172 |
0.008479 |
0.1735 |
b4395 |
ytjC |
-10.99 |
0.163500 |
244 -- 268 |
34 -- 71 |
phosphatase |
|
_____________243____________________________________269\n_____________|______________________________________|\n5'-UCC...GUGGA____CG________________________________GUCUG...AGC-3'\n______________ACGC__AGCGA__CGU______AUUCAGGG_____CCA\n______________||:|__|||:|__|||______|:||||||_____|||\n______________UGUG__UCGUU__GCA______UGAGUCCC_____GGU\n3'-UUU...UCUGA____UG_____AA___ACAAAG________CUAAA___ACGAA...GCA-5'\n_____________|______________________________________|\n_____________72_____________________________________33\n |
259 -- 265 |
42 -- 48 |
-22.1302 kcal/mol |
6.3498 kcal/mol |
4.79237 kcal/mol |
243 269@LB@ | |@LB@5'-UCC...GUGGA CG GUCUG...AGC-3'@LB@ ACGC AGCGA CGU AUUCAGGG CCA@LB@ ||:| |||:| ||| |:|||||| |||@LB@ UGUG UCGUU GCA UGAGUCCC GGU@LB@3'-UUU...UCUGA UG AA ACAAAG CUAAA ACGAA...GCA-5'@LB@ | |@LB@ 72 33@LB@@LB@@LB@Energy -10.99 kcal/mol@LB@Hybridization Energy -22.1302 kcal/mol@LB@Unfolding Energy - mRNA 6.3498 kcal/mol@LB@Unfolding Energy - sRNA 4.79237 kcal/mol@LB@@LB@Position - mRNA 244 -- 268@LB@Position - sRNA 34 -- 71@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 42 -- 48@LB@ |
62 |
0.002558 |
0.1417 |
b3579 |
yiaO |
-11.31 |
0.142375 |
245 -- 258 |
62 -- 75 |
2 3-diketo-L-gulonate-binding periplasmic protein |
|
_____________244____________259\n_____________|______________|\n5'-ACU...GGCCU________U_____CAUCU...AAA-3'\n______________GGCUGCAU_CAGCA\n______________|:||:||:_|||||\n______________CUGAUGUG_GUCGU\n3'-UUU...CGUUU________U_____UAAGC...GCA-5'\n_____________|______________|\n_____________76_____________61\n |
246 -- 252 |
68 -- 74 |
-19.3904 kcal/mol |
4.83304 kcal/mol |
3.25167 kcal/mol |
244 259@LB@ | |@LB@5'-ACU...GGCCU U CAUCU...AAA-3'@LB@ GGCUGCAU CAGCA@LB@ |:||:||: |||||@LB@ CUGAUGUG GUCGU@LB@3'-UUU...CGUUU U UAAGC...GCA-5'@LB@ | |@LB@ 76 61@LB@@LB@@LB@Energy -11.31 kcal/mol@LB@Hybridization Energy -19.3904 kcal/mol@LB@Unfolding Energy - mRNA 4.83304 kcal/mol@LB@Unfolding Energy - sRNA 3.25167 kcal/mol@LB@@LB@Position - mRNA 245 -- 258@LB@Position - sRNA 62 -- 75@LB@Position Seed - mRNA 246 -- 252@LB@Position Seed - sRNA 68 -- 74@LB@ |
153 |
0.007486 |
0.1668 |
b1732 |
katE |
-14.34 |
0.030774 |
245 -- 275 |
42 -- 74 |
catalase HPII heme d-containing |
|
_____________244___________________________________276\n_____________|_____________________________________|\n5'-UGG...UCACC________AUUC______AG__AA_____________AUGGA...ACG-3'\n______________ACUACACG____CAGCGA__CG_______AC_CGGGG\n______________|||||||:____||||:|__||_______||_|:|||\n______________UGAUGUGU____GUCGUU__GC_______UG_GUCCC\n3'-UUU...GUUUC__________________AA__AACAAAG__A_____CUAAA...GCA-5'\n_____________|_____________________________________|\n_____________75____________________________________41\n |
246 -- 252 |
67 -- 73 |
-24.7059 kcal/mol |
5.60497 kcal/mol |
4.7632 kcal/mol |
244 276@LB@ | |@LB@5'-UGG...UCACC AUUC AG AA AUGGA...ACG-3'@LB@ ACUACACG CAGCGA CG AC CGGGG@LB@ |||||||: ||||:| || || |:|||@LB@ UGAUGUGU GUCGUU GC UG GUCCC@LB@3'-UUU...GUUUC AA AACAAAG A CUAAA...GCA-5'@LB@ | |@LB@ 75 41@LB@@LB@@LB@Energy -14.34 kcal/mol@LB@Hybridization Energy -24.7059 kcal/mol@LB@Unfolding Energy - mRNA 5.60497 kcal/mol@LB@Unfolding Energy - sRNA 4.7632 kcal/mol@LB@@LB@Position - mRNA 245 -- 275@LB@Position - sRNA 42 -- 74@LB@Position Seed - mRNA 246 -- 252@LB@Position Seed - sRNA 67 -- 73@LB@ |
13 |
0.0001005 |
0.0245 |
b1921 |
fliZ |
-13.92 |
0.038869 |
246 -- 263 |
63 -- 78 |
RpoS antagonist; putative regulator of FliA activity |
|
_____________245________________264\n_____________|__________________|\n5'-UGC...AUCUU_______UUAA_______CAGAC...AUC-3'\n______________AAAGACU____ACACAGC\n______________|||||||____|||||||\n______________UUUCUGA____UGUGUCG\n3'-UUU...ACCCG_______UG_________UUAAG...GCA-5'\n_____________|__________________|\n_____________79_________________62\n |
257 -- 263 |
63 -- 69 |
-17.8578 kcal/mol |
0.69523 kcal/mol |
3.24195 kcal/mol |
245 264@LB@ | |@LB@5'-UGC...AUCUU UUAA CAGAC...AUC-3'@LB@ AAAGACU ACACAGC@LB@ ||||||| |||||||@LB@ UUUCUGA UGUGUCG@LB@3'-UUU...ACCCG UG UUAAG...GCA-5'@LB@ | |@LB@ 79 62@LB@@LB@@LB@Energy -13.92 kcal/mol@LB@Hybridization Energy -17.8578 kcal/mol@LB@Unfolding Energy - mRNA 0.69523 kcal/mol@LB@Unfolding Energy - sRNA 3.24195 kcal/mol@LB@@LB@Position - mRNA 246 -- 263@LB@Position - sRNA 63 -- 78@LB@Position Seed - mRNA 257 -- 263@LB@Position Seed - sRNA 63 -- 69@LB@ |
11 |
9.086e-05 |
0.0245 |
b3337 |
bfd |
-12.11 |
0.098410 |
247 -- 280 |
34 -- 76 |
bacterioferritin-associated ferredoxin |
|
_____________246_________________________________________281\n_____________|___________________________________________|\n5'-GCG...UCGUC___________________UCCCC___________________GCAAU...UUC-3'\n______________AGGCUGUGCGC__CAGUUU______UCACUCG______UUCCA\n______________||:||:::|:|__||:||:______||||||:______|||||\n______________UCUGAUGUGUG__GUUAAG______AGUGAGU______AAGGU\n3'-UUU...CCGUU___________UC______CAACAA_______CCCCUA_____ACGAA...GCA-5'\n_____________|___________________________________________|\n_____________77__________________________________________33\n |
269 -- 275 |
45 -- 51 |
-24.9474 kcal/mol |
8.02269 kcal/mol |
4.816 kcal/mol |
246 281@LB@ | |@LB@5'-GCG...UCGUC UCCCC GCAAU...UUC-3'@LB@ AGGCUGUGCGC CAGUUU UCACUCG UUCCA@LB@ ||:||:::|:| ||:||: ||||||: |||||@LB@ UCUGAUGUGUG GUUAAG AGUGAGU AAGGU@LB@3'-UUU...CCGUU UC CAACAA CCCCUA ACGAA...GCA-5'@LB@ | |@LB@ 77 33@LB@@LB@@LB@Energy -12.11 kcal/mol@LB@Hybridization Energy -24.9474 kcal/mol@LB@Unfolding Energy - mRNA 8.02269 kcal/mol@LB@Unfolding Energy - sRNA 4.816 kcal/mol@LB@@LB@Position - mRNA 247 -- 280@LB@Position - sRNA 34 -- 76@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 45 -- 51@LB@ |
164 |
0.007775 |
0.1668 |
b2097 |
fbaB |
-9.67 |
0.277966 |
247 -- 265 |
48 -- 68 |
fructose-bisphosphate aldolase class I |
|
_____________246___________________266\n_____________|_____________________|\n5'-AAU...CCUUU_______C________A_G__AAUUC...AUG-3'\n______________UACAGCA___CGUUGU_U_AC\n______________:||||||___||||||_|_||\n______________GUGUCGU___GCAACA_A_UG\n3'-UUU...GAUGU_______UAA______A_G__AGUCC...GCA-5'\n_____________|_____________________|\n_____________69____________________47\n |
247 -- 253 |
62 -- 68 |
-18.0796 kcal/mol |
4.78239 kcal/mol |
3.63277 kcal/mol |
246 266@LB@ | |@LB@5'-AAU...CCUUU C A G AAUUC...AUG-3'@LB@ UACAGCA CGUUGU U AC@LB@ :|||||| |||||| | ||@LB@ GUGUCGU GCAACA A UG@LB@3'-UUU...GAUGU UAA A G AGUCC...GCA-5'@LB@ | |@LB@ 69 47@LB@@LB@@LB@Energy -9.67 kcal/mol@LB@Hybridization Energy -18.0796 kcal/mol@LB@Unfolding Energy - mRNA 4.78239 kcal/mol@LB@Unfolding Energy - sRNA 3.63277 kcal/mol@LB@@LB@Position - mRNA 247 -- 265@LB@Position - sRNA 48 -- 68@LB@Position Seed - mRNA 247 -- 253@LB@Position Seed - sRNA 62 -- 68@LB@ |
190 |
0.009703 |
0.1776 |
b4125 |
dcuS |
-9.98 |
0.246838 |
251 -- 265 |
60 -- 75 |
sensory histidine kinase in two-component regulatory system with DcuR regulator of anaerobic fumarate respiration |
|
_____________250______________266\n_____________|________________|\n5'-UCC...AAAUU__G_____________CUUAA...UAU-3'\n______________GA_UAC_CACAGUGAU\n______________||_|||_|||||::||\n______________CU_AUG_GUGUCGUUA\n3'-UUU...CGUUU__G___U_________AGCAA...GCA-5'\n_____________|________________|\n_____________76_______________59\n |
259 -- 265 |
60 -- 66 |
-16.3548 kcal/mol |
3.08747 kcal/mol |
3.28851 kcal/mol |
250 266@LB@ | |@LB@5'-UCC...AAAUU G CUUAA...UAU-3'@LB@ GA UAC CACAGUGAU@LB@ || ||| |||||::||@LB@ CU AUG GUGUCGUUA@LB@3'-UUU...CGUUU G U AGCAA...GCA-5'@LB@ | |@LB@ 76 59@LB@@LB@@LB@Energy -9.98 kcal/mol@LB@Hybridization Energy -16.3548 kcal/mol@LB@Unfolding Energy - mRNA 3.08747 kcal/mol@LB@Unfolding Energy - sRNA 3.28851 kcal/mol@LB@@LB@Position - mRNA 251 -- 265@LB@Position - sRNA 60 -- 75@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 60 -- 66@LB@ |
91 |
0.00412 |
0.1538 |
b0931 |
pncB |
-13.41 |
0.051237 |
255 -- 284 |
48 -- 77 |
nicotinate phosphoribosyltransferase |
|
_____________254______________________________285\n_____________|________________________________|\n5'-AUG...CUUAU__________AU_______GC___________CACUA...UGC-3'\n______________AAG_UUGCAU__GCAGCAA__CG_UGUUUCAU\n______________|||_:|:||:__:||||||__||_|||||||:\n______________UUC_GAUGUG__UGUCGUU__GC_ACAAAGUG\n3'-UUU...CCCGU___U_______________AA__A________AGUCC...GCA-5'\n_____________|________________________________|\n_____________78_______________________________47\n |
278 -- 284 |
48 -- 54 |
-26.8209 kcal/mol |
9.72536 kcal/mol |
3.68729 kcal/mol |
254 285@LB@ | |@LB@5'-AUG...CUUAU AU GC CACUA...UGC-3'@LB@ AAG UUGCAU GCAGCAA CG UGUUUCAU@LB@ ||| :|:||: :|||||| || |||||||:@LB@ UUC GAUGUG UGUCGUU GC ACAAAGUG@LB@3'-UUU...CCCGU U AA A AGUCC...GCA-5'@LB@ | |@LB@ 78 47@LB@@LB@@LB@Energy -13.41 kcal/mol@LB@Hybridization Energy -26.8209 kcal/mol@LB@Unfolding Energy - mRNA 9.72536 kcal/mol@LB@Unfolding Energy - sRNA 3.68729 kcal/mol@LB@@LB@Position - mRNA 255 -- 284@LB@Position - sRNA 48 -- 77@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 48 -- 54@LB@ |
152 |
0.007399 |
0.1668 |
b0591 |
entS |
-13.87 |
0.039944 |
258 -- 287 |
45 -- 70 |
enterobactin exporter iron-regulated |
|
_____________257____________________________288\n_____________|______________________________|\n5'-AAU...CGUUU_________UUCC___CUC______U____AUUGU...UGG-3'\n______________CGCGCAGUA____UCG___GUUUCA_CUCA\n______________|:|:|||:|____|||___||||||_||||\n______________GUGUGUCGU____AGC___CAAAGU_GAGU\n3'-UUU...CUGAU_________UA_____AA____________CCCCU...GCA-5'\n_____________|______________________________|\n_____________71_____________________________44\n |
260 -- 266 |
62 -- 68 |
-23.1768 kcal/mol |
5.59312 kcal/mol |
3.71317 kcal/mol |
257 288@LB@ | |@LB@5'-AAU...CGUUU UUCC CUC U AUUGU...UGG-3'@LB@ CGCGCAGUA UCG GUUUCA CUCA@LB@ |:|:|||:| ||| |||||| ||||@LB@ GUGUGUCGU AGC CAAAGU GAGU@LB@3'-UUU...CUGAU UA AA CCCCU...GCA-5'@LB@ | |@LB@ 71 44@LB@@LB@@LB@Energy -13.87 kcal/mol@LB@Hybridization Energy -23.1768 kcal/mol@LB@Unfolding Energy - mRNA 5.59312 kcal/mol@LB@Unfolding Energy - sRNA 3.71317 kcal/mol@LB@@LB@Position - mRNA 258 -- 287@LB@Position - sRNA 45 -- 70@LB@Position Seed - mRNA 260 -- 266@LB@Position Seed - sRNA 62 -- 68@LB@ |
161 |
0.00773 |
0.1668 |
b0945 |
pyrD |
-11.84 |
0.111523 |
258 -- 300 |
33 -- 77 |
dihydro-orotate oxidase FMN-linked |
|
_____________257____________________________________________300\n_____________|______________________________________________|\n5'-UGU...CUCAU___U____UUUU________A__CC__A____A_______ACG____-3'\n______________GAG_UUAC____CAGCAAUU_CG__GU_UUAC_____GGA___CCGU\n______________:||_:|||____||||||||_||__||_|:||_____|||___||:|\n______________UUC_GAUG____GUCGUUAA_GC__CA_AGUG_____CCU___GGUA\n3'-UUU...CCCGU___U____UGU____________AA__A____AGUCC___AAA____CGAAU...GCA-5'\n_____________|_______________________________________________|\n_____________78______________________________________________32\n |
271 -- 277 |
59 -- 65 |
-22.2972 kcal/mol |
5.63827 kcal/mol |
4.81602 kcal/mol |
257 300@LB@ | |@LB@5'-UGU...CUCAU U UUUU A CC A A ACG -3'@LB@ GAG UUAC CAGCAAUU CG GU UUAC GGA CCGU@LB@ :|| :||| |||||||| || || |:|| ||| ||:|@LB@ UUC GAUG GUCGUUAA GC CA AGUG CCU GGUA@LB@3'-UUU...CCCGU U UGU AA A AGUCC AAA CGAAU...GCA-5'@LB@ | |@LB@ 78 32@LB@@LB@@LB@Energy -11.84 kcal/mol@LB@Hybridization Energy -22.2972 kcal/mol@LB@Unfolding Energy - mRNA 5.63827 kcal/mol@LB@Unfolding Energy - sRNA 4.81602 kcal/mol@LB@@LB@Position - mRNA 258 -- 300@LB@Position - sRNA 33 -- 77@LB@Position Seed - mRNA 271 -- 277@LB@Position Seed - sRNA 59 -- 65@LB@ |