\n______________UGU___UCGUUAAG___C______AAAGUG_AGUC_CC\n3'-UUU...UCUGA___GUG________CAA_____________________CUAAA...GCA-5'\n_____________|______________________________________|\n_____________72_____________________________________41\n |
227 -- 233 |
58 -- 64 |
-19.6486 kcal/mol |
8.3321 kcal/mol |
4.73391 kcal/mol |
219 258@LB@ | |@LB@5'-ACA...UUUUA AUA CAG AAGCGC G U CAGCG...GCC-3'@LB@ ACG AGCAAUUU G UUUCAC UCAG GG@LB@ ||: |||||||: | |||||| |||| ||@LB@ UGU UCGUUAAG C AAAGUG AGUC CC@LB@3'-UUU...UCUGA GUG CAA CUAAA...GCA-5'@LB@ | |@LB@ 72 41@LB@@LB@@LB@Energy -6.58 kcal/mol@LB@Hybridization Energy -19.6486 kcal/mol@LB@Unfolding Energy - mRNA 8.3321 kcal/mol@LB@Unfolding Energy - sRNA 4.73391 kcal/mol@LB@@LB@Position - mRNA 220 -- 257@LB@Position - sRNA 42 -- 71@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 58 -- 64@LB@ |
112 |
0.004986 |
0.1545 |
b0118 |
acnB |
-15.18 |
0.018766 |
221 -- 251 |
38 -- 71 |
aconitate hydratase 2; aconitase B; 2-methyl-cis-aconitate hydratase |
|
_____________220________________________________252\n_____________|__________________________________|\n5'-GAG...CGUAA_________UGAG___GC_______G________GCGCC...UGC-3'\n______________GCACGUAGC____CGU_____CGCU_AGGGGAUU\n______________:|||::|||____|||_____|:||_||||||||\n______________UGUGUGUCG____GCA_____GUGA_UCCCCUAA\n3'-UUU...UCUGA_________UUAA___ACAAA____G________AGGUA...GCA-5'\n_____________|__________________________________|\n_____________72_________________________________37\n |
245 -- 251 |
38 -- 44 |
-33.2374 kcal/mol |
13.3072 kcal/mol |
4.74986 kcal/mol |
220 252@LB@ | |@LB@5'-GAG...CGUAA UGAG GC G GCGCC...UGC-3'@LB@ GCACGUAGC CGU CGCU AGGGGAUU@LB@ :|||::||| ||| |:|| ||||||||@LB@ UGUGUGUCG GCA GUGA UCCCCUAA@LB@3'-UUU...UCUGA UUAA ACAAA G AGGUA...GCA-5'@LB@ | |@LB@ 72 37@LB@@LB@@LB@Energy -15.18 kcal/mol@LB@Hybridization Energy -33.2374 kcal/mol@LB@Unfolding Energy - mRNA 13.3072 kcal/mol@LB@Unfolding Energy - sRNA 4.74986 kcal/mol@LB@@LB@Position - mRNA 221 -- 251@LB@Position - sRNA 38 -- 71@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 38 -- 44@LB@ |
77 |
0.003184 |
0.1452 |
b4406 |
yaeP |
-9.70 |
0.274250 |
222 -- 254 |
40 -- 71 |
UPF0253 family protein |
|
_____________221________________________________255\n_____________|__________________________________|\n5'-ACC...AGUUA_______A_____A__CG_AAA________C___GACUU...UGC-3'\n______________AUACGCA_GCGGU_CG__G___UCGC_CAG_GGA\n______________|:||:||_||::|_||__|___||:|_|||_|||\n______________UGUGUGU_CGUUA_GC__C___AGUG_GUC_CCU\n3'-UUU...UCUGA_____________A__AA_AA_____A___C___AAAGG...GCA-5'\n_____________|__________________________________|\n_____________72_________________________________39\n |
222 -- 228 |
65 -- 71 |
-25.8836 kcal/mol |
11.435 kcal/mol |
4.74818 kcal/mol |
221 255@LB@ | |@LB@5'-ACC...AGUUA A A CG AAA C GACUU...UGC-3'@LB@ AUACGCA GCGGU CG G UCGC CAG GGA@LB@ |:||:|| ||::| || | ||:| ||| |||@LB@ UGUGUGU CGUUA GC C AGUG GUC CCU@LB@3'-UUU...UCUGA A AA AA A C AAAGG...GCA-5'@LB@ | |@LB@ 72 39@LB@@LB@@LB@Energy -9.70 kcal/mol@LB@Hybridization Energy -25.8836 kcal/mol@LB@Unfolding Energy - mRNA 11.435 kcal/mol@LB@Unfolding Energy - sRNA 4.74818 kcal/mol@LB@@LB@Position - mRNA 222 -- 254@LB@Position - sRNA 40 -- 71@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 65 -- 71@LB@ |
107 |
0.004745 |
0.1538 |
b2413 |
cysZ |
-9.47 |
0.298503 |
222 -- 238 |
58 -- 74 |
sulfate transporter sulfite inhibited |
|
_____________221_______________239\n_____________|_________________|\n5'-ACC...CAUCU__CC_____________UUACU...UUU-3'\n______________GC__CACGCAGCGGUUU\n______________:|__|||:||||::||:\n______________UG__GUGUGUCGUUAAG\n3'-UUU...GUUUC__AU_____________CAACA...GCA-5'\n_____________|_________________|\n_____________75________________57\n |
232 -- 238 |
58 -- 64 |
-18.5455 kcal/mol |
5.77464 kcal/mol |
3.3008 kcal/mol |
221 239@LB@ | |@LB@5'-ACC...CAUCU CC UUACU...UUU-3'@LB@ GC CACGCAGCGGUUU@LB@ :| |||:||||::||:@LB@ UG GUGUGUCGUUAAG@LB@3'-UUU...GUUUC AU CAACA...GCA-5'@LB@ | |@LB@ 75 57@LB@@LB@@LB@Energy -9.47 kcal/mol@LB@Hybridization Energy -18.5455 kcal/mol@LB@Unfolding Energy - mRNA 5.77464 kcal/mol@LB@Unfolding Energy - sRNA 3.3008 kcal/mol@LB@@LB@Position - mRNA 222 -- 238@LB@Position - sRNA 58 -- 74@LB@Position Seed - mRNA 232 -- 238@LB@Position Seed - sRNA 58 -- 64@LB@ |
129 |
0.005822 |
0.1577 |
b0713 |
ybgL |
-14.99 |
0.021088 |
226 -- 247 |
61 -- 83 |
UPF0271 family protein |
|
_____________225_____________________248\n_____________|_______________________|\n5'-GCC...CGAUC_______________________CGCAG...AUG-3'\n______________UGGGCGAAGGCUGCGC_CAGCGA\n______________|||||:|||:||:|:|_||||:|\n______________ACCCGUUUCUGAUGUG_GUCGUU\n3'-UUU...CCUCU________________U______AAGCA...GCA-5'\n_____________|_______________________|\n_____________84______________________60\n |
234 -- 240 |
69 -- 75 |
-36.9571 kcal/mol |
11.7384 kcal/mol |
10.2322 kcal/mol |
225 248@LB@ | |@LB@5'-GCC...CGAUC CGCAG...AUG-3'@LB@ UGGGCGAAGGCUGCGC CAGCGA@LB@ |||||:|||:||:|:| ||||:|@LB@ ACCCGUUUCUGAUGUG GUCGUU@LB@3'-UUU...CCUCU U AAGCA...GCA-5'@LB@ | |@LB@ 84 60@LB@@LB@@LB@Energy -14.99 kcal/mol@LB@Hybridization Energy -36.9571 kcal/mol@LB@Unfolding Energy - mRNA 11.7384 kcal/mol@LB@Unfolding Energy - sRNA 10.2322 kcal/mol@LB@@LB@Position - mRNA 226 -- 247@LB@Position - sRNA 61 -- 83@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 69 -- 75@LB@ |
134 |
0.006141 |
0.1605 |
b3413 |
gntX |
-10.72 |
0.183370 |
226 -- 267 |
37 -- 75 |
DNA catabolic protein |
|
_____________225__________________________________________268\n_____________|____________________________________________|\n5'-CCC...AUGCU___________AAU__CACUGG____AGG_______________GUUCG...AUA-3'\n______________GGCUAUGC_CG___GC______CGUU___UCAUU_GGGGGAUUU\n______________|:|||::|_|:___||______||||___|||:|_:||||||||\n______________CUGAUGUG_GU___CG______GCAA___AGUGA_UCCCCUAAA\n3'-UUU...CGUUU________U_______UUAA______CAA_____G_________GGUAC...GCA-5'\n_____________|____________________________________________|\n_____________76___________________________________________36\n |
261 -- 267 |
37 -- 43 |
-30.3916 kcal/mol |
14.8943 kcal/mol |
4.77966 kcal/mol |
225 268@LB@ | |@LB@5'-CCC...AUGCU AAU CACUGG AGG GUUCG...AUA-3'@LB@ GGCUAUGC CG GC CGUU UCAUU GGGGGAUUU@LB@ |:|||::| |: || |||| |||:| :||||||||@LB@ CUGAUGUG GU CG GCAA AGUGA UCCCCUAAA@LB@3'-UUU...CGUUU U UUAA CAA G GGUAC...GCA-5'@LB@ | |@LB@ 76 36@LB@@LB@@LB@Energy -10.72 kcal/mol@LB@Hybridization Energy -30.3916 kcal/mol@LB@Unfolding Energy - mRNA 14.8943 kcal/mol@LB@Unfolding Energy - sRNA 4.77966 kcal/mol@LB@@LB@Position - mRNA 226 -- 267@LB@Position - sRNA 37 -- 75@LB@Position Seed - mRNA 261 -- 267@LB@Position Seed - sRNA 37 -- 43@LB@ |
156 |
0.007591 |
0.1668 |
b1044 |
ymdA |
-16.39 |
0.008687 |
226 -- 252 |
46 -- 73 |
uncharacterized protein |
|
_____________225__________________________253\n_____________|____________________________|\n5'-UGA...CUCUC______U____________U________UUAUU...UUU-3'\n______________UUAUGC_CGGCAGUUUGUU_UUUC_CUU\n______________:||::|_|:|||:||:|||_||||_||:\n______________GAUGUG_GUCGUUAAGCAA_AAAG_GAG\n3'-UUU...UUUCU______U____________C____U___UCCCC...GCA-5'\n_____________|____________________________|\n_____________74___________________________45\n |
236 -- 242 |
57 -- 63 |
-24.6333 kcal/mol |
4.51706 kcal/mol |
3.72492 kcal/mol |
225 253@LB@ | |@LB@5'-UGA...CUCUC U U UUAUU...UUU-3'@LB@ UUAUGC CGGCAGUUUGUU UUUC CUU@LB@ :||::| |:|||:||:||| |||| ||:@LB@ GAUGUG GUCGUUAAGCAA AAAG GAG@LB@3'-UUU...UUUCU U C U UCCCC...GCA-5'@LB@ | |@LB@ 74 45@LB@@LB@@LB@Energy -16.39 kcal/mol@LB@Hybridization Energy -24.6333 kcal/mol@LB@Unfolding Energy - mRNA 4.51706 kcal/mol@LB@Unfolding Energy - sRNA 3.72492 kcal/mol@LB@@LB@Position - mRNA 226 -- 252@LB@Position - sRNA 46 -- 73@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 57 -- 63@LB@ |
159 |
0.007688 |
0.1668 |
b0454 |
ybaZ |
-17.74 |
0.003345 |
226 -- 245 |
34 -- 52 |
excision repair protein alkyltransferase-like protein ATL |
|
_____________225__________________246\n_____________|____________________|\n5'-AGG...GCGAC__________C_UU______GAUUA...UUC-3'\n______________UUCACUCGGG_G__UUUCCA\n______________|||||||:||_|__||||||\n______________AAGUGAGUCC_C__AAAGGU\n3'-UUU...CAACA____________CU______ACGAA...GCA-5'\n_____________|____________________|\n_____________53___________________33\n |
229 -- 235 |
43 -- 49 |
-23.7092 kcal/mol |
4.0826 kcal/mol |
1.88482 kcal/mol |
225 246@LB@ | |@LB@5'-AGG...GCGAC C UU GAUUA...UUC-3'@LB@ UUCACUCGGG G UUUCCA@LB@ |||||||:|| | ||||||@LB@ AAGUGAGUCC C AAAGGU@LB@3'-UUU...CAACA CU ACGAA...GCA-5'@LB@ | |@LB@ 53 33@LB@@LB@@LB@Energy -17.74 kcal/mol@LB@Hybridization Energy -23.7092 kcal/mol@LB@Unfolding Energy - mRNA 4.0826 kcal/mol@LB@Unfolding Energy - sRNA 1.88482 kcal/mol@LB@@LB@Position - mRNA 226 -- 245@LB@Position - sRNA 34 -- 52@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 43 -- 49@LB@ |
33 |
0.0005309 |
0.05552 |
b2905 |
gcvT |
-15.66 |
0.013961 |
227 -- 265 |
34 -- 74 |
aminomethyltransferase tetrahydrofolate-dependent subunit (T protein) of glycine cleavage complex |
|
_____________226___________________________________________266\n_____________|_____________________________________________|\n5'-CUG...UACGA__A_______________CG__________CAU__U_________CGGCU...AAA-3'\n______________AC_ACACAC_GC__UUUG__G___CGCUCG___GG_GGAUUUCCA\n______________||_||||||_||__||:|__|___|:|||:___||_|||||||||\n______________UG_UGUGUG_CG__AAGC__C___GUGAGU___CC_CCUAAAGGU\n3'-UUU...GUUUC__A______U__UU____AA_AAA_____________________ACGAA...GCA-5'\n_____________|_____________________________________________|\n_____________75____________________________________________33\n |
259 -- 265 |
34 -- 40 |
-32.8395 kcal/mol |
12.3643 kcal/mol |
4.81599 kcal/mol |
226 266@LB@ | |@LB@5'-CUG...UACGA A CG CAU U CGGCU...AAA-3'@LB@ AC ACACAC GC UUUG G CGCUCG GG GGAUUUCCA@LB@ || |||||| || ||:| | |:|||: || |||||||||@LB@ UG UGUGUG CG AAGC C GUGAGU CC CCUAAAGGU@LB@3'-UUU...GUUUC A U UU AA AAA ACGAA...GCA-5'@LB@ | |@LB@ 75 33@LB@@LB@@LB@Energy -15.66 kcal/mol@LB@Hybridization Energy -32.8395 kcal/mol@LB@Unfolding Energy - mRNA 12.3643 kcal/mol@LB@Unfolding Energy - sRNA 4.81599 kcal/mol@LB@@LB@Position - mRNA 227 -- 265@LB@Position - sRNA 34 -- 74@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 34 -- 40@LB@ |
158 |
0.007677 |
0.1668 |
b1267 |
yciO |
-9.92 |
0.252655 |
228 -- 242 |
61 -- 75 |
putative RNA binding protein |
|
_____________227_____________243\n_____________|_______________|\n5'-GCG...AUCCU___A__C________CGUCU...CAA-3'\n______________GAU_AC_CACAGCAA\n______________||:_||_||||||||\n______________CUG_UG_GUGUCGUU\n3'-UUU...CGUUU___A__U________AAGCA...GCA-5'\n_____________|_______________|\n_____________76______________60\n |
236 -- 242 |
61 -- 67 |
-14.6343 kcal/mol |
1.46218 kcal/mol |
3.25399 kcal/mol |
227 243@LB@ | |@LB@5'-GCG...AUCCU A C CGUCU...CAA-3'@LB@ GAU AC CACAGCAA@LB@ ||: || ||||||||@LB@ CUG UG GUGUCGUU@LB@3'-UUU...CGUUU A U AAGCA...GCA-5'@LB@ | |@LB@ 76 60@LB@@LB@@LB@Energy -9.92 kcal/mol@LB@Hybridization Energy -14.6343 kcal/mol@LB@Unfolding Energy - mRNA 1.46218 kcal/mol@LB@Unfolding Energy - sRNA 3.25399 kcal/mol@LB@@LB@Position - mRNA 228 -- 242@LB@Position - sRNA 61 -- 75@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 61 -- 67@LB@ |