82 |
0.003783 |
0.1596 |
stm0710 |
ybgH |
-19.90 |
0.018103 |
103 -- 151 |
33 -- 90 |
MFS transporter |
|
_____________102__________________152\n_____________|____________________|\n5'-GCG...UUUAA_G__________________GGCUU...UUC-3'\n______________G_AAACACGGCGAUACGGCA\n______________|_||||||::|:|:||::||\n______________C_UUUGUGUUGUUGUGUUGU\n3'-UUU...GUUAA_G__________________AGUGU...UCA-5'\n_____________|____________________|\n_____________91___________________32\n |
116 -- 122 |
71 -- 77 |
-24.8461 kcal/mol |
5.94354 kcal/mol |
3.80671 kcal/mol |
102 152@LB@ | |@LB@5'-GCG...UUUAA G GGCUU...UUC-3'@LB@ G AAACACGGCGAUACGGCA@LB@ | ||||||::|:|:||::||@LB@ C UUUGUGUUGUUGUGUUGU@LB@3'-UUU...GUUAA G AGUGU...UCA-5'@LB@ | |@LB@ 91 32@LB@@LB@@LB@Energy -19.90 kcal/mol@LB@Hybridization Energy -24.8461 kcal/mol@LB@Unfolding Energy - mRNA 5.94354 kcal/mol@LB@Unfolding Energy - sRNA 3.80671 kcal/mol@LB@@LB@Position - mRNA 103 -- 151@LB@Position - sRNA 33 -- 90@LB@Position Seed - mRNA 116 -- 122@LB@Position Seed - sRNA 71 -- 77@LB@ |
60 |
0.002585 |
0.1534 |
stm0758 |
ybgR |
-11.90 |
0.345594 |
235 -- 293 |
32 -- 91 |
cation transporter |
|
_____________234_________________________294\n_____________|___________________________|\n5'-GGU...ACACC___CG___G__________U_______CUGCU...UCC-3'\n______________UGC__AAA_AUAAUAAUGC__CGUCGC\n______________|||__|||_|:||:||::|__|:||:|\n______________ACG__UUU_UGUUGUUGUG__GUAGUG\n3'-UUU...GGUUA________G__________UU______UUGGC...UCA-5'\n_____________|___________________________|\n_____________92__________________________31\n |
247 -- 253 |
75 -- 81 |
-19.147 kcal/mol |
4.2306 kcal/mol |
5.6854 kcal/mol |
234 294@LB@ | |@LB@5'-GGU...ACACC CG G U CUGCU...UCC-3'@LB@ UGC AAA AUAAUAAUGC CGUCGC@LB@ ||| ||| |:||:||::| |:||:|@LB@ ACG UUU UGUUGUUGUG GUAGUG@LB@3'-UUU...GGUUA G UU UUGGC...UCA-5'@LB@ | |@LB@ 92 31@LB@@LB@@LB@Energy -11.90 kcal/mol@LB@Hybridization Energy -19.147 kcal/mol@LB@Unfolding Energy - mRNA 4.2306 kcal/mol@LB@Unfolding Energy - sRNA 5.6854 kcal/mol@LB@@LB@Position - mRNA 235 -- 293@LB@Position - sRNA 32 -- 91@LB@Position Seed - mRNA 247 -- 253@LB@Position Seed - sRNA 75 -- 81@LB@ |
183 |
0.01015 |
0.1966 |
stm0813 |
ybhP |
-18.40 |
0.032407 |
2 -- 54 |
36 -- 90 |
similar to E. coli orf hypothetical protein (AAC73877.1); Blastp hit to AAC73877.1 (253 aa) 86% identity in aa 1 - 253 |
|
_____________1____________________________________55\n_____________|____________________________________|\n__________5'-A____________UA__CU__CA______________GGUUG...UGC-3'\n______________GUAAAUGCAACA__AU__GC___ACAACCG_AGGCC\n______________|:|||::|||||__|:__:|___|||||||_|:|||\n______________CGUUUGUGUUGU__UG__UG___UGUUGGC_UUCGG\n3'-UUU...GUUAA____________UG__U___UAG_______A_____UUUUC...UCA-5'\n_____________|____________________________________|\n_____________91___________________________________35\n |
24 -- 30 |
62 -- 68 |
-32.6929 kcal/mol |
6.87264 kcal/mol |
11.8287 kcal/mol |
1 55@LB@ | |@LB@ 5'-A UA CU CA GGUUG...UGC-3'@LB@ GUAAAUGCAACA AU GC ACAACCG AGGCC@LB@ |:|||::||||| |: :| ||||||| |:|||@LB@ CGUUUGUGUUGU UG UG UGUUGGC UUCGG@LB@3'-UUU...GUUAA UG U UAG A UUUUC...UCA-5'@LB@ | |@LB@ 91 35@LB@@LB@@LB@Energy -18.40 kcal/mol@LB@Hybridization Energy -32.6929 kcal/mol@LB@Unfolding Energy - mRNA 6.87264 kcal/mol@LB@Unfolding Energy - sRNA 11.8287 kcal/mol@LB@@LB@Position - mRNA 2 -- 54@LB@Position - sRNA 36 -- 90@LB@Position Seed - mRNA 24 -- 30@LB@Position Seed - sRNA 62 -- 68@LB@ |
97 |
0.004849 |
0.1728 |
stm0832 |
ybiF |
-11.58 |
0.382043 |
25 -- 72 |
45 -- 91 |
threonine/homoserine exporter RhtA |
|
_____________24______________________73\n_____________|_______________________|\n5'-GGC...GCGCG_________________U_____CAGAU...CGU-3'\n______________UGC_GGCGCGAUA_CAU__CAUC\n______________|||_::|:|:|:|_||:__||||\n______________ACG_UUGUGUUGU_GUG__GUAG\n3'-UUU...GGUUA___U_________U___UU____UGUUG...UCA-5'\n_____________|_______________________|\n_____________92______________________44\n |
30 -- 36 |
79 -- 85 |
-16.3644 kcal/mol |
3.58897 kcal/mol |
4.34303 kcal/mol |
24 73@LB@ | |@LB@5'-GGC...GCGCG U CAGAU...CGU-3'@LB@ UGC GGCGCGAUA CAU CAUC@LB@ ||| ::|:|:|:| ||: ||||@LB@ ACG UUGUGUUGU GUG GUAG@LB@3'-UUU...GGUUA U U UU UGUUG...UCA-5'@LB@ | |@LB@ 92 44@LB@@LB@@LB@Energy -11.58 kcal/mol@LB@Hybridization Energy -16.3644 kcal/mol@LB@Unfolding Energy - mRNA 3.58897 kcal/mol@LB@Unfolding Energy - sRNA 4.34303 kcal/mol@LB@@LB@Position - mRNA 25 -- 72@LB@Position - sRNA 45 -- 91@LB@Position Seed - mRNA 30 -- 36@LB@Position Seed - sRNA 79 -- 85@LB@ |
139 |
0.007115 |
0.182 |
stm0826 |
ybiN |
-18.61 |
0.029895 |
232 -- 282 |
36 -- 90 |
23S rRNA (adenine(1618)-N(6))-methyltransferase |
|
_____________231___________________283\n_____________|_____________________|\n5'-CUC...GAGCC_____AACGAGCG________AAUUC...UUC-3'\n______________GAUCA________AGGCAGGG\n______________:||||________||:|||||\n______________UUAGU________UCUGUCCC\n3'-UUU...UGUAA_____GAUACCUG________AUUUA...UCA-5'\n_____________|_____________________|\n_____________91____________________35\n |
124 -- 130 |
152 -- 158 |
-17.5433 kcal/mol |
4.82059 kcal/mol |
3.53427 kcal/mol |
231 283@LB@ | |@LB@5'-CUC...GAGCC AACGAGCG AAUUC...UUC-3'@LB@ GAUCA AGGCAGGG@LB@ :|||| ||:|||||@LB@ UUAGU UCUGUCCC@LB@3'-UUU...UGUAA GAUACCUG AUUUA...UCA-5'@LB@ | |@LB@ 91 35@LB@@LB@@LB@Energy -18.61 kcal/mol@LB@Hybridization Energy -17.5433 kcal/mol@LB@Unfolding Energy - mRNA 4.82059 kcal/mol@LB@Unfolding Energy - sRNA 3.53427 kcal/mol@LB@@LB@Position - mRNA 232 -- 282@LB@Position - sRNA 36 -- 90@LB@Position Seed - mRNA 124 -- 130@LB@Position Seed - sRNA 152 -- 158@LB@ |
189 |
0.01049 |
0.1967 |
stm0871 |
ybjM |
-13.57 |
0.197684 |
34 -- 53 |
71 -- 89 |
similar to E. coli orf hypothetical protein (AAC73935.1); Blastp hit to AAC73935.1 (125 aa) 72% identity in aa 1 - 125 |
|
_____________33___________________54\n_____________|____________________|\n5'-AAU...GCAUC______AA____________AUAUA...GCG-3'\n______________CAAAUA__AACAACACAACA\n______________||||:|__||||||||||||\n______________GUUUGU__UUGUUGUGUUGU\n3'-UUU...UUAAC______G_____________AGUGU...UCA-5'\n_____________|____________________|\n_____________90___________________70\n |
47 -- 53 |
71 -- 77 |
-19.7565 kcal/mol |
2.01075 kcal/mol |
3.79866 kcal/mol |
33 54@LB@ | |@LB@5'-AAU...GCAUC AA AUAUA...GCG-3'@LB@ CAAAUA AACAACACAACA@LB@ ||||:| ||||||||||||@LB@ GUUUGU UUGUUGUGUUGU@LB@3'-UUU...UUAAC G AGUGU...UCA-5'@LB@ | |@LB@ 90 70@LB@@LB@@LB@Energy -13.57 kcal/mol@LB@Hybridization Energy -19.7565 kcal/mol@LB@Unfolding Energy - mRNA 2.01075 kcal/mol@LB@Unfolding Energy - sRNA 3.79866 kcal/mol@LB@@LB@Position - mRNA 34 -- 53@LB@Position - sRNA 71 -- 89@LB@Position Seed - mRNA 47 -- 53@LB@Position Seed - sRNA 71 -- 77@LB@ |
75 |
0.003517 |
0.1596 |
stm1214 |
ycfR |
-14.36 |
0.148951 |
168 -- 212 |
35 -- 81 |
multiple stress resistance protein BhsA |
stm0823 |
_____________167______________213\n_____________|________________|\n5'-AAA...ACCAC_________CA_____AUUCA...AAC-3'\n______________UUCUGGCUC___GAGU\n______________|||:|||||___:|||\n______________AAGGCCGAG___UUCA\n3'-UUU...AAAGC_________UCC____-5'\n_____________|_______________|\n_____________82______________35\n |
15 -- 21 |
8 -- 14 |
-15.9373 kcal/mol |
4.12962 kcal/mol |
4.82557 kcal/mol |
167 213@LB@ | |@LB@5'-AAA...ACCAC CA AUUCA...AAC-3'@LB@ UUCUGGCUC GAGU@LB@ |||:||||| :|||@LB@ AAGGCCGAG UUCA@LB@3'-UUU...AAAGC UCC -5'@LB@ | |@LB@ 82 35@LB@@LB@@LB@Energy -14.36 kcal/mol@LB@Hybridization Energy -15.9373 kcal/mol@LB@Unfolding Energy - mRNA 4.12962 kcal/mol@LB@Unfolding Energy - sRNA 4.82557 kcal/mol@LB@@LB@Position - mRNA 168 -- 212@LB@Position - sRNA 35 -- 81@LB@Position Seed - mRNA 15 -- 21@LB@Position Seed - sRNA 8 -- 14@LB@ |
156 |
0.008228 |
0.1845 |
stm1715 |
yciN |
-28.69 |
0.000575 |
104 -- 163 |
36 -- 90 |
similar to E. coli orf hypothetical protein (AAC74355.1); Blastp hit to AAC74355.1 (83 aa) 92% identity in aa 1 - 83 |
|
_____________103___________________________________________________________164\n_____________|_____________________________________________________________|\n5'-UCG...UGCCA____________UG____AUC_____AUUUC_______AAUAUUU___________G____UCAGC...CCA-3'\n______________GUGAACGCAACA__ACAA___CAUCA_____CUGUGAG_______GCCCAUCAGAA__UGC\n______________|::|||:|||||__||||___|||||_____|:||:||_______|||||||||||__:||\n______________CGUUUGUGUUGU__UGUU___GUAGU_____GGCAUUC_______CGGGUAGUCUU__GCG\n3'-UUU...GUUAA____________UG____________GUU_________GGUUUU____________GU___UAAGG...UCA-5'\n_____________|_____________________________________________________________|\n_____________91____________________________________________________________35\n |
152 -- 158 |
42 -- 48 |
-53.6458 kcal/mol |
9.96696 kcal/mol |
22.5 kcal/mol |
103 164@LB@ | |@LB@5'-UCG...UGCCA UG AUC AUUUC AAUAUUU G UCAGC...CCA-3'@LB@ GUGAACGCAACA ACAA CAUCA CUGUGAG GCCCAUCAGAA UGC@LB@ |::|||:||||| |||| ||||| |:||:|| ||||||||||| :||@LB@ CGUUUGUGUUGU UGUU GUAGU GGCAUUC CGGGUAGUCUU GCG@LB@3'-UUU...GUUAA UG GUU GGUUUU GU UAAGG...UCA-5'@LB@ | |@LB@ 91 35@LB@@LB@@LB@Energy -28.69 kcal/mol@LB@Hybridization Energy -53.6458 kcal/mol@LB@Unfolding Energy - mRNA 9.96696 kcal/mol@LB@Unfolding Energy - sRNA 22.5 kcal/mol@LB@@LB@Position - mRNA 104 -- 163@LB@Position - sRNA 36 -- 90@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 42 -- 48@LB@ |
83 |
0.003855 |
0.1596 |
stm1680 |
ycjI |
-14.22 |
0.156552 |
151 -- 200 |
34 -- 86 |
murein peptide amidase A |
|
_____________150_________201\n_____________|___________|\n5'-GAA...CUGAA___________UUCGC...CGG-3'\n______________CAUUAUGGACG\n______________||:|||||||:\n______________GUGAUACCUGU\n3'-UUU...AAUUA___________CUGUC...UCA-5'\n_____________|___________|\n_____________87__________33\n |
259 -- 265 |
159 -- 165 |
-14.9153 kcal/mol |
1.6295 kcal/mol |
3.40995 kcal/mol |
150 201@LB@ | |@LB@5'-GAA...CUGAA UUCGC...CGG-3'@LB@ CAUUAUGGACG@LB@ ||:|||||||:@LB@ GUGAUACCUGU@LB@3'-UUU...AAUUA CUGUC...UCA-5'@LB@ | |@LB@ 87 33@LB@@LB@@LB@Energy -14.22 kcal/mol@LB@Hybridization Energy -14.9153 kcal/mol@LB@Unfolding Energy - mRNA 1.6295 kcal/mol@LB@Unfolding Energy - sRNA 3.40995 kcal/mol@LB@@LB@Position - mRNA 151 -- 200@LB@Position - sRNA 34 -- 86@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 159 -- 165@LB@ |
146 |
0.007509 |
0.1831 |
stm1510 |
ydfH |
-14.80 |
0.126744 |
211 -- 261 |
32 -- 88 |
GntR family transcriptional regulator |
|
_____________210_____________________________________________________262\n_____________|_______________________________________________________|\n5'-UGA...AAAAA__AA____GAAU_____UCG___________UUAACCCU_______CUGU_____AGCAA...GCA-3'\n______________GU__GAAU____GACCG_____AAACGCAGC________ACACAGC____CAACC\n______________||__||||____||||:_____||||:||:|________|||||:|____|||||\n______________CA__CUUA____CUGGU_____UUUGUGUUG________UGUGUUG____GUUGG\n3'-UUU...GGCAC__GA____GCGU_____UAACG_________U______________UAGU_____CAUUC...UCA-5'\n_____________|_______________________________________________________|\n_____________89______________________________________________________31\n |
228 -- 234 |
72 -- 78 |
-34.0267 kcal/mol |
5.39256 kcal/mol |
17.9909 kcal/mol |
210 262@LB@ | |@LB@5'-UGA...AAAAA AA GAAU UCG UUAACCCU CUGU AGCAA...GCA-3'@LB@ GU GAAU GACCG AAACGCAGC ACACAGC CAACC@LB@ || |||| ||||: ||||:||:| |||||:| |||||@LB@ CA CUUA CUGGU UUUGUGUUG UGUGUUG GUUGG@LB@3'-UUU...GGCAC GA GCGU UAACG U UAGU CAUUC...UCA-5'@LB@ | |@LB@ 89 31@LB@@LB@@LB@Energy -14.80 kcal/mol@LB@Hybridization Energy -34.0267 kcal/mol@LB@Unfolding Energy - mRNA 5.39256 kcal/mol@LB@Unfolding Energy - sRNA 17.9909 kcal/mol@LB@@LB@Position - mRNA 211 -- 261@LB@Position - sRNA 32 -- 88@LB@Position Seed - mRNA 228 -- 234@LB@Position Seed - sRNA 72 -- 78@LB@ |