| 51 |
0.001912 |
0.1324 |
stm2692 |
N/A |
-10.31 |
0.546971 |
162 -- 173 |
130 -- 141 |
putative HlyD family secretion protein |
|
_____________161__________174\n_____________|____________|\n5'-GUU...CCGUC____________AUGAA...CGU-3'\n______________GGGAGUGGAAAA\n______________||:||||:||||\n______________CCUUCACUUUUU\n3'-UUU...CAUGU____________CCCAU...UCA-5'\n_____________|____________|\n_____________142__________129\n |
166 -- 172 |
131 -- 137 |
-15.3652 kcal/mol |
2.02429 kcal/mol |
2.83702 kcal/mol |
161 174@LB@ | |@LB@5'-GUU...CCGUC AUGAA...CGU-3'@LB@ GGGAGUGGAAAA@LB@ ||:||||:||||@LB@ CCUUCACUUUUU@LB@3'-UUU...CAUGU CCCAU...UCA-5'@LB@ | |@LB@ 142 129@LB@@LB@@LB@Energy -10.31 kcal/mol@LB@Hybridization Energy -15.3652 kcal/mol@LB@Unfolding Energy - mRNA 2.02429 kcal/mol@LB@Unfolding Energy - sRNA 2.83702 kcal/mol@LB@@LB@Position - mRNA 162 -- 173@LB@Position - sRNA 130 -- 141@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 131 -- 137@LB@ |
| 58 |
0.002307 |
0.14 |
stm2234 |
N/A |
-13.92 |
0.174542 |
131 -- 196 |
38 -- 89 |
phage tail protein |
stm2705 stm2233 |
_____________130______197\n_____________|________|\n5'-CUG...UACAC________AUCCA...CAG-3'\n______________CAGACAGG\n______________||||||||\n______________GUCUGUCC\n3'-UUU...UACCU________CAUUU...UCA-5'\n_____________|________|\n_____________90_______37\n |
132 -- 138 |
153 -- 159 |
-13.9425 kcal/mol |
2.61206 kcal/mol |
2.72972 kcal/mol |
130 197@LB@ | |@LB@5'-CUG...UACAC AUCCA...CAG-3'@LB@ CAGACAGG@LB@ ||||||||@LB@ GUCUGUCC@LB@3'-UUU...UACCU CAUUU...UCA-5'@LB@ | |@LB@ 90 37@LB@@LB@@LB@Energy -13.92 kcal/mol@LB@Hybridization Energy -13.9425 kcal/mol@LB@Unfolding Energy - mRNA 2.61206 kcal/mol@LB@Unfolding Energy - sRNA 2.72972 kcal/mol@LB@@LB@Position - mRNA 131 -- 196@LB@Position - sRNA 38 -- 89@LB@Position Seed - mRNA 132 -- 138@LB@Position Seed - sRNA 153 -- 159@LB@ |
| 74 |
0.003449 |
0.1596 |
stm1129 |
N/A |
-19.64 |
0.020096 |
190 -- 238 |
139 -- 186 |
N-acetylmannosamine-6-phosphate 2-epimerase |
stm3337 |
_____________189__________________________________239\n_____________|____________________________________|\n5'-AUA...UGGAU________UAGC_____U__AACA_________C__AAACG...AAA-3'\n______________GUCACUAU____CAGGC_GG____AAGUGUACA_GA\n______________:|||||||____|||:|_||____||:||||||_||\n______________UAGUGAUA____GUCUG_CC____UUUACAUGU_CU\n3'-UUU...GUAAU________CCU______U__CA___________C__UCACU...UCA-5'\n_____________|____________________________________|\n_____________187__________________________________138\n |
229 -- 235 |
142 -- 148 |
-26.4502 kcal/mol |
8.56913 kcal/mol |
5.67007 kcal/mol |
189 239@LB@ | |@LB@5'-AUA...UGGAU UAGC U AACA C AAACG...AAA-3'@LB@ GUCACUAU CAGGC GG AAGUGUACA GA@LB@ :||||||| |||:| || ||:|||||| ||@LB@ UAGUGAUA GUCUG CC UUUACAUGU CU@LB@3'-UUU...GUAAU CCU U CA C UCACU...UCA-5'@LB@ | |@LB@ 187 138@LB@@LB@@LB@Energy -19.64 kcal/mol@LB@Hybridization Energy -26.4502 kcal/mol@LB@Unfolding Energy - mRNA 8.56913 kcal/mol@LB@Unfolding Energy - sRNA 5.67007 kcal/mol@LB@@LB@Position - mRNA 190 -- 238@LB@Position - sRNA 139 -- 186@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 142 -- 148@LB@ |
| 109 |
0.005328 |
0.1728 |
stm3082 |
N/A |
-12.60 |
0.275269 |
106 -- 154 |
38 -- 90 |
galactonate oxidoreductase |
|
_____________105________________________155\n_____________|__________________________|\n5'-AAU...ACAAC______UUUUUA_______UU_____GGCCU...CGG-3'\n______________GCAGAC______AACAACA__CAGCA\n______________|||:||______|||||||__||:||\n______________CGUUUG______UUGUUGU__GUUGU\n3'-UUU...GUUAA______UG__________________AGUGU...UCA-5'\n_____________|__________________________|\n_____________91_________________________37\n |
118 -- 124 |
76 -- 82 |
-16.9817 kcal/mol |
2.50135 kcal/mol |
3.80671 kcal/mol |
105 155@LB@ | |@LB@5'-AAU...ACAAC UUUUUA UU GGCCU...CGG-3'@LB@ GCAGAC AACAACA CAGCA@LB@ |||:|| ||||||| ||:||@LB@ CGUUUG UUGUUGU GUUGU@LB@3'-UUU...GUUAA UG AGUGU...UCA-5'@LB@ | |@LB@ 91 37@LB@@LB@@LB@Energy -12.60 kcal/mol@LB@Hybridization Energy -16.9817 kcal/mol@LB@Unfolding Energy - mRNA 2.50135 kcal/mol@LB@Unfolding Energy - sRNA 3.80671 kcal/mol@LB@@LB@Position - mRNA 106 -- 154@LB@Position - sRNA 38 -- 90@LB@Position Seed - mRNA 118 -- 124@LB@Position Seed - sRNA 76 -- 82@LB@ |
| 128 |
0.006467 |
0.1774 |
stm3907 |
N/A |
-18.55 |
0.030594 |
118 -- 173 |
37 -- 89 |
|
|
_____________117__________________________174\n_____________|____________________________|\n5'-UCA...AAAAA____________ACCAGU______G___AAAAC...UUU-3'\n______________CAGACGCAACAA______CAGCAU_AUA\n______________||:||:||||||______||:|||_|:|\n______________GUUUGUGUUGUU______GUUGUA_UGU\n3'-UUU...UUAAC____________GU__________G___UGGCA...UCA-5'\n_____________|____________________________|\n_____________90___________________________36\n |
123 -- 129 |
78 -- 84 |
-22.8944 kcal/mol |
3.16008 kcal/mol |
6.30461 kcal/mol |
117 174@LB@ | |@LB@5'-UCA...AAAAA ACCAGU G AAAAC...UUU-3'@LB@ CAGACGCAACAA CAGCAU AUA@LB@ ||:||:|||||| ||:||| |:|@LB@ GUUUGUGUUGUU GUUGUA UGU@LB@3'-UUU...UUAAC GU G UGGCA...UCA-5'@LB@ | |@LB@ 90 36@LB@@LB@@LB@Energy -18.55 kcal/mol@LB@Hybridization Energy -22.8944 kcal/mol@LB@Unfolding Energy - mRNA 3.16008 kcal/mol@LB@Unfolding Energy - sRNA 6.30461 kcal/mol@LB@@LB@Position - mRNA 118 -- 173@LB@Position - sRNA 37 -- 89@LB@Position Seed - mRNA 123 -- 129@LB@Position Seed - sRNA 78 -- 84@LB@ |
| 136 |
0.006805 |
0.1774 |
stm2812 |
N/A |
-16.76 |
0.060981 |
84 -- 153 |
36 -- 90 |
MFS transporter |
|
_____________83_____________________________________________154\n_____________|______________________________________________|\n5'-GGC...AUCCG__C________CUCUCCUCAAAGC______UU_______UC_____UCCCC...UGC-3'\n______________GC_AACGCAAU_____________GCACGA__CAUCACG__ACCGU\n______________||_|||:|||:_____________:|||:|__||||||:__|||||\n______________CG_UUGUGUUG_____________UGUGUU__GUAGUGU__UGGCA\n3'-UUU...GUUAA__U________U__________________________________UUCGG...UCA-5'\n_____________|______________________________________________|\n_____________91_____________________________________________35\n |
116 -- 122 |
66 -- 72 |
-26.7431 kcal/mol |
6.46375 kcal/mol |
9.42239 kcal/mol |
83 154@LB@ | |@LB@5'-GGC...AUCCG C CUCUCCUCAAAGC UU UC UCCCC...UGC-3'@LB@ GC AACGCAAU GCACGA CAUCACG ACCGU@LB@ || |||:|||: :|||:| ||||||: |||||@LB@ CG UUGUGUUG UGUGUU GUAGUGU UGGCA@LB@3'-UUU...GUUAA U U UUCGG...UCA-5'@LB@ | |@LB@ 91 35@LB@@LB@@LB@Energy -16.76 kcal/mol@LB@Hybridization Energy -26.7431 kcal/mol@LB@Unfolding Energy - mRNA 6.46375 kcal/mol@LB@Unfolding Energy - sRNA 9.42239 kcal/mol@LB@@LB@Position - mRNA 84 -- 153@LB@Position - sRNA 36 -- 90@LB@Position Seed - mRNA 116 -- 122@LB@Position Seed - sRNA 66 -- 72@LB@ |
| 140 |
0.007169 |
0.182 |
stm3126 |
N/A |
-18.02 |
0.037639 |
66 -- 114 |
39 -- 91 |
putative amino acid transporter |
|
_____________65_______________________________115\n_____________|________________________________|\n5'-AUU...GCGCA______G______U___________UU_____UAUCC...UGA-3'\n______________UGCGGG_ACGGCG_CACAACGUUAU__ACCGU\n______________|||:::_||::|:_||||||:|:|:__|||||\n______________ACGUUU_UGUUGU_GUGUUGUAGUG__UGGCA\n3'-UUU...GGUUA______G______U___________U______UUCGG...UCA-5'\n_____________|________________________________|\n_____________92_______________________________38\n |
82 -- 88 |
69 -- 75 |
-33.8851 kcal/mol |
10.4253 kcal/mol |
9.42541 kcal/mol |
65 115@LB@ | |@LB@5'-AUU...GCGCA G U UU UAUCC...UGA-3'@LB@ UGCGGG ACGGCG CACAACGUUAU ACCGU@LB@ |||::: ||::|: ||||||:|:|: |||||@LB@ ACGUUU UGUUGU GUGUUGUAGUG UGGCA@LB@3'-UUU...GGUUA G U U UUCGG...UCA-5'@LB@ | |@LB@ 92 38@LB@@LB@@LB@Energy -18.02 kcal/mol@LB@Hybridization Energy -33.8851 kcal/mol@LB@Unfolding Energy - mRNA 10.4253 kcal/mol@LB@Unfolding Energy - sRNA 9.42541 kcal/mol@LB@@LB@Position - mRNA 66 -- 114@LB@Position - sRNA 39 -- 91@LB@Position Seed - mRNA 82 -- 88@LB@Position Seed - sRNA 69 -- 75@LB@ |
| 165 |
0.008886 |
0.1918 |
stm0281 |
N/A |
-13.47 |
0.204933 |
267 -- 289 |
36 -- 56 |
type VI secretion system-associated protein |
|
_____________266______________________________________________290\n_____________|________________________________________________|\n5'-UGA...UAAUU____A_____A______A__UAU___C_____UGACC_C_______G_AGUGA...ACC-3'\n______________ACGG_ACGGG_UAAAUG_AU___GAG_UGGAA_____G_GUAGUCU_G\n______________||:|_||:||_||||||_|:___:||_||:||_____|_|||||||_|\n______________UGUC_UGUCC_AUUUAC_UG___UUC_ACUUU_____C_CAUCAGA_C\n3'-UUU...AUACC__________C______A__UCC_________UUC___________G_GAUGG...UCA-5'\n_____________|________________________________________________|\n_____________57_______________________________________________35\n |
219 -- 225 |
121 -- 127 |
-29.4304 kcal/mol |
8.43831 kcal/mol |
11.9516 kcal/mol |
266 290@LB@ | |@LB@5'-UGA...UAAUU A A A UAU C UGACC C G AGUGA...ACC-3'@LB@ ACGG ACGGG UAAAUG AU GAG UGGAA G GUAGUCU G@LB@ ||:| ||:|| |||||| |: :|| ||:|| | ||||||| |@LB@ UGUC UGUCC AUUUAC UG UUC ACUUU C CAUCAGA C@LB@3'-UUU...AUACC C A UCC UUC G GAUGG...UCA-5'@LB@ | |@LB@ 57 35@LB@@LB@@LB@Energy -13.47 kcal/mol@LB@Hybridization Energy -29.4304 kcal/mol@LB@Unfolding Energy - mRNA 8.43831 kcal/mol@LB@Unfolding Energy - sRNA 11.9516 kcal/mol@LB@@LB@Position - mRNA 267 -- 289@LB@Position - sRNA 36 -- 56@LB@Position Seed - mRNA 219 -- 225@LB@Position Seed - sRNA 121 -- 127@LB@ |
| 171 |
0.009384 |
0.1945 |
stm1741 |
N/A |
-12.47 |
0.287408 |
104 -- 168 |
71 -- 131 |
transporter |
|
_____________103_________________________________________________________________________169\n_____________|___________________________________________________________________________|\n5'-GAG...CGACC____CU__________U______CA______UUC___CCUUAAA_______C___A___U_____G_________AUUCG...UGU-3'\n______________GGUG__GGAAGGG_AG_UUUCGC__UGCCGU___CUG_______GUAGACC_GUU_UAA_CGCAA_GGC_UGACA\n______________:|||__::|||||_||_|:||||__|:||||___|||_______|:|||||_:||_:||_|:|||_::|_::|||\n______________UCAC__UUUUCCC_UC_AGAGCG__AUGGCA___GAC_______CGUCUGG_UAA_GUU_GUGUU_UUG_GUUGU\n3'-UUU...GUCCU____U________A_________________CCA___UUAG__________U___C___U_____G___U_____AGUGU...UCA-5'\n_____________|___________________________________________________________________________|\n_____________132_________________________________________________________________________70\n |
139 -- 145 |
95 -- 101 |
-55.0636 kcal/mol |
20.4542 kcal/mol |
20.5091 kcal/mol |
103 169@LB@ | |@LB@5'-GAG...CGACC CU U CA UUC CCUUAAA C A U G AUUCG...UGU-3'@LB@ GGUG GGAAGGG AG UUUCGC UGCCGU CUG GUAGACC GUU UAA CGCAA GGC UGACA@LB@ :||| ::||||| || |:|||| |:|||| ||| |:||||| :|| :|| |:||| ::| ::|||@LB@ UCAC UUUUCCC UC AGAGCG AUGGCA GAC CGUCUGG UAA GUU GUGUU UUG GUUGU@LB@3'-UUU...GUCCU U A CCA UUAG U C U G U AGUGU...UCA-5'@LB@ | |@LB@ 132 70@LB@@LB@@LB@Energy -12.47 kcal/mol@LB@Hybridization Energy -55.0636 kcal/mol@LB@Unfolding Energy - mRNA 20.4542 kcal/mol@LB@Unfolding Energy - sRNA 20.5091 kcal/mol@LB@@LB@Position - mRNA 104 -- 168@LB@Position - sRNA 71 -- 131@LB@Position Seed - mRNA 139 -- 145@LB@Position Seed - sRNA 95 -- 101@LB@ |
| 175 |
0.009595 |
0.1945 |
stm0268 |
N/A |
-12.50 |
0.284574 |
64 -- 117 |
80 -- 130 |
type VI secretion protein |
|
_____________63__________________________________________________________118\n_____________|___________________________________________________________|\n5'-GUU...CCGGC__________AUAACA______A__________AU________A______U________CGUAU...GAC-3'\n______________AGGGUAG_CU______CGCUAC____GUUUGAA__UCGCGGAC_AAUU_C_GACGCAGC\n______________|||||||_||______||||||____||:||||__||||:|||_||||_|_:||:||:|\n______________UCCCAUC_GA______GCGAUG____CAGACUU__AGCGUCUG_UUAA_G_UUGUGUUG\n3'-UUU...CUUUU_______A______________GCAC_________________G____C_U________UUGUG...UCA-5'\n_____________|___________________________________________________________|\n_____________131_________________________________________________________79\n |
111 -- 117 |
80 -- 86 |
-48.3519 kcal/mol |
16.091 kcal/mol |
19.1381 kcal/mol |
63 118@LB@ | |@LB@5'-GUU...CCGGC AUAACA A AU A U CGUAU...GAC-3'@LB@ AGGGUAG CU CGCUAC GUUUGAA UCGCGGAC AAUU C GACGCAGC@LB@ ||||||| || |||||| ||:|||| ||||:||| |||| | :||:||:|@LB@ UCCCAUC GA GCGAUG CAGACUU AGCGUCUG UUAA G UUGUGUUG@LB@3'-UUU...CUUUU A GCAC G C U UUGUG...UCA-5'@LB@ | |@LB@ 131 79@LB@@LB@@LB@Energy -12.50 kcal/mol@LB@Hybridization Energy -48.3519 kcal/mol@LB@Unfolding Energy - mRNA 16.091 kcal/mol@LB@Unfolding Energy - sRNA 19.1381 kcal/mol@LB@@LB@Position - mRNA 64 -- 117@LB@Position - sRNA 80 -- 130@LB@Position Seed - mRNA 111 -- 117@LB@Position Seed - sRNA 80 -- 86@LB@ |
