138 |
0.007086 |
0.182 |
stm0624 |
citC |
-16.00 |
0.081371 |
136 -- 192 |
38 -- 93 |
[citrate (pro-3S)-lyase] ligase |
stm0058 |
_____________135___________________________193\n_____________|_____________________________|\n5'-AAA...AUCAA________________________A____GAAAA...AUA-3'\n______________GUUGC_AACACA___GCGCAACAU_UACA\n______________:||||_||||||___:|:||||||_:|||\n______________UAACG_UUGUGU___UGUGUUGUA_GUGU\n3'-UUU...CUGGU_____U______UGU______________UGGCA...UCA-5'\n_____________|_____________________________|\n_____________94____________________________37\n |
149 -- 155 |
70 -- 76 |
-24.6588 kcal/mol |
7.05918 kcal/mol |
6.32558 kcal/mol |
135 193@LB@ | |@LB@5'-AAA...AUCAA A GAAAA...AUA-3'@LB@ GUUGC AACACA GCGCAACAU UACA@LB@ :|||| |||||| :|:|||||| :|||@LB@ UAACG UUGUGU UGUGUUGUA GUGU@LB@3'-UUU...CUGGU U UGU UGGCA...UCA-5'@LB@ | |@LB@ 94 37@LB@@LB@@LB@Energy -16.00 kcal/mol@LB@Hybridization Energy -24.6588 kcal/mol@LB@Unfolding Energy - mRNA 7.05918 kcal/mol@LB@Unfolding Energy - sRNA 6.32558 kcal/mol@LB@@LB@Position - mRNA 136 -- 192@LB@Position - sRNA 38 -- 93@LB@Position Seed - mRNA 149 -- 155@LB@Position Seed - sRNA 70 -- 76@LB@ |
134 |
0.006725 |
0.1774 |
stm0546 |
fimD |
-17.45 |
0.046766 |
176 -- 200 |
37 -- 60 |
outer membrane usher protein |
stm0301 stm0175 stm4593 stm3638 stm0023 |
_____________175_____________201\n_____________|_______________|\n5'-UCA...AAGCC______G________GAAGA...CGA-3'\n______________ACACGA_AACACGAU\n______________||||:|_|||||:|:\n______________UGUGUU_UUGUGUUG\n3'-UUU...ACGUU______G________UAGUG...UCA-5'\n_____________|_______________|\n_____________61______________36\n |
196 -- 202 |
72 -- 78 |
-17.1314 kcal/mol |
2.16166 kcal/mol |
3.50587 kcal/mol |
175 201@LB@ | |@LB@5'-UCA...AAGCC G GAAGA...CGA-3'@LB@ ACACGA AACACGAU@LB@ ||||:| |||||:|:@LB@ UGUGUU UUGUGUUG@LB@3'-UUU...ACGUU G UAGUG...UCA-5'@LB@ | |@LB@ 61 36@LB@@LB@@LB@Energy -17.45 kcal/mol@LB@Hybridization Energy -17.1314 kcal/mol@LB@Unfolding Energy - mRNA 2.16166 kcal/mol@LB@Unfolding Energy - sRNA 3.50587 kcal/mol@LB@@LB@Position - mRNA 176 -- 200@LB@Position - sRNA 37 -- 60@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 72 -- 78@LB@ |
190 |
0.01053 |
0.1967 |
stm4032 |
N/A |
-12.98 |
0.242168 |
37 -- 92 |
31 -- 85 |
lipase |
stm0490 |
_____________36__________________93\n_____________|___________________|\n5'-CUU...UCGCG____G______G_______GAGGG...GCU-3'\n______________AACA_AAUAUU_AUGACCG\n______________||||_||:||:_|::||||\n______________UUGU_UUGUAG_UGUUGGC\n3'-UUU...UGUUG____G______________AUUCG...UCA-5'\n_____________|___________________|\n_____________86__________________30\n |
283 -- 289 |
62 -- 68 |
-14.8704 kcal/mol |
1.51414 kcal/mol |
6.51321 kcal/mol |
36 93@LB@ | |@LB@5'-CUU...UCGCG G G GAGGG...GCU-3'@LB@ AACA AAUAUU AUGACCG@LB@ |||| ||:||: |::||||@LB@ UUGU UUGUAG UGUUGGC@LB@3'-UUU...UGUUG G AUUCG...UCA-5'@LB@ | |@LB@ 86 30@LB@@LB@@LB@Energy -12.98 kcal/mol@LB@Hybridization Energy -14.8704 kcal/mol@LB@Unfolding Energy - mRNA 1.51414 kcal/mol@LB@Unfolding Energy - sRNA 6.51321 kcal/mol@LB@@LB@Position - mRNA 37 -- 92@LB@Position - sRNA 31 -- 85@LB@Position Seed - mRNA 283 -- 289@LB@Position Seed - sRNA 62 -- 68@LB@ |
75 |
0.003517 |
0.1596 |
stm1214 |
ycfR |
-14.36 |
0.148951 |
168 -- 212 |
35 -- 81 |
multiple stress resistance protein BhsA |
stm0823 |
_____________167______________213\n_____________|________________|\n5'-AAA...ACCAC_________CA_____AUUCA...AAC-3'\n______________UUCUGGCUC___GAGU\n______________|||:|||||___:|||\n______________AAGGCCGAG___UUCA\n3'-UUU...AAAGC_________UCC____-5'\n_____________|_______________|\n_____________82______________35\n |
15 -- 21 |
8 -- 14 |
-15.9373 kcal/mol |
4.12962 kcal/mol |
4.82557 kcal/mol |
167 213@LB@ | |@LB@5'-AAA...ACCAC CA AUUCA...AAC-3'@LB@ UUCUGGCUC GAGU@LB@ |||:||||| :|||@LB@ AAGGCCGAG UUCA@LB@3'-UUU...AAAGC UCC -5'@LB@ | |@LB@ 82 35@LB@@LB@@LB@Energy -14.36 kcal/mol@LB@Hybridization Energy -15.9373 kcal/mol@LB@Unfolding Energy - mRNA 4.12962 kcal/mol@LB@Unfolding Energy - sRNA 4.82557 kcal/mol@LB@@LB@Position - mRNA 168 -- 212@LB@Position - sRNA 35 -- 81@LB@Position Seed - mRNA 15 -- 21@LB@Position Seed - sRNA 8 -- 14@LB@ |
95 |
0.004301 |
0.1596 |
stm4114 |
pflD |
-11.77 |
0.360092 |
46 -- 100 |
34 -- 88 |
formate C-acetyltransferase |
stm0843 |
_____________45_____________________101\n_____________|______________________|\n5'-UUU...CGGUA_______C______________GAACA...AGA-3'\n______________AAACGCG_CGACGC__CAUUAU\n______________||||:|:_|:||:|__|||:|:\n______________UUUGUGU_GUUGUG__GUAGUG\n3'-UUU...UAACG_______U______UU______UUGGC...UCA-5'\n_____________|______________________|\n_____________89_____________________33\n |
46 -- 52 |
82 -- 88 |
-16.7675 kcal/mol |
5.49067 kcal/mol |
5.48747 kcal/mol |
45 101@LB@ | |@LB@5'-UUU...CGGUA C GAACA...AGA-3'@LB@ AAACGCG CGACGC CAUUAU@LB@ ||||:|: |:||:| |||:|:@LB@ UUUGUGU GUUGUG GUAGUG@LB@3'-UUU...UAACG U UU UUGGC...UCA-5'@LB@ | |@LB@ 89 33@LB@@LB@@LB@Energy -11.77 kcal/mol@LB@Hybridization Energy -16.7675 kcal/mol@LB@Unfolding Energy - mRNA 5.49067 kcal/mol@LB@Unfolding Energy - sRNA 5.48747 kcal/mol@LB@@LB@Position - mRNA 46 -- 100@LB@Position - sRNA 34 -- 88@LB@Position Seed - mRNA 46 -- 52@LB@Position Seed - sRNA 82 -- 88@LB@ |
46 |
0.001637 |
0.1267 |
stm2313 |
elaC |
-17.21 |
0.051329 |
250 -- 300 |
51 -- 90 |
ribonuclease Z |
stm1109 |
_____________249_____________________________________________301\n_____________|_______________________________________________|\n5'-UCG...CUCAC____UGUA________UUUAUUACAUCU________CAAC_______GGAG-3'\n______________GCAA____ACGGCAAU____________GCAACAUC____GCAGCCG\n______________||||____||::|||:____________:|||||||____:||:|||\n______________CGUU____UGUUGUUG____________UGUUGUAG____UGUUGGC\n3'-UUU...GUUAA____UG_________________________________________AUUCG...UCA-5'\n_____________|_______________________________________________|\n_____________91______________________________________________50\n |
290 -- 296 |
62 -- 68 |
-28.5454 kcal/mol |
7.10881 kcal/mol |
8.62576 kcal/mol |
249 301@LB@ | |@LB@5'-UCG...CUCAC UGUA UUUAUUACAUCU CAAC GGAG-3'@LB@ GCAA ACGGCAAU GCAACAUC GCAGCCG@LB@ |||| ||::|||: :||||||| :||:|||@LB@ CGUU UGUUGUUG UGUUGUAG UGUUGGC@LB@3'-UUU...GUUAA UG AUUCG...UCA-5'@LB@ | |@LB@ 91 50@LB@@LB@@LB@Energy -17.21 kcal/mol@LB@Hybridization Energy -28.5454 kcal/mol@LB@Unfolding Energy - mRNA 7.10881 kcal/mol@LB@Unfolding Energy - sRNA 8.62576 kcal/mol@LB@@LB@Position - mRNA 250 -- 300@LB@Position - sRNA 51 -- 90@LB@Position Seed - mRNA 290 -- 296@LB@Position Seed - sRNA 62 -- 68@LB@ |
135 |
0.006796 |
0.1774 |
stm1044 |
sodC |
-14.39 |
0.147293 |
208 -- 244 |
43 -- 78 |
Gifsy-2 prophage superoxide dismutase precursor (Cu-Zn) |
stm1440 stm0924 |
_____________207__________245\n_____________|____________|\n5'-GAA...GCUUU____________CAGGG...CCA-3'\n______________GGUGGUCUCGCU\n______________|||:||||||||\n______________CCAUCAGAGCGA\n3'-UUU...UUUUC____________UGGCA...UCA-5'\n_____________|____________|\n_____________79___________42\n |
78 -- 84 |
117 -- 123 |
-21.9622 kcal/mol |
4.44224 kcal/mol |
6.55795 kcal/mol |
207 245@LB@ | |@LB@5'-GAA...GCUUU CAGGG...CCA-3'@LB@ GGUGGUCUCGCU@LB@ |||:||||||||@LB@ CCAUCAGAGCGA@LB@3'-UUU...UUUUC UGGCA...UCA-5'@LB@ | |@LB@ 79 42@LB@@LB@@LB@Energy -14.39 kcal/mol@LB@Hybridization Energy -21.9622 kcal/mol@LB@Unfolding Energy - mRNA 4.44224 kcal/mol@LB@Unfolding Energy - sRNA 6.55795 kcal/mol@LB@@LB@Position - mRNA 208 -- 244@LB@Position - sRNA 43 -- 78@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 117 -- 123@LB@ |
58 |
0.002307 |
0.14 |
stm2234 |
N/A |
-13.92 |
0.174542 |
131 -- 196 |
38 -- 89 |
phage tail protein |
stm2705 stm2233 |
_____________130______197\n_____________|________|\n5'-CUG...UACAC________AUCCA...CAG-3'\n______________CAGACAGG\n______________||||||||\n______________GUCUGUCC\n3'-UUU...UACCU________CAUUU...UCA-5'\n_____________|________|\n_____________90_______37\n |
132 -- 138 |
153 -- 159 |
-13.9425 kcal/mol |
2.61206 kcal/mol |
2.72972 kcal/mol |
130 197@LB@ | |@LB@5'-CUG...UACAC AUCCA...CAG-3'@LB@ CAGACAGG@LB@ ||||||||@LB@ GUCUGUCC@LB@3'-UUU...UACCU CAUUU...UCA-5'@LB@ | |@LB@ 90 37@LB@@LB@@LB@Energy -13.92 kcal/mol@LB@Hybridization Energy -13.9425 kcal/mol@LB@Unfolding Energy - mRNA 2.61206 kcal/mol@LB@Unfolding Energy - sRNA 2.72972 kcal/mol@LB@@LB@Position - mRNA 131 -- 196@LB@Position - sRNA 38 -- 89@LB@Position Seed - mRNA 132 -- 138@LB@Position Seed - sRNA 153 -- 159@LB@ |
74 |
0.003449 |
0.1596 |
stm1129 |
N/A |
-19.64 |
0.020096 |
190 -- 238 |
139 -- 186 |
N-acetylmannosamine-6-phosphate 2-epimerase |
stm3337 |
_____________189__________________________________239\n_____________|____________________________________|\n5'-AUA...UGGAU________UAGC_____U__AACA_________C__AAACG...AAA-3'\n______________GUCACUAU____CAGGC_GG____AAGUGUACA_GA\n______________:|||||||____|||:|_||____||:||||||_||\n______________UAGUGAUA____GUCUG_CC____UUUACAUGU_CU\n3'-UUU...GUAAU________CCU______U__CA___________C__UCACU...UCA-5'\n_____________|____________________________________|\n_____________187__________________________________138\n |
229 -- 235 |
142 -- 148 |
-26.4502 kcal/mol |
8.56913 kcal/mol |
5.67007 kcal/mol |
189 239@LB@ | |@LB@5'-AUA...UGGAU UAGC U AACA C AAACG...AAA-3'@LB@ GUCACUAU CAGGC GG AAGUGUACA GA@LB@ :||||||| |||:| || ||:|||||| ||@LB@ UAGUGAUA GUCUG CC UUUACAUGU CU@LB@3'-UUU...GUAAU CCU U CA C UCACU...UCA-5'@LB@ | |@LB@ 187 138@LB@@LB@@LB@Energy -19.64 kcal/mol@LB@Hybridization Energy -26.4502 kcal/mol@LB@Unfolding Energy - mRNA 8.56913 kcal/mol@LB@Unfolding Energy - sRNA 5.67007 kcal/mol@LB@@LB@Position - mRNA 190 -- 238@LB@Position - sRNA 139 -- 186@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 142 -- 148@LB@ |
41 |
0.001426 |
0.1215 |
stm3718 |
rfaI |
-15.09 |
0.114319 |
193 -- 209 |
157 -- 173 |
lipopolysaccharide 1 3-galactosyltransferase |
stm3717 |
_____________192_______________210\n_____________|_________________|\n5'-AUG...AAAAG___________A_____AAAUA...GGA-3'\n______________UGAUCACUAUG_GCAGA\n______________|:|||||||||_:||||\n______________AUUAGUGAUAC_UGUCU\n3'-UUU...AUGUA___________C_____GUCCC...UCA-5'\n_____________|_________________|\n_____________174_______________156\n |
197 -- 203 |
163 -- 169 |
-20.9664 kcal/mol |
2.81615 kcal/mol |
3.98136 kcal/mol |
192 210@LB@ | |@LB@5'-AUG...AAAAG A AAAUA...GGA-3'@LB@ UGAUCACUAUG GCAGA@LB@ |:||||||||| :||||@LB@ AUUAGUGAUAC UGUCU@LB@3'-UUU...AUGUA C GUCCC...UCA-5'@LB@ | |@LB@ 174 156@LB@@LB@@LB@Energy -15.09 kcal/mol@LB@Hybridization Energy -20.9664 kcal/mol@LB@Unfolding Energy - mRNA 2.81615 kcal/mol@LB@Unfolding Energy - sRNA 3.98136 kcal/mol@LB@@LB@Position - mRNA 193 -- 209@LB@Position - sRNA 157 -- 173@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 163 -- 169@LB@ |